Wall clock time and date at job start Sat Apr 11 2020 06:48:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81405 * 1
3 3 C 1.76200 * 102.99656 * 2 1
4 4 C 1.38754 * 120.09475 * 359.72317 * 3 2 1
5 5 C 1.38216 * 120.00414 * 180.27733 * 4 3 2
6 6 C 1.38380 * 120.17755 * 359.97438 * 5 4 3
7 7 Cl 1.73612 * 119.90692 * 180.02562 * 6 5 4
8 8 C 1.38351 * 120.18460 * 0.02562 * 6 5 4
9 9 C 1.38626 * 119.99853 * 0.02562 * 8 6 5
10 10 N 1.40193 * 120.09323 * 179.97438 * 9 8 6
11 11 C 1.34773 * 120.00032 * 24.78607 * 10 9 8
12 12 O 1.21593 * 120.00120 * 5.63182 * 11 10 9
13 13 N 1.34772 * 120.00116 * 185.63266 * 11 10 9
14 14 C 1.46503 * 120.00105 * 179.97438 * 13 11 10
15 15 C 1.50699 * 109.46889 * 180.02562 * 14 13 11
16 16 O 1.21292 * 120.00297 * 359.97438 * 15 14 13
17 17 N 1.34780 * 120.00148 * 180.02562 * 15 14 13
18 18 C 1.37097 * 120.00398 * 179.97438 * 17 15 14
19 19 H 1.07996 * 120.00087 * 0.02562 * 18 17 15
20 20 C 1.38945 * 120.00041 * 179.97438 * 18 17 15
21 21 N 1.31414 * 120.00046 * 0.02562 * 20 18 17
22 22 Si 1.86801 * 120.00017 * 180.02562 * 20 18 17
23 23 H 1.48493 * 109.47212 * 359.97438 * 22 20 18
24 24 H 1.48504 * 109.47383 * 120.00124 * 22 20 18
25 25 H 1.48500 * 109.46801 * 239.99801 * 22 20 18
26 26 H 1.09011 * 109.46769 * 299.99822 * 1 2 3
27 27 H 1.08996 * 109.47302 * 59.99919 * 1 2 3
28 28 H 1.09000 * 109.47128 * 180.02562 * 1 2 3
29 29 H 1.08001 * 119.99814 * 0.28011 * 4 3 2
30 30 H 1.07996 * 119.90833 * 180.02562 * 5 4 3
31 31 H 1.08004 * 120.00049 * 180.02562 * 8 6 5
32 32 H 0.97000 * 119.99971 * 204.79336 * 10 9 8
33 33 H 0.97002 * 119.99704 * 0.02562 * 13 11 10
34 34 H 1.09002 * 109.46697 * 299.99494 * 14 13 11
35 35 H 1.08992 * 109.46964 * 59.99986 * 14 13 11
36 36 H 0.97001 * 119.99273 * 359.97438 * 17 15 14
37 37 H 0.97007 * 119.99910 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2103 1.7169 0.0000
4 6 1.1970 2.6648 -0.0058
5 6 1.5100 4.0110 -0.0116
6 6 2.8327 4.4177 -0.0111
7 17 3.2179 6.1105 -0.0177
8 6 3.8491 3.4790 -0.0053
9 6 3.5437 2.1268 -0.0006
10 7 4.5720 1.1739 0.0047
11 6 5.7857 1.4950 0.4947
12 8 5.9610 2.5751 1.0251
13 7 6.8052 0.6190 0.3969
14 6 8.1248 0.9683 0.9290
15 6 9.0795 -0.1737 0.6939
16 8 8.6955 -1.1805 0.1370
17 7 10.3600 -0.0767 1.1032
18 6 11.2285 -1.1158 0.8897
19 1 10.8868 -2.0119 0.3932
20 6 12.5487 -1.0156 1.3113
21 7 12.9646 0.0750 1.9151
22 14 13.7322 -2.4311 1.0198
23 1 13.0218 -3.5356 0.3265
24 1 14.8640 -1.9650 0.1789
25 1 14.2517 -2.9183 2.3229
26 1 -0.3633 0.5139 0.8901
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 0.1637 2.3506 -0.0058
30 1 0.7202 4.7475 -0.0157
31 1 4.8804 3.7997 -0.0045
32 1 4.4099 0.2836 -0.3443
33 1 6.6655 -0.2424 -0.0265
34 1 8.4952 1.8608 0.4247
35 1 8.0455 1.1617 1.9987
36 1 10.6670 0.7283 1.5489
37 1 13.8864 0.1451 2.2090
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000348886888.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:10
Heat of formation + Delta-G solvation = -40.646471 kcal
Electronic energy + Delta-G solvation = -23807.281797 eV
Core-core repulsion = 19929.949244 eV
Total energy + Delta-G solvation = -3877.332554 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 343.054 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.82375 -39.09267 -38.19050 -36.68086 -34.93118 -34.56157 -33.79548 -31.45043
-31.40147 -30.03249 -29.24978 -27.45590 -24.63528 -23.48460 -22.88821 -20.87940
-19.68219 -18.82176 -18.38326 -17.91020 -17.38056 -16.05229 -15.96323 -15.71636
-15.31167 -15.04900 -14.77133 -14.59900 -14.40447 -14.30403 -14.08745 -13.99554
-13.59832 -13.50395 -13.04577 -12.67163 -12.31375 -12.25946 -12.05692 -11.90553
-11.65678 -11.16910 -11.16111 -10.73696 -10.59409 -10.42721 -10.35051 -10.11625
-9.70920 -9.67559 -9.01618 -8.67873 -8.55093 -8.13157 -7.59918 -6.54064
-3.96187 0.70160 0.98161 1.07460 1.87075 2.03176 2.49691 2.95721
3.08714 3.21385 3.27939 3.42250 3.70530 4.01761 4.18397 4.39923
4.61947 4.62609 4.75013 4.81887 4.98992 5.00530 5.14506 5.20232
5.36142 5.60401 5.78243 5.83331 5.91229 5.95450 6.02130 6.06621
6.54999 6.59173 6.79350 7.43966 7.89050 7.91374 8.40798 8.47286
9.01913 9.35874 9.83311 10.62764
Molecular weight = 343.05amu
Principal moments of inertia in cm(-1)
A = 0.015629 B = 0.002233 C = 0.001970
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1791.136060 B =12535.619435 C =14211.860890
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 S -0.111 6.111
3 C -0.124 4.124
4 C -0.099 4.099
5 C -0.119 4.119
6 C -0.014 4.014
7 Cl -0.065 7.065
8 C -0.109 4.109
9 C 0.214 3.786
10 N -0.679 5.679
11 C 0.705 3.295
12 O -0.574 6.574
13 N -0.713 5.713
14 C 0.126 3.874
15 C 0.427 3.573
16 O -0.597 6.597
17 N -0.547 5.547
18 C -0.305 4.305
19 H 0.106 0.894
20 C 0.026 3.974
21 N -0.893 5.893
22 Si 0.933 3.067
23 H -0.267 1.267
24 H -0.280 1.280
25 H -0.280 1.280
26 H 0.086 0.914
27 H 0.085 0.915
28 H 0.110 0.890
29 H 0.135 0.865
30 H 0.135 0.865
31 H 0.167 0.833
32 H 0.412 0.588
33 H 0.410 0.590
34 H 0.086 0.914
35 H 0.086 0.914
36 H 0.396 0.604
37 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.190 6.115 -3.908 26.214
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.311 4.311
2 S 0.130 5.870
3 C -0.240 4.240
4 C -0.124 4.124
5 C -0.141 4.141
6 C -0.044 4.044
7 Cl -0.036 7.036
8 C -0.132 4.132
9 C 0.111 3.889
10 N -0.326 5.326
11 C 0.405 3.595
12 O -0.451 6.451
13 N -0.370 5.370
14 C -0.002 4.002
15 C 0.213 3.787
16 O -0.484 6.484
17 N -0.182 5.182
18 C -0.434 4.434
19 H 0.124 0.876
20 C -0.177 4.177
21 N -0.534 5.534
22 Si 0.759 3.241
23 H -0.191 1.191
24 H -0.206 1.206
25 H -0.206 1.206
26 H 0.105 0.895
27 H 0.104 0.896
28 H 0.128 0.872
29 H 0.153 0.847
30 H 0.153 0.847
31 H 0.184 0.816
32 H 0.249 0.751
33 H 0.248 0.752
34 H 0.104 0.896
35 H 0.104 0.896
36 H 0.230 0.770
37 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -24.237 5.480 -3.710 25.124
hybrid contribution -0.103 0.265 -0.125 0.311
sum -24.340 5.745 -3.835 25.301
Atomic orbital electron populations
1.23699 0.94279 1.07359 1.05787 1.85459 1.07043 1.01785 1.92709
1.21447 0.94456 0.97772 1.10332 1.20825 0.97971 0.91873 1.01706
1.20848 0.94726 0.95790 1.02689 1.20725 0.93978 0.85400 1.04314
1.98377 1.94701 1.13677 1.96817 1.21333 1.01529 0.89797 1.00557
1.16767 0.84956 0.88446 0.98717 1.42681 1.09607 1.15548 1.64724
1.15786 0.79908 0.84489 0.79291 1.90898 1.82662 1.22692 1.48886
1.44792 1.08889 1.20279 1.63032 1.20884 0.81341 0.97850 1.00102
1.19691 0.83857 0.89049 0.86121 1.90502 1.77086 1.32443 1.48366
1.41787 1.07532 1.18186 1.50705 1.19775 0.90010 0.97079 1.36543
0.87591 1.25335 0.97903 0.98137 0.96346 1.69624 1.18238 1.26788
1.38706 0.85754 0.79642 0.80529 0.78147 1.19119 1.20586 1.20591
0.89522 0.89566 0.87169 0.84717 0.84666 0.81550 0.75108 0.75191
0.89586 0.89597 0.76984 0.91592
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.70 9.15 101.05 0.92 0.23 16
2 S -0.11 -0.97 21.27 -107.50 -2.29 -3.26 16
3 C -0.12 -1.30 6.12 -38.92 -0.24 -1.53 16
4 C -0.10 -0.85 9.36 -39.40 -0.37 -1.22 16
5 C -0.12 -1.09 9.82 -39.54 -0.39 -1.48 16
6 C -0.01 -0.16 6.32 -39.49 -0.25 -0.41 16
7 Cl -0.06 -0.70 28.95 -51.86 -1.50 -2.21 16
8 C -0.11 -1.46 8.50 -39.40 -0.33 -1.79 16
9 C 0.21 2.71 6.44 -83.42 -0.54 2.18 16
10 N -0.68 -8.77 5.18 -14.07 -0.07 -8.84 16
11 C 0.71 11.10 8.37 -86.93 -0.73 10.37 16
12 O -0.57 -10.43 13.51 5.28 0.07 -10.36 16
13 N -0.71 -11.51 5.53 -66.42 -0.37 -11.88 16
14 C 0.13 2.25 6.15 -5.19 -0.03 2.22 16
15 C 0.43 9.55 7.85 -10.98 -0.09 9.46 16
16 O -0.60 -14.93 15.24 5.55 0.08 -14.85 16
17 N -0.55 -13.32 5.29 -10.97 -0.06 -13.38 16
18 C -0.30 -8.17 9.68 -14.94 -0.14 -8.31 16
19 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16
20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16
21 N -0.89 -23.63 13.05 55.50 0.72 -22.90 16
22 Si 0.93 20.34 29.55 -169.99 -5.02 15.31 16
23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16
25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16
26 H 0.09 0.37 7.76 -51.92 -0.40 -0.04 16
27 H 0.09 0.33 7.74 -51.93 -0.40 -0.07 16
28 H 0.11 0.40 8.14 -51.92 -0.42 -0.02 16
29 H 0.14 0.77 5.87 -52.49 -0.31 0.46 16
30 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16
31 H 0.17 2.54 5.79 -52.48 -0.30 2.24 16
32 H 0.41 4.55 7.66 -40.82 -0.31 4.23 16
33 H 0.41 6.45 7.46 -40.82 -0.30 6.15 16
34 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16
35 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16
36 H 0.40 9.27 7.90 -40.82 -0.32 8.95 16
37 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16
LS Contribution 350.28 15.07 5.28 5.28
Total: -1.00 -30.92 350.28 -8.99 -39.91
By element:
Atomic # 1 Polarization: 20.46 SS G_CDS: -3.56 Total: 16.90 kcal
Atomic # 6 Polarization: 12.56 SS G_CDS: -2.28 Total: 10.28 kcal
Atomic # 7 Polarization: -57.23 SS G_CDS: 0.23 Total: -57.01 kcal
Atomic # 8 Polarization: -25.36 SS G_CDS: 0.16 Total: -25.21 kcal
Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal
Atomic # 16 Polarization: -0.97 SS G_CDS: -2.29 Total: -3.26 kcal
Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.21 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -30.92 -8.99 -39.91 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000348886888.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.740 kcal
(2) G-P(sol) polarization free energy of solvation -30.920 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.660 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.646 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds