Wall clock time and date at job start Sat Apr 11 2020 06:48:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81405 * 1
3 3 C 1.76200 * 102.99656 * 2 1
4 4 C 1.38754 * 120.09475 * 359.72317 * 3 2 1
5 5 C 1.38216 * 120.00414 * 180.27733 * 4 3 2
6 6 C 1.38380 * 120.17755 * 359.97438 * 5 4 3
7 7 Cl 1.73612 * 119.90692 * 180.02562 * 6 5 4
8 8 C 1.38351 * 120.18460 * 0.02562 * 6 5 4
9 9 C 1.38626 * 119.99853 * 0.02562 * 8 6 5
10 10 N 1.40193 * 120.09323 * 179.97438 * 9 8 6
11 11 C 1.34773 * 120.00032 * 24.78607 * 10 9 8
12 12 O 1.21593 * 120.00120 * 5.63182 * 11 10 9
13 13 N 1.34772 * 120.00116 * 185.63266 * 11 10 9
14 14 C 1.46503 * 120.00105 * 179.97438 * 13 11 10
15 15 C 1.50699 * 109.46889 * 180.02562 * 14 13 11
16 16 O 1.21292 * 120.00297 * 359.97438 * 15 14 13
17 17 N 1.34780 * 120.00148 * 180.02562 * 15 14 13
18 18 C 1.37097 * 120.00398 * 179.97438 * 17 15 14
19 19 H 1.07996 * 120.00087 * 0.02562 * 18 17 15
20 20 C 1.38945 * 120.00041 * 179.97438 * 18 17 15
21 21 N 1.31414 * 120.00046 * 0.02562 * 20 18 17
22 22 Si 1.86801 * 120.00017 * 180.02562 * 20 18 17
23 23 H 1.48493 * 109.47212 * 359.97438 * 22 20 18
24 24 H 1.48504 * 109.47383 * 120.00124 * 22 20 18
25 25 H 1.48500 * 109.46801 * 239.99801 * 22 20 18
26 26 H 1.09011 * 109.46769 * 299.99822 * 1 2 3
27 27 H 1.08996 * 109.47302 * 59.99919 * 1 2 3
28 28 H 1.09000 * 109.47128 * 180.02562 * 1 2 3
29 29 H 1.08001 * 119.99814 * 0.28011 * 4 3 2
30 30 H 1.07996 * 119.90833 * 180.02562 * 5 4 3
31 31 H 1.08004 * 120.00049 * 180.02562 * 8 6 5
32 32 H 0.97000 * 119.99971 * 204.79336 * 10 9 8
33 33 H 0.97002 * 119.99704 * 0.02562 * 13 11 10
34 34 H 1.09002 * 109.46697 * 299.99494 * 14 13 11
35 35 H 1.08992 * 109.46964 * 59.99986 * 14 13 11
36 36 H 0.97001 * 119.99273 * 359.97438 * 17 15 14
37 37 H 0.97007 * 119.99910 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2103 1.7169 0.0000
4 6 1.1970 2.6648 -0.0058
5 6 1.5100 4.0110 -0.0116
6 6 2.8327 4.4177 -0.0111
7 17 3.2179 6.1105 -0.0177
8 6 3.8491 3.4790 -0.0053
9 6 3.5437 2.1268 -0.0006
10 7 4.5720 1.1739 0.0047
11 6 5.7857 1.4950 0.4947
12 8 5.9610 2.5751 1.0251
13 7 6.8052 0.6190 0.3969
14 6 8.1248 0.9683 0.9290
15 6 9.0795 -0.1737 0.6939
16 8 8.6955 -1.1805 0.1370
17 7 10.3600 -0.0767 1.1032
18 6 11.2285 -1.1158 0.8897
19 1 10.8868 -2.0119 0.3932
20 6 12.5487 -1.0156 1.3113
21 7 12.9646 0.0750 1.9151
22 14 13.7322 -2.4311 1.0198
23 1 13.0218 -3.5356 0.3265
24 1 14.8640 -1.9650 0.1789
25 1 14.2517 -2.9183 2.3229
26 1 -0.3633 0.5139 0.8901
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 0.1637 2.3506 -0.0058
30 1 0.7202 4.7475 -0.0157
31 1 4.8804 3.7997 -0.0045
32 1 4.4099 0.2836 -0.3443
33 1 6.6655 -0.2424 -0.0265
34 1 8.4952 1.8608 0.4247
35 1 8.0455 1.1617 1.9987
36 1 10.6670 0.7283 1.5489
37 1 13.8864 0.1451 2.2090
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000348886888.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:09
Heat of formation + Delta-G solvation = -61.671446 kcal
Electronic energy + Delta-G solvation = -23808.193509 eV
Core-core repulsion = 19929.949244 eV
Total energy + Delta-G solvation = -3878.244265 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 343.054 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.94521 -40.41133 -39.66099 -37.54913 -36.31689 -35.91294 -35.43789 -33.38178
-32.20815 -31.03747 -29.67909 -28.95129 -26.44897 -24.37668 -23.82768 -22.04311
-21.40691 -20.16038 -19.88184 -19.20040 -18.23341 -17.48552 -17.13458 -16.97566
-16.58791 -16.41040 -16.10844 -15.83512 -15.61415 -15.34961 -15.26345 -14.89619
-14.87408 -14.26871 -14.00209 -13.74159 -13.55433 -13.52173 -13.37036 -13.05283
-12.91688 -12.75615 -12.44612 -12.11298 -12.02955 -11.65173 -11.58262 -11.32343
-11.24984 -10.57634 -10.50713 -10.34571 -10.09626 -9.46548 -8.51397 -8.33177
-6.01467 -0.12261 0.14477 0.42730 1.04643 1.34960 1.35155 1.43465
1.45072 1.57778 1.81191 1.91411 2.27686 2.50871 2.88966 3.15891
3.15990 3.66065 4.03192 4.12075 4.18171 4.19331 4.32796 4.33503
4.39681 4.42569 4.55576 4.77296 4.91353 4.97570 5.11078 5.16874
5.25196 5.38665 5.66061 5.70361 5.91656 6.47232 6.72041 7.03318
7.22599 7.43781 7.93580 8.65686
Molecular weight = 343.05amu
Principal moments of inertia in cm(-1)
A = 0.015629 B = 0.002233 C = 0.001970
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1791.136060 B =12535.619435 C =14211.860890
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 S -0.144 6.144
3 C -0.121 4.121
4 C -0.091 4.091
5 C -0.108 4.108
6 C -0.027 4.027
7 Cl -0.067 7.067
8 C -0.129 4.129
9 C 0.185 3.815
10 N -0.668 5.668
11 C 0.707 3.293
12 O -0.600 6.600
13 N -0.714 5.714
14 C 0.140 3.860
15 C 0.434 3.566
16 O -0.623 6.623
17 N -0.558 5.558
18 C -0.335 4.335
19 H 0.087 0.913
20 C -0.011 4.011
21 N -0.916 5.916
22 Si 0.996 3.004
23 H -0.270 1.270
24 H -0.271 1.271
25 H -0.271 1.271
26 H 0.099 0.901
27 H 0.102 0.898
28 H 0.125 0.875
29 H 0.172 0.828
30 H 0.165 0.835
31 H 0.140 0.860
32 H 0.420 0.580
33 H 0.412 0.588
34 H 0.098 0.902
35 H 0.097 0.903
36 H 0.399 0.601
37 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.599 5.867 -4.039 28.504
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.302 4.302
2 S 0.098 5.902
3 C -0.236 4.236
4 C -0.115 4.115
5 C -0.129 4.129
6 C -0.057 4.057
7 Cl -0.038 7.038
8 C -0.152 4.152
9 C 0.084 3.916
10 N -0.315 5.315
11 C 0.408 3.592
12 O -0.480 6.480
13 N -0.371 5.371
14 C 0.012 3.988
15 C 0.221 3.779
16 O -0.512 6.512
17 N -0.194 5.194
18 C -0.465 4.465
19 H 0.105 0.895
20 C -0.212 4.212
21 N -0.556 5.556
22 Si 0.820 3.180
23 H -0.194 1.194
24 H -0.197 1.197
25 H -0.197 1.197
26 H 0.118 0.882
27 H 0.121 0.879
28 H 0.143 0.857
29 H 0.189 0.811
30 H 0.182 0.818
31 H 0.157 0.843
32 H 0.258 0.742
33 H 0.251 0.749
34 H 0.116 0.884
35 H 0.115 0.885
36 H 0.234 0.766
37 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -26.690 5.237 -3.850 27.470
hybrid contribution 0.449 0.350 -0.106 0.579
sum -26.241 5.587 -3.956 27.119
Atomic orbital electron populations
1.23860 0.90267 1.08862 1.07211 1.85646 1.11443 1.00733 1.92393
1.21637 0.93793 0.99147 1.09042 1.21283 0.99229 0.91181 0.99847
1.21216 0.94246 0.96810 1.00609 1.20850 0.94656 0.85052 1.05121
1.98370 1.94864 1.13691 1.96871 1.21163 1.00859 0.90791 1.02412
1.16957 0.85805 0.88103 1.00784 1.42480 1.08770 1.16096 1.64179
1.15805 0.80460 0.83855 0.79124 1.90888 1.83261 1.23684 1.50128
1.44685 1.08494 1.20530 1.63346 1.20681 0.81106 0.95981 1.01019
1.20359 0.83732 0.89560 0.84290 1.90479 1.77602 1.33970 1.49103
1.41829 1.08090 1.17978 1.51484 1.19762 0.91239 0.97435 1.38016
0.89546 1.26126 0.98876 1.00507 0.95644 1.69688 1.18890 1.28065
1.38953 0.84817 0.77453 0.77442 0.78313 1.19403 1.19662 1.19663
0.88237 0.87906 0.85658 0.81073 0.81775 0.84251 0.74153 0.74934
0.88425 0.88517 0.76643 0.91071
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.80 9.15 113.37 1.04 0.24 16
2 S -0.14 -2.23 21.27 -56.49 -1.20 -3.44 16
3 C -0.12 -2.31 6.12 22.70 0.14 -2.17 16
4 C -0.09 -1.28 9.36 22.39 0.21 -1.07 16
5 C -0.11 -1.68 9.82 22.30 0.22 -1.46 16
6 C -0.03 -0.60 6.32 22.33 0.14 -0.45 16
7 Cl -0.07 -1.43 28.95 -2.72 -0.08 -1.51 16
8 C -0.13 -3.51 8.50 22.39 0.19 -3.32 16
9 C 0.19 4.68 6.44 38.20 0.25 4.93 16
10 N -0.67 -17.49 5.18 -316.68 -1.64 -19.13 16
11 C 0.71 22.72 8.37 179.06 1.50 24.22 16
12 O -0.60 -22.45 13.51 -4.01 -0.05 -22.51 16
13 N -0.71 -23.34 5.53 -482.30 -2.67 -26.01 16
14 C 0.14 5.04 6.15 85.63 0.53 5.57 16
15 C 0.43 19.72 7.85 87.66 0.69 20.41 16
16 O -0.62 -31.78 15.24 -3.07 -0.05 -31.83 16
17 N -0.56 -27.76 5.29 -306.99 -1.62 -29.38 16
18 C -0.34 -18.34 9.68 84.04 0.81 -17.52 16
19 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16
20 C -0.01 -0.56 5.50 84.92 0.47 -0.10 16
21 N -0.92 -48.50 13.05 21.66 0.28 -48.22 16
22 Si 1.00 41.62 29.55 68.60 2.03 43.65 16
23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16
24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16
25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16
26 H 0.10 0.40 7.76 -2.38 -0.02 0.38 16
27 H 0.10 0.33 7.74 -2.39 -0.02 0.31 16
28 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16
29 H 0.17 1.10 5.87 -2.91 -0.02 1.08 16
30 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16
31 H 0.14 4.52 5.79 -2.91 -0.02 4.50 16
32 H 0.42 9.35 7.66 -92.71 -0.71 8.64 16
33 H 0.41 13.17 7.46 -92.71 -0.69 12.48 16
34 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16
35 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16
36 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16
37 H 0.28 13.83 8.31 -92.70 -0.77 13.06 16
Total: -1.00 -67.95 350.28 0.22 -67.73
By element:
Atomic # 1 Polarization: 42.34 SS G_CDS: -0.96 Total: 41.38 kcal
Atomic # 6 Polarization: 23.08 SS G_CDS: 6.18 Total: 29.26 kcal
Atomic # 7 Polarization: -117.08 SS G_CDS: -5.65 Total: -122.73 kcal
Atomic # 8 Polarization: -54.24 SS G_CDS: -0.10 Total: -54.34 kcal
Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal
Atomic # 16 Polarization: -2.23 SS G_CDS: -1.20 Total: -3.44 kcal
Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal
Total: -67.95 0.22 -67.73 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000348886888.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.058 kcal
(2) G-P(sol) polarization free energy of solvation -67.946 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.888 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.730 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.671 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds