Wall clock time and date at job start Sat Apr 11 2020 06:48:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53005 * 109.46821 * 2 1
4 4 H 1.09007 * 109.46750 * 179.97438 * 3 2 1
5 5 C 1.50698 * 109.47293 * 299.94107 * 3 2 1
6 6 H 1.08001 * 119.99532 * 115.89817 * 5 3 2
7 7 C 1.37879 * 120.00170 * 295.90026 * 5 3 2
8 8 N 1.31512 * 119.99955 * 353.48061 * 7 5 3
9 9 Si 1.86800 * 119.99854 * 173.48145 * 7 5 3
10 10 H 1.48505 * 109.46792 * 269.99650 * 9 7 5
11 11 H 1.48501 * 109.47415 * 29.99795 * 9 7 5
12 12 H 1.48491 * 109.47113 * 150.00136 * 9 7 5
13 13 N 1.46495 * 109.47073 * 59.94709 * 3 2 1
14 14 S 1.65598 * 120.00472 * 95.70309 * 13 3 2
15 15 O 1.42100 * 106.40310 * 178.00735 * 14 13 3
16 16 O 1.42103 * 106.39946 * 310.91946 * 14 13 3
17 17 C 1.76195 * 107.22171 * 64.46219 * 14 13 3
18 18 C 1.38565 * 119.84421 * 90.00029 * 17 14 13
19 19 C 1.38054 * 120.39940 * 179.97438 * 18 17 14
20 20 C 1.38708 * 120.09117 * 0.04298 * 19 18 17
21 21 O 1.35640 * 120.15025 * 180.02562 * 20 19 18
22 22 C 1.42893 * 117.00360 * 359.97438 * 21 20 19
23 23 C 1.40198 * 119.69189 * 359.97438 * 20 19 18
24 24 C 1.47396 * 120.19775 * 180.02562 * 23 20 19
25 25 O 1.21516 * 119.99664 * 0.02562 * 24 23 20
26 26 O 1.34749 * 120.00120 * 180.02562 * 24 23 20
27 27 C 1.37769 * 119.84547 * 269.73179 * 17 14 13
28 28 H 1.09000 * 109.46971 * 185.00591 * 1 2 3
29 29 H 1.09003 * 109.46930 * 305.00041 * 1 2 3
30 30 H 1.09000 * 109.47479 * 65.00072 * 1 2 3
31 31 H 1.09000 * 109.46802 * 240.00471 * 2 1 3
32 32 H 1.08999 * 109.47441 * 120.00278 * 2 1 3
33 33 H 0.96999 * 120.00101 * 355.01354 * 8 7 5
34 34 H 0.97002 * 119.99985 * 275.69997 * 13 3 2
35 35 H 1.07994 * 119.80137 * 0.02562 * 18 17 14
36 36 H 1.08001 * 119.95391 * 180.02562 * 19 18 17
37 37 H 1.09002 * 109.47400 * 60.00350 * 22 21 20
38 38 H 1.09002 * 109.47411 * 179.97438 * 22 21 20
39 39 H 1.08997 * 109.47486 * 299.99965 * 22 21 20
40 40 H 0.96701 * 116.99430 * 179.97438 * 26 24 23
41 41 H 1.07997 * 120.05010 * 359.97438 * 27 17 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 3.1300 1.4426 0.0005
5 6 1.5388 2.1526 -1.2312
6 1 0.8643 2.9904 -1.1343
7 6 1.9414 1.7325 -2.4812
8 7 2.8596 0.7981 -2.5967
9 14 1.1825 2.4906 -4.0105
10 1 -0.0166 1.7095 -4.4072
11 1 0.7872 3.8930 -3.7239
12 1 2.1735 2.4717 -5.1162
13 7 1.5506 2.1335 1.1955
14 16 2.5056 2.2312 2.5448
15 8 1.7762 2.9910 3.4986
16 8 2.9790 0.9153 2.7974
17 6 3.9175 3.1941 2.1160
18 6 3.8916 4.5691 2.2853
19 6 4.9915 5.3346 1.9536
20 6 6.1322 4.7300 1.4464
21 8 7.2138 5.4810 1.1206
22 6 7.1098 6.8914 1.3249
23 6 6.1624 3.3391 1.2732
24 6 7.3690 2.6850 0.7356
25 8 8.3415 3.3516 0.4416
26 8 7.3935 1.3479 0.5703
27 6 5.0439 2.5758 1.6191
28 1 -0.3633 -1.0238 0.0897
29 1 -0.3633 0.5895 0.8418
30 1 -0.3634 0.4343 -0.9314
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5139 0.8899
33 1 3.3055 0.4559 -1.8062
34 1 0.6670 2.5339 1.1967
35 1 3.0060 5.0448 2.6799
36 1 4.9637 6.4058 2.0889
37 1 6.9204 7.0928 2.3793
38 1 8.0413 7.3716 1.0254
39 1 6.2885 7.2857 0.7265
40 1 8.2067 0.9645 0.2143
41 1 5.0612 1.5033 1.4933
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000054176930.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:06
Heat of formation + Delta-G solvation = -180.643902 kcal
Electronic energy + Delta-G solvation = -29031.197115 eV
Core-core repulsion = 24810.624996 eV
Total energy + Delta-G solvation = -4220.572119 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.101 amu
Computer time = 1.40 seconds
Orbital eigenvalues (eV)
-40.82965 -39.41815 -37.63552 -36.95299 -36.27456 -35.90228 -35.45540 -32.31122
-31.79031 -30.67463 -30.43532 -27.71601 -25.94275 -24.83286 -23.77654 -22.77737
-21.77706 -20.19920 -19.04672 -18.49998 -17.97108 -17.68499 -17.34529 -16.76766
-16.39596 -16.17115 -15.98573 -15.32268 -15.06737 -14.68179 -14.15178 -13.90757
-13.71608 -13.54464 -13.32437 -13.17108 -13.03234 -12.97758 -12.68091 -12.32220
-11.75962 -11.68864 -11.53878 -11.49069 -11.43787 -11.42679 -11.17648 -10.90434
-10.88550 -10.57328 -10.37138 -10.30505 -10.20524 -9.94688 -9.34648 -9.08570
-8.79733 -8.46947 -8.31160 -6.47384 -4.22502 0.51740 0.79408 0.98358
2.44827 2.86795 3.02633 3.35242 3.37148 3.38384 3.53844 3.63563
4.15009 4.36719 4.42706 4.53161 4.75887 4.85990 4.89278 5.03336
5.22309 5.22813 5.24157 5.32637 5.51959 5.67022 5.88992 5.94690
6.00665 6.17895 6.32111 6.35959 6.41832 6.54734 6.80758 6.97623
6.98544 7.18083 7.27932 7.38044 7.63472 7.99283 8.04626 8.31865
8.68879 9.45792 10.88164
Molecular weight = 343.10amu
Principal moments of inertia in cm(-1)
A = 0.009628 B = 0.004940 C = 0.004173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2907.390827 B = 5666.995401 C = 6707.559865
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.140 4.140
3 C 0.268 3.732
4 H 0.031 0.969
5 C -0.600 4.600
6 H 0.058 0.942
7 C 0.028 3.972
8 N -0.903 5.903
9 Si 1.066 2.934
10 H -0.286 1.286
11 H -0.289 1.289
12 H -0.285 1.285
13 N -1.092 6.092
14 S 2.693 3.307
15 O -0.979 6.979
16 O -0.960 6.960
17 C -0.719 4.719
18 C 0.057 3.943
19 C -0.244 4.244
20 C 0.236 3.764
21 O -0.280 6.280
22 C 0.017 3.983
23 C -0.184 4.184
24 C 0.532 3.468
25 O -0.503 6.503
26 O -0.508 6.508
27 C 0.084 3.916
28 H 0.028 0.972
29 H 0.038 0.962
30 H 0.062 0.938
31 H 0.074 0.926
32 H 0.041 0.959
33 H 0.273 0.727
34 H 0.412 0.588
35 H 0.149 0.851
36 H 0.146 0.854
37 H 0.061 0.939
38 H 0.106 0.894
39 H 0.063 0.937
40 H 0.415 0.585
41 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.180 8.095 8.166 12.611
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.180 4.180
3 C 0.163 3.837
4 H 0.049 0.951
5 C -0.640 4.640
6 H 0.077 0.923
7 C -0.178 4.178
8 N -0.539 5.539
9 Si 0.894 3.106
10 H -0.212 1.212
11 H -0.215 1.215
12 H -0.211 1.211
13 N -0.853 5.853
14 S 2.781 3.219
15 O -0.969 6.969
16 O -0.950 6.950
17 C -0.804 4.804
18 C 0.038 3.962
19 C -0.263 4.263
20 C 0.186 3.814
21 O -0.190 6.190
22 C -0.078 4.078
23 C -0.187 4.187
24 C 0.377 3.623
25 O -0.392 6.392
26 O -0.320 6.320
27 C 0.065 3.935
28 H 0.047 0.953
29 H 0.057 0.943
30 H 0.081 0.919
31 H 0.093 0.907
32 H 0.060 0.940
33 H 0.085 0.915
34 H 0.247 0.753
35 H 0.166 0.834
36 H 0.164 0.836
37 H 0.079 0.921
38 H 0.124 0.876
39 H 0.081 0.919
40 H 0.273 0.727
41 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 5.334 7.873 7.311 11.995
hybrid contribution 0.513 0.779 0.899 1.296
sum 5.847 8.653 8.210 13.284
Atomic orbital electron populations
1.21504 0.96735 0.98604 1.01623 1.22034 0.96301 0.98870 1.00801
1.18645 0.93649 0.88968 0.82480 0.95106 1.22015 1.32401 1.18279
0.91268 0.92326 1.25684 0.95626 0.95454 1.01009 1.70762 1.22782
1.26330 1.34002 0.83584 0.76054 0.75461 0.75485 1.21245 1.21529
1.21100 1.55377 1.28251 1.70525 1.31123 1.01833 0.73216 0.73858
0.73029 1.93526 1.70977 1.72891 1.59502 1.93576 1.81754 1.35693
1.83977 1.31087 1.20076 1.08259 1.20997 1.20898 0.97199 0.91315
0.86803 1.21260 0.94064 1.01202 1.09772 1.19191 0.85907 0.89537
0.86717 1.86348 1.34540 1.19742 1.78360 1.23276 1.04425 0.78392
1.01659 1.18399 0.95493 0.90389 1.14399 1.20355 0.86821 0.80302
0.74868 1.90912 1.35829 1.65003 1.47447 1.84594 1.46205 1.22805
1.78410 1.21158 0.88313 1.00750 0.83307 0.95280 0.94325 0.91874
0.90735 0.94007 0.91529 0.75338 0.83351 0.83625 0.92088 0.87597
0.91876 0.72681 0.82085
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.52 9.48 37.16 0.35 -2.17 16
2 C -0.14 -3.07 5.58 -26.73 -0.15 -3.22 16
3 C 0.27 5.94 2.10 -69.08 -0.14 5.79 16
4 H 0.03 0.72 6.59 -51.92 -0.34 0.38 16
5 C -0.60 -14.70 7.54 -34.44 -0.26 -14.96 16
6 H 0.06 1.42 7.82 -52.49 -0.41 1.01 16
7 C 0.03 0.73 5.24 -17.82 -0.09 0.64 16
8 N -0.90 -24.75 12.83 55.43 0.71 -24.04 16
9 Si 1.07 23.42 29.91 -169.99 -5.08 18.33 16
10 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16
11 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16
12 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16
13 N -1.09 -20.45 4.76 -5.88 -0.03 -20.48 16
14 S 2.69 47.53 5.64 -107.50 -0.61 46.92 16
15 O -0.98 -17.82 17.26 -57.17 -0.99 -18.81 16
16 O -0.96 -19.10 16.60 -57.17 -0.95 -20.05 16
17 C -0.72 -11.79 5.79 -39.63 -0.23 -12.01 16
18 C 0.06 0.80 9.51 -39.53 -0.38 0.42 16
19 C -0.24 -3.09 9.03 -39.48 -0.36 -3.45 16
20 C 0.24 3.51 6.70 -38.67 -0.26 3.25 16
21 O -0.28 -3.93 8.57 -40.50 -0.35 -4.28 16
22 C 0.02 0.15 9.81 101.05 0.99 1.14 16
23 C -0.18 -3.05 5.88 -104.86 -0.62 -3.66 16
24 C 0.53 8.72 8.26 34.46 0.28 9.01 16
25 O -0.50 -9.07 15.95 -26.60 -0.42 -9.49 16
26 O -0.51 -6.98 12.68 -40.63 -0.52 -7.49 16
27 C 0.08 1.42 8.44 -39.18 -0.33 1.09 16
28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
29 H 0.04 0.70 7.19 -51.93 -0.37 0.32 16
30 H 0.06 1.32 7.40 -51.93 -0.38 0.94 16
31 H 0.07 1.78 6.21 -51.93 -0.32 1.46 16
32 H 0.04 0.89 7.71 -51.93 -0.40 0.49 16
33 H 0.27 7.42 6.09 -40.82 -0.25 7.17 16
34 H 0.41 7.03 8.46 -34.46 -0.29 6.74 16
35 H 0.15 1.74 7.60 -52.49 -0.40 1.34 16
36 H 0.15 1.30 6.30 -52.49 -0.33 0.97 16
37 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16
38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16
39 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16
40 H 0.41 3.57 9.11 45.56 0.42 3.99 16
41 H 0.16 2.70 7.14 -52.49 -0.38 2.32 16
LS Contribution 358.12 15.07 5.40 5.40
Total: -1.00 -33.99 358.12 -7.92 -41.91
By element:
Atomic # 1 Polarization: 14.12 SS G_CDS: -3.90 Total: 10.22 kcal
Atomic # 6 Polarization: -16.95 SS G_CDS: -1.19 Total: -18.14 kcal
Atomic # 7 Polarization: -45.20 SS G_CDS: 0.68 Total: -44.52 kcal
Atomic # 8 Polarization: -56.91 SS G_CDS: -3.22 Total: -60.13 kcal
Atomic # 14 Polarization: 23.42 SS G_CDS: -5.08 Total: 18.33 kcal
Atomic # 16 Polarization: 47.53 SS G_CDS: -0.61 Total: 46.92 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -33.99 -7.92 -41.91 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000054176930.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -138.737 kcal
(2) G-P(sol) polarization free energy of solvation -33.987 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.724 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal
(6) G-S(sol) free energy of system = (1) + (5) -180.644 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.40 seconds