Wall clock time and date at job start Sat Apr 11 2020 06:48:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53005 * 109.46821 * 2 1
4 4 H 1.09007 * 109.46750 * 179.97438 * 3 2 1
5 5 C 1.50698 * 109.47293 * 299.94107 * 3 2 1
6 6 H 1.08001 * 119.99532 * 115.89817 * 5 3 2
7 7 C 1.37879 * 120.00170 * 295.90026 * 5 3 2
8 8 N 1.31512 * 119.99955 * 353.48061 * 7 5 3
9 9 Si 1.86800 * 119.99854 * 173.48145 * 7 5 3
10 10 H 1.48505 * 109.46792 * 269.99650 * 9 7 5
11 11 H 1.48501 * 109.47415 * 29.99795 * 9 7 5
12 12 H 1.48491 * 109.47113 * 150.00136 * 9 7 5
13 13 N 1.46495 * 109.47073 * 59.94709 * 3 2 1
14 14 S 1.65598 * 120.00472 * 95.70309 * 13 3 2
15 15 O 1.42100 * 106.40310 * 178.00735 * 14 13 3
16 16 O 1.42103 * 106.39946 * 310.91946 * 14 13 3
17 17 C 1.76195 * 107.22171 * 64.46219 * 14 13 3
18 18 C 1.38565 * 119.84421 * 90.00029 * 17 14 13
19 19 C 1.38054 * 120.39940 * 179.97438 * 18 17 14
20 20 C 1.38708 * 120.09117 * 0.04298 * 19 18 17
21 21 O 1.35640 * 120.15025 * 180.02562 * 20 19 18
22 22 C 1.42893 * 117.00360 * 359.97438 * 21 20 19
23 23 C 1.40198 * 119.69189 * 359.97438 * 20 19 18
24 24 C 1.47396 * 120.19775 * 180.02562 * 23 20 19
25 25 O 1.21516 * 119.99664 * 0.02562 * 24 23 20
26 26 O 1.34749 * 120.00120 * 180.02562 * 24 23 20
27 27 C 1.37769 * 119.84547 * 269.73179 * 17 14 13
28 28 H 1.09000 * 109.46971 * 185.00591 * 1 2 3
29 29 H 1.09003 * 109.46930 * 305.00041 * 1 2 3
30 30 H 1.09000 * 109.47479 * 65.00072 * 1 2 3
31 31 H 1.09000 * 109.46802 * 240.00471 * 2 1 3
32 32 H 1.08999 * 109.47441 * 120.00278 * 2 1 3
33 33 H 0.96999 * 120.00101 * 355.01354 * 8 7 5
34 34 H 0.97002 * 119.99985 * 275.69997 * 13 3 2
35 35 H 1.07994 * 119.80137 * 0.02562 * 18 17 14
36 36 H 1.08001 * 119.95391 * 180.02562 * 19 18 17
37 37 H 1.09002 * 109.47400 * 60.00350 * 22 21 20
38 38 H 1.09002 * 109.47411 * 179.97438 * 22 21 20
39 39 H 1.08997 * 109.47486 * 299.99965 * 22 21 20
40 40 H 0.96701 * 116.99430 * 179.97438 * 26 24 23
41 41 H 1.07997 * 120.05010 * 359.97438 * 27 17 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 3.1300 1.4426 0.0005
5 6 1.5388 2.1526 -1.2312
6 1 0.8643 2.9904 -1.1343
7 6 1.9414 1.7325 -2.4812
8 7 2.8596 0.7981 -2.5967
9 14 1.1825 2.4906 -4.0105
10 1 -0.0166 1.7095 -4.4072
11 1 0.7872 3.8930 -3.7239
12 1 2.1735 2.4717 -5.1162
13 7 1.5506 2.1335 1.1955
14 16 2.5056 2.2312 2.5448
15 8 1.7762 2.9910 3.4986
16 8 2.9790 0.9153 2.7974
17 6 3.9175 3.1941 2.1160
18 6 3.8916 4.5691 2.2853
19 6 4.9915 5.3346 1.9536
20 6 6.1322 4.7300 1.4464
21 8 7.2138 5.4810 1.1206
22 6 7.1098 6.8914 1.3249
23 6 6.1624 3.3391 1.2732
24 6 7.3690 2.6850 0.7356
25 8 8.3415 3.3516 0.4416
26 8 7.3935 1.3479 0.5703
27 6 5.0439 2.5758 1.6191
28 1 -0.3633 -1.0238 0.0897
29 1 -0.3633 0.5895 0.8418
30 1 -0.3634 0.4343 -0.9314
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5139 0.8899
33 1 3.3055 0.4559 -1.8062
34 1 0.6670 2.5339 1.1967
35 1 3.0060 5.0448 2.6799
36 1 4.9637 6.4058 2.0889
37 1 6.9204 7.0928 2.3793
38 1 8.0413 7.3716 1.0254
39 1 6.2885 7.2857 0.7265
40 1 8.2067 0.9645 0.2143
41 1 5.0612 1.5033 1.4933
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000054176930.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:05
Heat of formation + Delta-G solvation = -205.838952 kcal
Electronic energy + Delta-G solvation = -29032.289654 eV
Core-core repulsion = 24810.624996 eV
Total energy + Delta-G solvation = -4221.664659 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.101 amu
Computer time = 1.30 seconds
Orbital eigenvalues (eV)
-41.94979 -40.56311 -38.73934 -38.48346 -37.94222 -37.11426 -36.94491 -34.14520
-32.92266 -32.15354 -31.74359 -28.48734 -27.76263 -26.01735 -25.58446 -23.89643
-22.95614 -21.93909 -20.41417 -19.62811 -19.38874 -19.16949 -18.70653 -18.27285
-17.52287 -17.21250 -17.17266 -16.56347 -16.44089 -15.85440 -15.68952 -15.42805
-15.14032 -14.99933 -14.86560 -14.49350 -14.41497 -14.27048 -13.99906 -13.37289
-13.24084 -13.19342 -13.07262 -12.84605 -12.65147 -12.61419 -12.52724 -12.42235
-12.24279 -12.10178 -12.02977 -11.92041 -11.68180 -11.65073 -10.82706 -10.49486
-10.39997 -10.05922 -9.89829 -8.48889 -6.23314 -0.66904 -0.53832 -0.25716
1.25168 1.60010 1.65668 1.81617 1.91582 1.95397 2.04497 2.31929
2.63228 2.75806 3.21068 3.27273 3.49941 3.58544 3.84728 4.07792
4.21327 4.24788 4.29396 4.32551 4.39768 4.49985 4.53633 4.64846
4.67181 4.74729 4.79353 4.83481 5.12857 5.25137 5.30606 5.41121
5.45954 5.58538 5.64265 5.95493 6.03046 6.27097 6.44817 6.67869
6.88482 7.51803 8.87086
Molecular weight = 343.10amu
Principal moments of inertia in cm(-1)
A = 0.009628 B = 0.004940 C = 0.004173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2907.390827 B = 5666.995401 C = 6707.559865
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.140 4.140
3 C 0.271 3.729
4 H 0.016 0.984
5 C -0.595 4.595
6 H 0.062 0.938
7 C -0.018 4.018
8 N -0.933 5.933
9 Si 1.104 2.896
10 H -0.276 1.276
11 H -0.270 1.270
12 H -0.295 1.295
13 N -1.091 6.091
14 S 2.711 3.289
15 O -0.980 6.980
16 O -0.988 6.988
17 C -0.732 4.732
18 C 0.054 3.946
19 C -0.229 4.229
20 C 0.234 3.766
21 O -0.302 6.302
22 C 0.003 3.997
23 C -0.211 4.211
24 C 0.532 3.468
25 O -0.526 6.526
26 O -0.509 6.509
27 C 0.070 3.930
28 H 0.046 0.954
29 H 0.055 0.945
30 H 0.049 0.951
31 H 0.049 0.951
32 H 0.043 0.957
33 H 0.263 0.737
34 H 0.420 0.580
35 H 0.176 0.824
36 H 0.191 0.809
37 H 0.084 0.916
38 H 0.122 0.878
39 H 0.078 0.922
40 H 0.434 0.566
41 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.287 10.534 8.764 14.358
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.180 4.180
3 C 0.165 3.835
4 H 0.034 0.966
5 C -0.635 4.635
6 H 0.081 0.919
7 C -0.218 4.218
8 N -0.570 5.570
9 Si 0.928 3.072
10 H -0.202 1.202
11 H -0.195 1.195
12 H -0.221 1.221
13 N -0.852 5.852
14 S 2.802 3.198
15 O -0.971 6.971
16 O -0.978 6.978
17 C -0.819 4.819
18 C 0.035 3.965
19 C -0.248 4.248
20 C 0.184 3.816
21 O -0.212 6.212
22 C -0.091 4.091
23 C -0.213 4.213
24 C 0.377 3.623
25 O -0.417 6.417
26 O -0.323 6.323
27 C 0.051 3.949
28 H 0.065 0.935
29 H 0.074 0.926
30 H 0.068 0.932
31 H 0.068 0.932
32 H 0.061 0.939
33 H 0.073 0.927
34 H 0.256 0.744
35 H 0.193 0.807
36 H 0.208 0.792
37 H 0.103 0.897
38 H 0.140 0.860
39 H 0.096 0.904
40 H 0.296 0.704
41 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges 4.405 10.297 7.933 13.724
hybrid contribution 0.888 0.098 0.777 1.184
sum 5.293 10.395 8.710 14.558
Atomic orbital electron populations
1.21464 0.94923 1.00071 1.01615 1.21986 0.97933 0.98469 0.99618
1.18388 0.92814 0.89246 0.83049 0.96643 1.22272 1.31382 1.17898
0.91911 0.91930 1.26801 0.95593 0.95435 1.03980 1.70855 1.24458
1.28150 1.33556 0.83080 0.75499 0.75961 0.72641 1.20190 1.19510
1.22099 1.55203 1.29146 1.70599 1.30209 1.01087 0.73056 0.73294
0.72397 1.93516 1.71436 1.72781 1.59336 1.93537 1.82137 1.37754
1.84340 1.30815 1.18987 1.09454 1.22672 1.21303 0.98673 0.90286
0.86219 1.21695 0.92347 1.03170 1.07552 1.19394 0.86874 0.89161
0.86181 1.86332 1.34466 1.22380 1.78031 1.23704 1.06140 0.75552
1.03658 1.18615 0.95443 0.91757 1.15522 1.20475 0.86643 0.80752
0.74405 1.90883 1.36534 1.65572 1.48735 1.84571 1.47686 1.21882
1.78194 1.21082 0.89077 1.00464 0.84304 0.93488 0.92608 0.93170
0.93216 0.93873 0.92658 0.74403 0.80694 0.79238 0.89701 0.85982
0.90363 0.70411 0.83308
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.77 9.48 71.98 0.68 -4.09 16
2 C -0.14 -6.21 5.58 30.60 0.17 -6.04 16
3 C 0.27 12.11 2.10 44.25 0.09 12.20 16
4 H 0.02 0.76 6.59 -2.38 -0.02 0.74 16
5 C -0.60 -28.91 7.54 25.60 0.19 -28.72 16
6 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16
7 C -0.02 -0.92 5.24 84.66 0.44 -0.47 16
8 N -0.93 -52.24 12.83 21.45 0.28 -51.97 16
9 Si 1.10 46.60 29.91 68.60 2.05 48.65 16
10 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16
11 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16
12 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16
13 N -1.09 -40.06 4.76 -172.52 -0.82 -40.88 16
14 S 2.71 94.12 5.64 -56.49 -0.32 93.80 16
15 O -0.98 -34.02 17.26 -128.00 -2.21 -36.23 16
16 O -0.99 -39.76 16.60 -128.00 -2.13 -41.89 16
17 C -0.73 -23.49 5.79 22.24 0.13 -23.36 16
18 C 0.05 1.38 9.51 22.30 0.21 1.60 16
19 C -0.23 -5.08 9.03 22.34 0.20 -4.88 16
20 C 0.23 6.62 6.70 22.86 0.15 6.77 16
21 O -0.30 -7.97 8.57 -68.61 -0.59 -8.55 16
22 C 0.00 0.04 9.81 113.37 1.11 1.15 16
23 C -0.21 -7.01 5.88 -20.02 -0.12 -7.13 16
24 C 0.53 17.83 8.26 70.23 0.58 18.41 16
25 O -0.53 -19.21 15.95 26.79 0.43 -18.78 16
26 O -0.51 -14.47 12.68 -56.60 -0.72 -15.19 16
27 C 0.07 2.42 8.44 22.53 0.19 2.61 16
28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16
29 H 0.05 1.93 7.19 -2.39 -0.02 1.91 16
30 H 0.05 2.05 7.40 -2.39 -0.02 2.03 16
31 H 0.05 2.44 6.21 -2.39 -0.01 2.43 16
32 H 0.04 1.86 7.71 -2.39 -0.02 1.84 16
33 H 0.26 14.84 6.09 -92.71 -0.56 14.27 16
34 H 0.42 13.72 8.46 -96.75 -0.82 12.90 16
35 H 0.18 3.45 7.60 -2.91 -0.02 3.43 16
36 H 0.19 2.41 6.30 -2.91 -0.02 2.39 16
37 H 0.08 0.78 7.66 -2.39 -0.02 0.77 16
38 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16
39 H 0.08 0.86 7.66 -2.39 -0.02 0.85 16
40 H 0.43 7.71 9.11 -74.06 -0.67 7.03 16
41 H 0.15 5.31 7.14 -2.91 -0.02 5.29 16
Total: -1.00 -73.46 358.12 -0.16 -73.62
By element:
Atomic # 1 Polarization: 29.56 SS G_CDS: -0.18 Total: 29.38 kcal
Atomic # 6 Polarization: -36.00 SS G_CDS: 4.04 Total: -31.96 kcal
Atomic # 7 Polarization: -92.31 SS G_CDS: -0.55 Total: -92.85 kcal
Atomic # 8 Polarization: -115.43 SS G_CDS: -5.21 Total: -120.64 kcal
Atomic # 14 Polarization: 46.60 SS G_CDS: 2.05 Total: 48.65 kcal
Atomic # 16 Polarization: 94.12 SS G_CDS: -0.32 Total: 93.80 kcal
Total: -73.46 -0.16 -73.62 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000054176930.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -132.220 kcal
(2) G-P(sol) polarization free energy of solvation -73.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.677 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.619 kcal
(6) G-S(sol) free energy of system = (1) + (5) -205.839 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds