Wall clock time and date at job start Sat Apr 11 2020 06:47:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30640 * 1
3 3 Si 1.86801 * 120.00312 * 2 1
4 4 H 1.48501 * 109.46895 * 359.97438 * 3 2 1
5 5 H 1.48498 * 109.47086 * 119.99674 * 3 2 1
6 6 H 1.48491 * 109.47072 * 240.00027 * 3 2 1
7 7 C 1.40309 * 119.99778 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99558 * 159.33536 * 7 2 1
9 9 C 1.40530 * 120.00320 * 339.34545 * 7 2 1
10 10 C 1.44188 * 123.71334 * 335.81209 * 9 7 2
11 11 C 1.32762 * 114.43297 * 179.97438 * 10 9 7
12 12 S 1.75475 * 111.36200 * 359.97438 * 11 10 9
13 13 C 1.39544 * 123.72036 * 155.51826 * 9 7 2
14 14 C 1.46244 * 125.22461 * 359.97438 * 13 9 7
15 15 O 1.21761 * 119.99968 * 359.97438 * 14 13 9
16 16 N 1.34775 * 119.99665 * 180.02562 * 14 13 9
17 17 C 1.46502 * 119.99552 * 179.97438 * 16 14 13
18 18 C 1.50699 * 109.47128 * 179.97438 * 17 16 14
19 19 C 1.38719 * 119.78664 * 269.73204 * 18 17 16
20 20 C 1.37668 * 120.50428 * 179.69830 * 19 18 17
21 21 C 1.39713 * 119.77498 * 0.59038 * 20 19 18
22 22 N 1.35901 * 133.44494 * 179.68634 * 21 20 19
23 23 C 1.30760 * 109.61823 * 179.97438 * 22 21 20
24 24 O 1.35284 * 125.02798 * 179.97438 * 23 22 21
25 25 N 1.36377 * 109.93886 * 0.02562 * 23 22 21
26 26 H 0.97002 * 126.36643 * 179.97438 * 25 23 22
27 27 C 1.38451 * 107.26998 * 359.97438 * 25 23 22
28 28 C 1.37934 * 119.78022 * 90.00286 * 18 17 16
29 29 H 0.96999 * 120.00259 * 174.00398 * 1 2 3
30 30 H 1.07997 * 122.78433 * 359.92679 * 10 9 7
31 31 H 1.08005 * 124.32243 * 179.97438 * 11 10 9
32 32 H 0.96997 * 120.00268 * 359.97438 * 16 14 13
33 33 H 1.08996 * 109.47568 * 300.00237 * 17 16 14
34 34 H 1.09005 * 109.46945 * 60.00480 * 17 16 14
35 35 H 1.07995 * 119.74636 * 359.97438 * 19 18 17
36 36 H 1.07998 * 120.11362 * 180.27636 * 20 19 18
37 37 H 0.96692 * 114.00115 * 90.03027 * 24 23 22
38 38 H 1.08006 * 120.07505 * 0.02562 * 28 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3064 0.0000 0.0000
3 14 2.2405 1.6177 0.0000
4 1 1.2755 2.7464 -0.0006
5 1 3.0942 1.6963 1.2125
6 1 3.0942 1.6963 -1.2124
7 6 2.0079 -1.2151 0.0005
8 1 3.0358 -1.2453 -0.3295
9 6 1.3730 -2.3929 0.4303
10 6 0.2445 -2.4120 1.3276
11 6 -0.2109 -3.6264 1.6115
12 16 0.7196 -4.8663 0.7892
13 6 1.7615 -3.6723 0.0312
14 6 2.8669 -3.9730 -0.8779
15 8 3.5301 -3.0677 -1.3503
16 7 3.1507 -5.2522 -1.1936
17 6 4.2577 -5.5534 -2.1047
18 6 4.3635 -7.0451 -2.2909
19 6 5.1699 -7.7899 -1.4428
20 6 5.2725 -9.1542 -1.5956
21 6 4.5689 -9.7925 -2.6200
22 7 4.4716 -11.0874 -3.0208
23 6 3.6690 -11.1693 -4.0499
24 8 3.3509 -12.3137 -4.6974
25 7 3.2010 -9.9301 -4.3745
26 1 2.5912 -9.7170 -5.0981
27 6 3.7582 -9.0329 -3.4793
28 6 3.6621 -7.6601 -3.3069
29 1 -0.4850 -0.8354 -0.0877
30 1 -0.1935 -1.5131 1.7356
31 1 -1.0473 -3.8257 2.2650
32 1 2.6221 -5.9733 -0.8176
33 1 4.0744 -5.0787 -3.0686
34 1 5.1885 -5.1733 -1.6837
35 1 5.7179 -7.2963 -0.6539
36 1 5.8987 -9.7285 -0.9289
37 1 2.5723 -12.7635 -4.3418
38 1 3.0397 -7.0740 -3.9669
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001623793838.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:47:05
Heat of formation + Delta-G solvation = -11.923030 kcal
Electronic energy + Delta-G solvation = -25450.613821 eV
Core-core repulsion = 21576.959659 eV
Total energy + Delta-G solvation = -3873.654162 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 343.078 amu
Computer time = 1.35 seconds
Orbital eigenvalues (eV)
-43.22095 -40.35927 -39.33616 -38.31421 -37.70915 -35.24422 -34.86068 -34.24697
-31.55802 -30.92141 -30.43899 -28.00511 -26.30005 -24.28089 -24.00490 -22.88000
-22.49709 -21.83622 -20.87662 -20.07504 -19.70797 -18.41855 -18.20541 -18.12265
-17.07330 -16.65487 -16.32220 -16.26099 -15.76424 -15.53483 -15.43538 -15.12367
-15.01358 -14.89181 -14.76243 -14.01255 -13.79808 -13.61342 -13.38254 -13.15478
-12.81807 -12.71920 -12.65709 -12.48032 -12.41890 -12.00795 -11.88768 -11.85390
-11.50300 -11.15224 -10.96768 -10.48285 -9.98238 -9.64441 -9.46950 -9.23107
-9.17983 -9.11215 -6.52219 -0.27549 0.20252 0.36112 1.21823 1.27910
1.40796 1.49092 1.54216 1.68288 1.80987 1.91600 2.27203 2.46585
2.52810 2.71170 2.92646 3.17741 3.43345 3.67123 3.99885 4.07281
4.20774 4.24740 4.26375 4.48314 4.55982 4.67467 4.73675 4.98211
4.99274 5.18905 5.21079 5.31113 5.36112 5.39204 5.53504 5.64742
5.73223 5.88031 5.88686 5.95509 6.51189 6.61597 6.64715 6.65595
6.92284 7.69902 7.84987
Molecular weight = 343.08amu
Principal moments of inertia in cm(-1)
A = 0.019617 B = 0.002365 C = 0.002244
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1426.989019 B =11835.886570 C =12473.577124
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.789 5.789
2 C 0.002 3.998
3 Si 1.118 2.882
4 H -0.259 1.259
5 H -0.258 1.258
6 H -0.268 1.268
7 C -0.465 4.465
8 H 0.083 0.917
9 C 0.089 3.911
10 C -0.172 4.172
11 C -0.169 4.169
12 S 0.028 5.972
13 C -0.469 4.469
14 C 0.592 3.408
15 O -0.601 6.601
16 N -0.730 5.730
17 C 0.173 3.827
18 C -0.084 4.084
19 C -0.100 4.100
20 C -0.072 4.072
21 C 0.043 3.957
22 N -0.525 5.525
23 C 0.465 3.535
24 O -0.442 6.442
25 N -0.588 5.588
26 H 0.439 0.561
27 C 0.047 3.953
28 C -0.086 4.086
29 H 0.290 0.710
30 H 0.128 0.872
31 H 0.183 0.817
32 H 0.398 0.602
33 H 0.063 0.937
34 H 0.069 0.931
35 H 0.147 0.853
36 H 0.148 0.852
37 H 0.435 0.565
38 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.672 -17.169 -5.044 17.972
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.412 5.412
2 C -0.218 4.218
3 Si 0.934 3.066
4 H -0.183 1.183
5 H -0.182 1.182
6 H -0.193 1.193
7 C -0.495 4.495
8 H 0.101 0.899
9 C 0.078 3.922
10 C -0.206 4.206
11 C -0.304 4.304
12 S 0.284 5.716
13 C -0.588 4.588
14 C 0.388 3.612
15 O -0.487 6.487
16 N -0.382 5.382
17 C 0.050 3.950
18 C -0.086 4.086
19 C -0.121 4.121
20 C -0.091 4.091
21 C -0.075 4.075
22 N -0.258 5.258
23 C 0.160 3.840
24 O -0.248 6.248
25 N -0.214 5.214
26 H 0.281 0.719
27 C -0.062 4.062
28 C -0.107 4.107
29 H 0.103 0.897
30 H 0.146 0.854
31 H 0.200 0.800
32 H 0.233 0.767
33 H 0.082 0.918
34 H 0.088 0.912
35 H 0.164 0.836
36 H 0.166 0.834
37 H 0.298 0.702
38 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges 2.683 -17.206 -5.354 18.218
hybrid contribution -1.313 -0.092 -0.509 1.411
sum 1.370 -17.298 -5.863 18.316
Atomic orbital electron populations
1.70529 1.08594 1.33764 1.28290 1.28731 0.95796 1.07534 0.89708
0.82983 0.74864 0.69555 0.79171 1.18332 1.18242 1.19297 1.20946
1.01463 0.93139 1.33994 0.89935 1.18352 0.90607 0.92887 0.90341
1.21468 0.99382 0.98053 1.01664 1.25484 1.04426 0.95711 1.04787
1.82421 1.29062 1.10279 1.49798 1.22972 1.15549 0.96015 1.24260
1.16981 0.82484 0.82036 0.79712 1.90636 1.53877 1.46727 1.57503
1.45689 1.35421 1.06727 1.50406 1.19988 0.90313 0.90780 0.93885
1.19495 0.98528 0.94073 0.96474 1.21012 0.98840 0.92861 0.99372
1.20420 0.98788 0.93692 0.96231 1.19132 1.00847 0.88664 0.98810
1.70647 1.22346 1.19969 1.12800 1.20411 0.92877 0.81233 0.89489
1.84801 1.53706 1.30511 1.55766 1.43316 1.42066 1.06173 1.29869
0.71909 1.18568 1.01064 0.92331 0.94216 1.19921 1.01123 0.89973
0.99682 0.89654 0.85447 0.80014 0.76689 0.91836 0.91238 0.83565
0.83436 0.70153 0.84408
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -40.15 12.48 21.89 0.27 -39.88 16
2 C 0.00 0.09 5.23 85.37 0.45 0.54 16
3 Si 1.12 43.13 29.99 68.60 2.06 45.19 16
4 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16
5 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16
6 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16
7 C -0.46 -25.82 8.44 23.33 0.20 -25.62 16
8 H 0.08 4.93 6.14 -2.91 -0.02 4.91 16
9 C 0.09 4.73 5.41 -20.89 -0.11 4.62 16
10 C -0.17 -8.01 8.19 22.61 0.19 -7.83 16
11 C -0.17 -6.63 11.07 66.64 0.74 -5.89 16
12 S 0.03 1.08 22.25 -56.49 -1.26 -0.17 16
13 C -0.47 -23.31 6.51 24.67 0.16 -23.15 16
14 C 0.59 28.76 7.76 86.32 0.67 29.43 16
15 O -0.60 -33.53 14.46 -4.54 -0.07 -33.60 16
16 N -0.73 -27.03 5.54 -471.20 -2.61 -29.64 16
17 C 0.17 5.32 5.79 85.63 0.50 5.81 16
18 C -0.08 -2.04 5.25 -19.82 -0.10 -2.15 16
19 C -0.10 -2.22 9.66 22.25 0.21 -2.01 16
20 C -0.07 -1.59 10.10 22.49 0.23 -1.37 16
21 C 0.04 1.07 7.22 39.41 0.28 1.35 16
22 N -0.52 -12.94 11.31 -306.46 -3.47 -16.41 16
23 C 0.47 8.53 9.39 179.76 1.69 10.22 16
24 O -0.44 -5.09 13.63 -85.70 -1.17 -6.25 16
25 N -0.59 -9.48 6.26 -302.48 -1.89 -11.38 16
26 H 0.44 4.09 8.96 -92.71 -0.83 3.26 16
27 C 0.05 1.04 7.30 38.74 0.28 1.32 16
28 C -0.09 -1.91 9.70 22.31 0.22 -1.69 16
29 H 0.29 15.08 6.22 -92.71 -0.58 14.51 16
30 H 0.13 5.91 6.77 -2.91 -0.02 5.90 16
31 H 0.18 5.52 8.06 -2.91 -0.02 5.49 16
32 H 0.40 13.43 7.54 -92.71 -0.70 12.73 16
33 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16
34 H 0.07 2.18 8.08 -2.38 -0.02 2.16 16
35 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16
36 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16
37 H 0.44 0.09 9.06 -74.06 -0.67 -0.59 16
38 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16
Total: -1.00 -73.32 347.34 -3.37 -76.69
By element:
Atomic # 1 Polarization: 32.71 SS G_CDS: -0.83 Total: 31.88 kcal
Atomic # 6 Polarization: -22.01 SS G_CDS: 5.59 Total: -16.42 kcal
Atomic # 7 Polarization: -89.61 SS G_CDS: -7.70 Total: -97.31 kcal
Atomic # 8 Polarization: -38.62 SS G_CDS: -1.23 Total: -39.85 kcal
Atomic # 14 Polarization: 43.13 SS G_CDS: 2.06 Total: 45.19 kcal
Atomic # 16 Polarization: 1.08 SS G_CDS: -1.26 Total: -0.17 kcal
Total: -73.32 -3.37 -76.69 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001623793838.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.766 kcal
(2) G-P(sol) polarization free energy of solvation -73.319 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.553 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.370 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.689 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.923 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.35 seconds