Wall clock time and date at job start Sat Apr 11 2020 06:47:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31551 * 1
3 3 Si 1.86801 * 119.99919 * 2 1
4 4 H 1.48496 * 109.47038 * 239.99740 * 3 2 1
5 5 H 1.48501 * 109.47179 * 359.97438 * 3 2 1
6 6 H 1.48504 * 109.47182 * 119.99622 * 3 2 1
7 7 C 1.38656 * 120.00389 * 179.97438 * 2 1 3
8 8 H 1.07993 * 120.00244 * 180.02562 * 7 2 1
9 9 O 1.34832 * 119.99318 * 0.02562 * 7 2 1
10 10 C 1.35758 * 116.99383 * 185.05641 * 9 7 2
11 11 C 1.38941 * 120.03843 * 174.13696 * 10 9 7
12 12 C 1.38107 * 120.04299 * 179.76843 * 11 10 9
13 13 C 1.38227 * 120.12767 * 0.51396 * 12 11 10
14 14 C 1.38798 * 120.07868 * 359.74509 * 13 12 11
15 15 O 1.35899 * 120.02558 * 179.97438 * 14 13 12
16 16 C 1.34936 * 118.00170 * 255.27499 * 15 14 13
17 17 O 1.21638 * 119.99700 * 355.00825 * 16 15 14
18 18 C 1.46144 * 119.99917 * 175.00894 * 16 15 14
19 19 C 1.35370 * 120.00225 * 179.97438 * 18 16 15
20 20 C 1.46280 * 120.00321 * 179.97438 * 19 18 16
21 21 C 1.38112 * 125.82831 * 179.72518 * 20 19 18
22 22 C 1.39795 * 106.83747 * 179.84463 * 21 20 19
23 23 C 1.37727 * 106.89656 * 0.40946 * 22 21 20
24 24 C 1.47028 * 125.76726 * 179.76405 * 23 22 21
25 25 N 1.34775 * 120.00096 * 179.97438 * 24 23 22
26 26 O 1.21651 * 120.00043 * 359.97438 * 24 23 22
27 27 O 1.34583 * 125.82628 * 0.02562 * 20 19 18
28 28 C 1.38637 * 119.95255 * 359.97438 * 14 13 12
29 29 H 0.97006 * 120.00274 * 0.02562 * 1 2 3
30 30 H 1.08000 * 119.97606 * 0.02562 * 11 10 9
31 31 H 1.08005 * 119.93534 * 180.23592 * 12 11 10
32 32 H 1.08000 * 119.95949 * 179.72182 * 13 12 11
33 33 H 1.08003 * 120.00277 * 359.97438 * 18 16 15
34 34 H 1.07998 * 119.99694 * 0.02562 * 19 18 16
35 35 H 1.08003 * 126.58008 * 359.97438 * 21 20 19
36 36 H 1.07996 * 126.55416 * 180.10780 * 22 21 20
37 37 H 0.97006 * 120.00224 * 359.97438 * 25 24 23
38 38 H 0.97000 * 120.00455 * 180.02562 * 25 24 23
39 39 H 1.08004 * 120.05926 * 180.02562 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2495 1.6178 0.0000
4 1 3.1033 1.6964 -1.2124
5 1 1.2845 2.7465 -0.0006
6 1 3.1032 1.6965 1.2126
7 6 2.0089 -1.2007 0.0005
8 1 3.0888 -1.2007 0.0010
9 8 1.3346 -2.3684 0.0005
10 6 2.0700 -3.5045 0.1077
11 6 1.4357 -4.7339 0.2369
12 6 2.1836 -5.8903 0.3411
13 6 3.5644 -5.8270 0.3279
14 6 4.2034 -4.6011 0.2045
15 8 5.5610 -4.5402 0.1921
16 6 6.1854 -4.0980 1.3036
17 8 5.5336 -3.6834 2.2432
18 6 7.6448 -4.1174 1.3785
19 6 8.2713 -3.6733 2.4933
20 6 9.7321 -3.6932 2.5685
21 6 10.4923 -3.2663 3.6396
22 6 11.8313 -3.4655 3.2908
23 6 11.8391 -3.9962 2.0199
24 6 13.0364 -4.3608 1.2482
25 7 12.9086 -4.8742 0.0087
26 8 14.1422 -4.1991 1.7286
27 8 10.5648 -4.1253 1.6036
28 6 3.4559 -3.4389 0.0938
29 1 -0.4851 0.8401 -0.0004
30 1 0.3570 -4.7857 0.2516
31 1 1.6887 -6.8454 0.4376
32 1 4.1466 -6.7326 0.4141
33 1 8.2236 -4.4859 0.5444
34 1 7.6926 -3.3052 3.3276
35 1 10.1231 -2.8590 4.5693
36 1 12.6948 -3.2411 3.8993
37 1 12.0268 -5.0036 -0.3743
38 1 13.6984 -5.1152 -0.5003
39 1 3.9514 -2.4841 -0.0027
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001436690087.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:47:27
Heat of formation + Delta-G solvation = -77.504705 kcal
Electronic energy + Delta-G solvation = -27283.223386 eV
Core-core repulsion = 22931.679766 eV
Total energy + Delta-G solvation = -4351.543619 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 343.098 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-43.11121 -40.86997 -39.68066 -38.87719 -37.27823 -35.78576 -34.63884 -34.14480
-33.51291 -32.34339 -30.20762 -29.50199 -28.93605 -25.98744 -25.36651 -23.57271
-22.36719 -21.86972 -21.52742 -20.80997 -19.89160 -18.90379 -18.39387 -18.05569
-17.44766 -17.25261 -16.92629 -16.18443 -15.99546 -15.88062 -15.17168 -14.93087
-14.89737 -14.47129 -14.26346 -14.08220 -13.65963 -13.61909 -13.60191 -13.23403
-12.99610 -12.73420 -12.64546 -11.95848 -11.61137 -11.36096 -11.11802 -11.10131
-11.01765 -10.91054 -10.58902 -10.54119 -10.46355 -10.36565 -10.33813 -9.57837
-8.90519 -8.65759 -8.22750 -7.40564 -6.51421 -4.11012 -0.20614 0.99565
1.68171 1.96160 2.02625 2.16105 2.62568 2.84198 2.91021 2.99779
3.10139 3.12554 3.14446 3.91930 4.07107 4.30557 4.37062 4.44419
4.67043 4.80908 5.01646 5.04390 5.11079 5.16065 5.30814 5.42613
5.54352 5.68468 5.74188 5.83663 5.95146 6.07358 6.10710 6.21965
6.29547 6.50263 6.72397 6.80832 6.93043 7.03563 7.08213 7.28381
7.51611 7.55189 7.91556 8.03306 8.93460 9.58868 10.65810
Molecular weight = 343.10amu
Principal moments of inertia in cm(-1)
A = 0.012256 B = 0.002218 C = 0.001988
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2284.068101 B =12623.147640 C =14084.559515
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.859 5.859
2 C 0.042 3.958
3 Si 0.941 3.059
4 H -0.269 1.269
5 H -0.276 1.276
6 H -0.269 1.269
7 C -0.394 4.394
8 H 0.091 0.909
9 O -0.169 6.169
10 C 0.163 3.837
11 C -0.184 4.184
12 C -0.065 4.065
13 C -0.211 4.211
14 C 0.121 3.879
15 O -0.292 6.292
16 C 0.487 3.513
17 O -0.480 6.480
18 C -0.150 4.150
19 C -0.001 4.001
20 C 0.036 3.964
21 C -0.176 4.176
22 C -0.116 4.116
23 C -0.074 4.074
24 C 0.611 3.389
25 N -0.842 5.842
26 O -0.521 6.521
27 O -0.152 6.152
28 C -0.230 4.230
29 H 0.272 0.728
30 H 0.124 0.876
31 H 0.123 0.877
32 H 0.115 0.885
33 H 0.147 0.853
34 H 0.170 0.830
35 H 0.168 0.832
36 H 0.167 0.833
37 H 0.409 0.591
38 H 0.411 0.589
39 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.313 -9.525 2.555 23.484
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.493 5.493
2 C -0.163 4.163
3 Si 0.765 3.235
4 H -0.194 1.194
5 H -0.201 1.201
6 H -0.194 1.194
7 C -0.470 4.470
8 H 0.108 0.892
9 O -0.072 6.072
10 C 0.108 3.892
11 C -0.204 4.204
12 C -0.084 4.084
13 C -0.230 4.230
14 C 0.080 3.920
15 O -0.207 6.207
16 C 0.333 3.667
17 O -0.367 6.367
18 C -0.169 4.169
19 C -0.019 4.019
20 C -0.016 4.016
21 C -0.195 4.195
22 C -0.136 4.136
23 C -0.128 4.128
24 C 0.395 3.605
25 N -0.405 5.405
26 O -0.398 6.398
27 O -0.048 6.048
28 C -0.250 4.250
29 H 0.082 0.918
30 H 0.142 0.858
31 H 0.141 0.859
32 H 0.133 0.867
33 H 0.165 0.835
34 H 0.187 0.813
35 H 0.186 0.814
36 H 0.185 0.815
37 H 0.238 0.762
38 H 0.243 0.757
39 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 21.190 -9.097 2.964 23.250
hybrid contribution 0.339 0.753 -0.360 0.901
sum 21.529 -8.344 2.604 23.236
Atomic orbital electron populations
1.70020 1.05951 1.27978 1.45368 1.25287 0.95865 0.98844 0.96268
0.85786 0.78789 0.79625 0.79327 1.19404 1.20109 1.19362 1.21271
0.91745 0.80720 1.53234 0.89199 1.84001 1.34001 1.11383 1.77820
1.19116 0.89277 0.88450 0.92321 1.20350 1.00072 0.90137 1.09810
1.20492 0.92539 0.97243 0.98093 1.20511 0.94699 0.95691 1.12119
1.18206 0.78363 0.93761 1.01668 1.84471 1.20537 1.77324 1.38417
1.21325 0.89255 0.75476 0.80658 1.90965 1.67517 1.41305 1.36882
1.22369 0.90710 1.03572 1.00226 1.21660 0.86810 0.94617 0.98813
1.21116 0.90308 1.02198 0.87979 1.22317 0.92194 1.04695 1.00276
1.22153 0.98394 0.98865 0.94211 1.22423 0.82210 1.11088 0.97036
1.16555 0.85761 0.76941 0.81198 1.43704 1.13518 1.66311 1.16969
1.90937 1.24316 1.54668 1.69899 1.84039 1.15386 1.64910 1.40468
1.21213 0.94287 0.98066 1.11443 0.91809 0.85809 0.85910 0.86680
0.83493 0.81272 0.81409 0.81516 0.76164 0.75713 0.84991
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -24.97 13.67 55.48 0.76 -24.21 16
2 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16
3 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16
4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16
5 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16
6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16
7 C -0.39 -11.07 9.49 30.89 0.29 -10.78 16
8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16
9 O -0.17 -4.81 9.76 0.02 0.00 -4.81 16
10 C 0.16 3.97 6.65 -39.13 -0.26 3.71 16
11 C -0.18 -3.82 9.99 -39.37 -0.39 -4.21 16
12 C -0.07 -1.14 10.03 -39.63 -0.40 -1.54 16
13 C -0.21 -3.76 9.99 -39.38 -0.39 -4.15 16
14 C 0.12 2.40 5.26 -39.23 -0.21 2.19 16
15 O -0.29 -5.06 9.97 -25.33 -0.25 -5.32 16
16 C 0.49 7.65 7.77 33.90 0.26 7.92 16
17 O -0.48 -9.12 15.81 -19.37 -0.31 -9.42 16
18 C -0.15 -1.61 9.80 -37.43 -0.37 -1.97 16
19 C 0.00 -0.01 9.64 -37.37 -0.36 -0.37 16
20 C 0.04 0.31 7.02 -36.40 -0.26 0.05 16
21 C -0.18 -1.30 10.88 -39.05 -0.42 -1.73 16
22 C -0.12 -0.93 10.64 -39.19 -0.42 -1.35 16
23 C -0.07 -0.65 7.16 -36.21 -0.26 -0.91 16
24 C 0.61 5.30 8.07 -12.70 -0.10 5.20 16
25 N -0.84 -4.17 8.87 30.34 0.27 -3.90 16
26 O -0.52 -6.18 17.70 5.23 0.09 -6.09 16
27 O -0.15 -1.30 10.01 3.88 0.04 -1.26 16
28 C -0.23 -5.25 8.66 -39.24 -0.34 -5.59 16
29 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16
30 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16
31 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16
32 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16
33 H 0.15 1.24 7.78 -52.48 -0.41 0.83 16
34 H 0.17 1.47 7.52 -52.49 -0.39 1.07 16
35 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16
36 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16
37 H 0.41 1.33 8.58 -40.82 -0.35 0.97 16
38 H 0.41 1.34 8.93 -40.82 -0.36 0.98 16
39 H 0.13 3.10 5.64 -52.48 -0.30 2.80 16
LS Contribution 365.46 15.07 5.51 5.51
Total: -1.00 -35.22 365.46 -5.97 -41.19
By element:
Atomic # 1 Polarization: 8.57 SS G_CDS: -3.34 Total: 5.23 kcal
Atomic # 6 Polarization: -8.75 SS G_CDS: -3.72 Total: -12.46 kcal
Atomic # 7 Polarization: -29.14 SS G_CDS: 1.03 Total: -28.11 kcal
Atomic # 8 Polarization: -26.47 SS G_CDS: -0.43 Total: -26.90 kcal
Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -35.22 -5.97 -41.19 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001436690087.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.319 kcal
(2) G-P(sol) polarization free energy of solvation -35.218 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.537 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.967 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.505 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds