Wall clock time and date at job start Sat Apr 11 2020 06:47:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31551 * 1
3 3 Si 1.86801 * 119.99919 * 2 1
4 4 H 1.48496 * 109.47038 * 239.99740 * 3 2 1
5 5 H 1.48501 * 109.47179 * 359.97438 * 3 2 1
6 6 H 1.48504 * 109.47182 * 119.99622 * 3 2 1
7 7 C 1.38656 * 120.00389 * 179.97438 * 2 1 3
8 8 H 1.07993 * 120.00244 * 180.02562 * 7 2 1
9 9 O 1.34832 * 119.99318 * 0.02562 * 7 2 1
10 10 C 1.35758 * 116.99383 * 185.05641 * 9 7 2
11 11 C 1.38941 * 120.03843 * 174.13696 * 10 9 7
12 12 C 1.38107 * 120.04299 * 179.76843 * 11 10 9
13 13 C 1.38227 * 120.12767 * 0.51396 * 12 11 10
14 14 C 1.38798 * 120.07868 * 359.74509 * 13 12 11
15 15 O 1.35899 * 120.02558 * 179.97438 * 14 13 12
16 16 C 1.34936 * 118.00170 * 255.27499 * 15 14 13
17 17 O 1.21638 * 119.99700 * 355.00825 * 16 15 14
18 18 C 1.46144 * 119.99917 * 175.00894 * 16 15 14
19 19 C 1.35370 * 120.00225 * 179.97438 * 18 16 15
20 20 C 1.46280 * 120.00321 * 179.97438 * 19 18 16
21 21 C 1.38112 * 125.82831 * 179.72518 * 20 19 18
22 22 C 1.39795 * 106.83747 * 179.84463 * 21 20 19
23 23 C 1.37727 * 106.89656 * 0.40946 * 22 21 20
24 24 C 1.47028 * 125.76726 * 179.76405 * 23 22 21
25 25 N 1.34775 * 120.00096 * 179.97438 * 24 23 22
26 26 O 1.21651 * 120.00043 * 359.97438 * 24 23 22
27 27 O 1.34583 * 125.82628 * 0.02562 * 20 19 18
28 28 C 1.38637 * 119.95255 * 359.97438 * 14 13 12
29 29 H 0.97006 * 120.00274 * 0.02562 * 1 2 3
30 30 H 1.08000 * 119.97606 * 0.02562 * 11 10 9
31 31 H 1.08005 * 119.93534 * 180.23592 * 12 11 10
32 32 H 1.08000 * 119.95949 * 179.72182 * 13 12 11
33 33 H 1.08003 * 120.00277 * 359.97438 * 18 16 15
34 34 H 1.07998 * 119.99694 * 0.02562 * 19 18 16
35 35 H 1.08003 * 126.58008 * 359.97438 * 21 20 19
36 36 H 1.07996 * 126.55416 * 180.10780 * 22 21 20
37 37 H 0.97006 * 120.00224 * 359.97438 * 25 24 23
38 38 H 0.97000 * 120.00455 * 180.02562 * 25 24 23
39 39 H 1.08004 * 120.05926 * 180.02562 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2495 1.6178 0.0000
4 1 3.1033 1.6964 -1.2124
5 1 1.2845 2.7465 -0.0006
6 1 3.1032 1.6965 1.2126
7 6 2.0089 -1.2007 0.0005
8 1 3.0888 -1.2007 0.0010
9 8 1.3346 -2.3684 0.0005
10 6 2.0700 -3.5045 0.1077
11 6 1.4357 -4.7339 0.2369
12 6 2.1836 -5.8903 0.3411
13 6 3.5644 -5.8270 0.3279
14 6 4.2034 -4.6011 0.2045
15 8 5.5610 -4.5402 0.1921
16 6 6.1854 -4.0980 1.3036
17 8 5.5336 -3.6834 2.2432
18 6 7.6448 -4.1174 1.3785
19 6 8.2713 -3.6733 2.4933
20 6 9.7321 -3.6932 2.5685
21 6 10.4923 -3.2663 3.6396
22 6 11.8313 -3.4655 3.2908
23 6 11.8391 -3.9962 2.0199
24 6 13.0364 -4.3608 1.2482
25 7 12.9086 -4.8742 0.0087
26 8 14.1422 -4.1991 1.7286
27 8 10.5648 -4.1253 1.6036
28 6 3.4559 -3.4389 0.0938
29 1 -0.4851 0.8401 -0.0004
30 1 0.3570 -4.7857 0.2516
31 1 1.6887 -6.8454 0.4376
32 1 4.1466 -6.7326 0.4141
33 1 8.2236 -4.4859 0.5444
34 1 7.6926 -3.3052 3.3276
35 1 10.1231 -2.8590 4.5693
36 1 12.6948 -3.2411 3.8993
37 1 12.0268 -5.0036 -0.3743
38 1 13.6984 -5.1152 -0.5003
39 1 3.9514 -2.4841 -0.0027
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001436690087.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:47:26
Heat of formation + Delta-G solvation = -102.133738 kcal
Electronic energy + Delta-G solvation = -27284.291381 eV
Core-core repulsion = 22931.679766 eV
Total energy + Delta-G solvation = -4352.611614 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 343.098 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-43.75459 -42.25685 -40.58853 -40.35667 -38.77786 -37.37499 -35.39556 -34.83987
-34.34537 -34.14846 -31.55999 -30.76655 -30.32843 -27.53986 -26.76289 -24.59963
-23.49279 -23.09835 -22.65168 -21.72466 -20.84457 -20.12515 -19.67765 -19.43555
-18.59901 -18.01272 -17.65678 -17.58056 -17.35111 -16.87666 -16.79508 -16.12361
-15.93048 -15.67342 -15.61355 -15.53805 -15.29293 -14.71331 -14.48740 -14.26539
-14.18090 -13.79320 -13.72347 -13.55611 -13.18668 -13.01355 -12.77437 -12.54190
-12.20068 -11.96679 -11.91272 -11.88047 -11.74235 -11.49276 -11.10927 -10.89102
-10.85944 -9.82170 -9.36340 -9.16782 -8.53234 -6.22653 -0.99471 0.11152
0.26336 0.54230 1.21670 1.28785 1.30422 1.40510 1.46645 1.66635
1.89941 1.97665 2.12967 2.39804 2.72137 3.04553 3.27502 3.40179
3.69639 3.73335 3.83319 3.98572 3.99308 4.17834 4.30830 4.40178
4.45209 4.52480 4.58042 4.72565 4.84532 4.92304 5.00937 5.02668
5.22738 5.34434 5.41369 5.49128 5.53292 5.53721 5.73740 5.93359
5.97787 6.21010 6.66653 6.90393 7.02963 7.65465 8.68716
Molecular weight = 343.10amu
Principal moments of inertia in cm(-1)
A = 0.012256 B = 0.002218 C = 0.001988
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2284.068101 B =12623.147640 C =14084.559515
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C -0.016 4.016
3 Si 1.014 2.986
4 H -0.257 1.257
5 H -0.264 1.264
6 H -0.261 1.261
7 C -0.418 4.418
8 H 0.092 0.908
9 O -0.220 6.220
10 C 0.126 3.874
11 C -0.193 4.193
12 C -0.048 4.048
13 C -0.189 4.189
14 C 0.114 3.886
15 O -0.292 6.292
16 C 0.489 3.511
17 O -0.523 6.523
18 C -0.169 4.169
19 C 0.034 3.966
20 C 0.016 3.984
21 C -0.157 4.157
22 C -0.125 4.125
23 C -0.078 4.078
24 C 0.608 3.392
25 N -0.821 5.821
26 O -0.559 6.559
27 O -0.152 6.152
28 C -0.248 4.248
29 H 0.276 0.724
30 H 0.131 0.869
31 H 0.177 0.823
32 H 0.158 0.842
33 H 0.171 0.829
34 H 0.174 0.826
35 H 0.194 0.806
36 H 0.178 0.822
37 H 0.420 0.580
38 H 0.421 0.579
39 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.821 -11.327 3.004 26.548
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.550 5.550
2 C -0.214 4.214
3 Si 0.832 3.168
4 H -0.181 1.181
5 H -0.189 1.189
6 H -0.186 1.186
7 C -0.494 4.494
8 H 0.109 0.891
9 O -0.126 6.126
10 C 0.075 3.925
11 C -0.212 4.212
12 C -0.065 4.065
13 C -0.208 4.208
14 C 0.073 3.927
15 O -0.207 6.207
16 C 0.337 3.663
17 O -0.412 6.412
18 C -0.187 4.187
19 C 0.015 3.985
20 C -0.036 4.036
21 C -0.176 4.176
22 C -0.145 4.145
23 C -0.131 4.131
24 C 0.393 3.607
25 N -0.385 5.385
26 O -0.439 6.439
27 O -0.048 6.048
28 C -0.268 4.268
29 H 0.085 0.915
30 H 0.149 0.851
31 H 0.194 0.806
32 H 0.176 0.824
33 H 0.188 0.812
34 H 0.192 0.808
35 H 0.211 0.789
36 H 0.195 0.805
37 H 0.251 0.749
38 H 0.254 0.746
39 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 23.720 -10.973 3.369 26.351
hybrid contribution -0.192 0.971 -0.431 1.080
sum 23.527 -10.002 2.938 25.733
Atomic orbital electron populations
1.70146 1.07780 1.29100 1.47935 1.26523 0.96897 1.02484 0.95524
0.84733 0.77626 0.74556 0.79856 1.18079 1.18850 1.18590 1.21648
0.92105 0.81572 1.54080 0.89113 1.83960 1.35331 1.12367 1.80972
1.19712 0.90219 0.88731 0.93833 1.20725 1.00989 0.89978 1.09487
1.21084 0.92401 0.98021 0.95033 1.21120 0.95282 0.96192 1.08202
1.18400 0.79646 0.93632 1.01008 1.84481 1.19050 1.77597 1.39549
1.22134 0.90804 0.73955 0.79365 1.90950 1.68644 1.43533 1.38108
1.22255 0.87560 1.06791 1.02138 1.21753 0.87239 0.91480 0.97992
1.21063 0.89909 1.03900 0.88701 1.22683 0.91664 1.02639 1.00590
1.22438 0.99142 0.98725 0.94227 1.22578 0.82287 1.10857 0.97415
1.16624 0.85200 0.76948 0.81935 1.43597 1.14695 1.64435 1.15767
1.90921 1.25502 1.56583 1.70925 1.84021 1.15241 1.64989 1.40509
1.21199 0.94132 0.98629 1.12869 0.91530 0.85113 0.80614 0.82393
0.81154 0.80834 0.78915 0.80455 0.74901 0.74568 0.87076
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -55.88 13.67 21.61 0.30 -55.58 16
2 C -0.02 -0.90 5.49 84.83 0.47 -0.43 16
3 Si 1.01 43.58 29.55 68.60 2.03 45.60 16
4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16
5 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16
6 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16
7 C -0.42 -25.04 9.49 67.92 0.64 -24.39 16
8 H 0.09 5.17 5.20 -2.91 -0.02 5.15 16
9 O -0.22 -13.40 9.76 -22.85 -0.22 -13.62 16
10 C 0.13 6.42 6.65 22.56 0.15 6.57 16
11 C -0.19 -7.93 9.99 22.41 0.22 -7.71 16
12 C -0.05 -1.50 10.03 22.24 0.22 -1.28 16
13 C -0.19 -6.09 9.99 22.40 0.22 -5.86 16
14 C 0.11 4.45 5.26 22.50 0.12 4.57 16
15 O -0.29 -9.80 9.97 -1.95 -0.02 -9.82 16
16 C 0.49 14.99 7.77 69.87 0.54 15.53 16
17 O -0.52 -19.95 15.81 19.38 0.31 -19.64 16
18 C -0.17 -3.31 9.80 23.66 0.23 -3.08 16
19 C 0.03 0.54 9.64 23.70 0.23 0.77 16
20 C 0.02 0.23 7.02 24.33 0.17 0.40 16
21 C -0.16 -1.86 10.88 22.62 0.25 -1.62 16
22 C -0.12 -1.72 10.64 22.53 0.24 -1.48 16
23 C -0.08 -1.20 7.16 24.46 0.18 -1.02 16
24 C 0.61 9.59 8.07 86.55 0.70 10.29 16
25 N -0.82 -6.49 8.87 -176.16 -1.56 -8.05 16
26 O -0.56 -12.74 17.70 -4.19 -0.07 -12.82 16
27 O -0.15 -2.21 10.01 -9.03 -0.09 -2.30 16
28 C -0.25 -11.77 8.66 22.49 0.19 -11.57 16
29 H 0.28 15.40 8.31 -92.70 -0.77 14.63 16
30 H 0.13 5.10 8.06 -2.91 -0.02 5.07 16
31 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16
32 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16
33 H 0.17 2.45 7.78 -2.91 -0.02 2.43 16
34 H 0.17 2.68 7.52 -2.91 -0.02 2.66 16
35 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16
36 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16
37 H 0.42 1.71 8.58 -92.70 -0.80 0.91 16
38 H 0.42 1.93 8.93 -92.71 -0.83 1.10 16
39 H 0.11 5.60 5.64 -2.91 -0.02 5.58 16
Total: -1.00 -83.01 365.46 4.97 -78.04
By element:
Atomic # 1 Polarization: 18.97 SS G_CDS: -0.47 Total: 18.51 kcal
Atomic # 6 Polarization: -25.10 SS G_CDS: 4.78 Total: -20.33 kcal
Atomic # 7 Polarization: -62.36 SS G_CDS: -1.27 Total: -63.63 kcal
Atomic # 8 Polarization: -58.10 SS G_CDS: -0.10 Total: -58.20 kcal
Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal
Total: -83.01 4.97 -78.04 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001436690087.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.090 kcal
(2) G-P(sol) polarization free energy of solvation -83.015 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.104 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.044 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.134 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds