Wall clock time and date at job start Sat Apr 11 2020 06:58:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86801 * 120.00129 * 2 1
4 4 H 1.48494 * 109.47216 * 270.00161 * 3 2 1
5 5 H 1.48501 * 109.46742 * 30.00299 * 3 2 1
6 6 H 1.48502 * 109.47053 * 149.99964 * 3 2 1
7 7 C 1.38817 * 119.99866 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99844 * 0.02562 * 7 2 1
9 9 N 1.36931 * 120.00068 * 179.97438 * 7 2 1
10 10 C 1.46498 * 120.00339 * 180.02562 * 9 7 2
11 11 C 1.53001 * 109.47495 * 180.02562 * 10 9 7
12 12 H 1.08993 * 109.47055 * 54.99842 * 11 10 9
13 13 C 1.53004 * 109.46863 * 294.99924 * 11 10 9
14 14 C 1.53001 * 109.46863 * 180.02562 * 13 11 10
15 15 C 1.52998 * 109.47064 * 60.00130 * 14 13 11
16 16 C 1.53004 * 109.47174 * 299.99679 * 15 14 13
17 17 C 1.52998 * 109.47064 * 175.00054 * 11 10 9
18 18 H 1.09002 * 109.47457 * 299.99589 * 17 11 10
19 19 N 1.46494 * 109.47321 * 59.99844 * 17 11 10
20 20 C 1.34774 * 120.00057 * 205.00094 * 19 17 11
21 21 O 1.21628 * 120.00272 * 359.97438 * 20 19 17
22 22 C 1.47231 * 120.00246 * 180.02562 * 20 19 17
23 23 N 1.30605 * 125.53071 * 0.26181 * 22 20 19
24 24 C 1.30736 * 115.90089 * 180.25467 * 23 22 20
25 25 Cl 1.73599 * 122.12718 * 179.75901 * 24 23 22
26 26 C 1.34338 * 115.75308 * 359.48149 * 24 23 22
27 27 S 1.71076 * 109.09312 * 0.27770 * 26 24 23
28 28 H 0.97003 * 119.99948 * 359.97438 * 1 2 3
29 29 H 0.96998 * 119.99823 * 359.97438 * 9 7 2
30 30 H 1.08996 * 109.47142 * 60.00037 * 10 9 7
31 31 H 1.09003 * 109.46691 * 300.00397 * 10 9 7
32 32 H 1.09000 * 109.46932 * 299.99613 * 13 11 10
33 33 H 1.08998 * 109.47069 * 59.99927 * 13 11 10
34 34 H 1.09002 * 109.46648 * 180.02562 * 14 13 11
35 35 H 1.09000 * 109.47030 * 299.99553 * 14 13 11
36 36 H 1.08993 * 109.47358 * 59.99973 * 15 14 13
37 37 H 1.09007 * 109.47104 * 180.02562 * 15 14 13
38 38 H 1.09000 * 109.46932 * 300.00585 * 16 15 14
39 39 H 1.08998 * 109.47069 * 180.02562 * 16 15 14
40 40 H 0.97005 * 120.00234 * 24.99789 * 19 17 11
41 41 H 1.07999 * 125.45718 * 180.25155 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 -1.4000
5 1 1.4477 2.6526 0.7001
6 1 3.5478 1.4401 0.7001
7 6 2.0102 -1.2022 -0.0005
8 1 1.4702 -2.1375 -0.0014
9 7 3.3795 -1.2023 -0.0011
10 6 4.1121 -2.4709 -0.0022
11 6 5.6163 -2.1914 -0.0020
12 1 5.8658 -1.5463 0.8404
13 6 6.0063 -1.4977 -1.3087
14 6 7.5107 -1.2188 -1.3088
15 6 8.2741 -2.5388 -1.1845
16 6 7.8841 -3.2326 0.1222
17 6 6.3802 -3.5112 0.1226
18 1 6.1025 -4.0054 1.0535
19 7 6.0449 -4.3783 -1.0095
20 6 6.1624 -5.7157 -0.8920
21 8 6.5474 -6.2028 0.1539
22 6 5.8259 -6.5872 -2.0300
23 7 5.4097 -6.1815 -3.1996
24 6 5.1601 -7.1206 -4.0742
25 17 4.5935 -6.7636 -5.6758
26 6 5.3755 -8.3792 -3.6568
27 16 5.9255 -8.3452 -2.0372
28 1 -0.4850 0.8401 0.0004
29 1 3.8645 -0.3622 -0.0014
30 1 3.8484 -3.0419 -0.8924
31 1 3.8490 -3.0431 0.8875
32 1 5.7568 -2.1430 -2.1511
33 1 5.4620 -0.5575 -1.3975
34 1 7.7884 -0.7242 -2.2396
35 1 7.7606 -0.5738 -0.4664
36 1 8.0242 -3.1838 -2.0269
37 1 9.3459 -2.3401 -1.1841
38 1 8.1341 -2.5875 0.9646
39 1 8.4284 -4.1728 0.2109
40 1 5.7381 -3.9899 -1.8438
41 1 5.2251 -9.2700 -4.2487
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001483439270.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:21
Heat of formation + Delta-G solvation = -15.298543 kcal
Electronic energy + Delta-G solvation = -25561.825352 eV
Core-core repulsion = 21821.425061 eV
Total energy + Delta-G solvation = -3740.400291 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 343.086 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.72234 -40.76406 -39.31563 -37.62640 -36.63108 -34.81947 -33.87503 -32.06384
-31.63079 -30.62142 -27.77898 -26.94866 -24.42343 -23.83386 -23.06831 -22.12048
-21.46036 -20.14630 -19.94292 -19.52546 -18.47572 -17.05842 -16.92196 -16.72455
-16.52552 -16.33571 -15.75893 -15.59705 -15.38579 -15.05713 -14.80105 -14.67478
-14.61714 -14.16399 -13.82336 -13.23356 -13.19801 -13.06712 -12.95739 -12.79538
-12.73221 -12.59642 -12.17303 -12.12863 -11.94751 -11.85627 -11.74626 -11.43009
-11.24554 -11.12538 -11.03777 -10.96316 -10.90670 -10.18549 -9.87529 -9.30594
-8.03516 -5.37437 -1.03769 -0.14829 0.09692 0.93755 1.09872 1.36972
1.41644 1.48885 1.92672 2.06002 2.48078 3.03551 3.27793 3.41948
3.72556 3.74871 3.80515 3.92820 3.99787 4.20653 4.29208 4.36181
4.43756 4.46732 4.54705 4.63733 4.71359 4.88880 4.99318 5.05830
5.13601 5.24280 5.28084 5.29964 5.37495 5.46418 5.55999 5.73646
5.98221 6.19988 6.33687 6.91088 7.07111 7.81892 8.03411 9.18350
Molecular weight = 343.09amu
Principal moments of inertia in cm(-1)
A = 0.010345 B = 0.003392 C = 0.002961
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2705.962669 B = 8252.313050 C = 9453.506026
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.985 5.985
2 C -0.063 4.063
3 Si 0.957 3.043
4 H -0.276 1.276
5 H -0.296 1.296
6 H -0.247 1.247
7 C -0.237 4.237
8 H 0.049 0.951
9 N -0.752 5.752
10 C 0.162 3.838
11 C -0.093 4.093
12 H 0.097 0.903
13 C -0.114 4.114
14 C -0.114 4.114
15 C -0.112 4.112
16 C -0.121 4.121
17 C 0.157 3.843
18 H 0.083 0.917
19 N -0.685 5.685
20 C 0.599 3.401
21 O -0.552 6.552
22 C -0.043 4.043
23 N -0.437 5.437
24 C 0.082 3.918
25 Cl -0.007 7.007
26 C -0.251 4.251
27 S 0.356 5.644
28 H 0.258 0.742
29 H 0.368 0.632
30 H 0.019 0.981
31 H 0.014 0.986
32 H 0.057 0.943
33 H 0.056 0.944
34 H 0.071 0.929
35 H 0.072 0.928
36 H 0.054 0.946
37 H 0.078 0.922
38 H 0.090 0.910
39 H 0.065 0.935
40 H 0.412 0.588
41 H 0.230 0.770
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.622 -16.466 -7.824 28.281
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.636 5.636
2 C -0.255 4.255
3 Si 0.784 3.216
4 H -0.202 1.202
5 H -0.222 1.222
6 H -0.171 1.171
7 C -0.368 4.368
8 H 0.067 0.933
9 N -0.398 5.398
10 C 0.036 3.964
11 C -0.112 4.112
12 H 0.115 0.885
13 C -0.152 4.152
14 C -0.151 4.151
15 C -0.150 4.150
16 C -0.159 4.159
17 C 0.053 3.947
18 H 0.101 0.899
19 N -0.337 5.337
20 C 0.381 3.619
21 O -0.430 6.430
22 C -0.317 4.317
23 N -0.157 5.157
24 C -0.083 4.083
25 Cl 0.021 6.979
26 C -0.394 4.394
27 S 0.610 5.390
28 H 0.067 0.933
29 H 0.202 0.798
30 H 0.037 0.963
31 H 0.032 0.968
32 H 0.076 0.924
33 H 0.075 0.925
34 H 0.090 0.910
35 H 0.091 0.909
36 H 0.073 0.927
37 H 0.097 0.903
38 H 0.108 0.892
39 H 0.084 0.916
40 H 0.250 0.750
41 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges 21.899 -17.037 -6.530 28.504
hybrid contribution -1.181 1.486 -1.605 2.486
sum 20.718 -15.551 -8.135 27.153
Atomic orbital electron populations
1.69901 1.07309 1.26773 1.59587 1.25546 0.96134 1.01426 1.02373
0.85380 0.78809 0.79179 0.78277 1.20187 1.22239 1.17118 1.18997
0.82888 0.93292 1.41647 0.93311 1.42628 1.02288 1.04031 1.90873
1.20742 0.90766 0.87330 0.97577 1.21560 0.92938 0.96265 1.00412
0.88466 1.21558 0.97242 1.00263 0.96090 1.21538 0.93092 0.97671
1.02795 1.21474 1.00433 0.96101 0.96970 1.21862 0.93136 1.01337
0.99588 1.21046 0.95746 0.88978 0.88948 0.89908 1.45935 1.65210
1.04781 1.17757 1.16771 0.77792 0.82456 0.84878 1.90840 1.48612
1.75188 1.28367 1.27391 1.10126 0.98638 0.95554 1.66177 1.11854
1.37107 1.00585 1.20567 1.07397 0.88828 0.91497 1.98415 1.87210
1.95729 1.16578 1.27145 1.06813 1.02439 1.02978 1.83945 1.52054
1.00087 1.02934 0.93303 0.79755 0.96311 0.96811 0.92424 0.92539
0.91039 0.90916 0.92731 0.90317 0.89186 0.91646 0.74983 0.75379
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.99 -64.26 13.97 21.65 0.30 -63.96 16
2 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16
3 Si 0.96 45.44 27.73 68.60 1.90 47.34 16
4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16
6 H -0.25 -10.38 6.52 99.48 0.65 -9.74 16
7 C -0.24 -13.90 10.47 84.04 0.88 -13.01 16
8 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16
9 N -0.75 -35.32 5.13 -343.46 -1.76 -37.08 16
10 C 0.16 6.25 5.42 86.38 0.47 6.72 16
11 C -0.09 -2.56 2.02 -10.79 -0.02 -2.58 16
12 H 0.10 2.56 8.14 -2.39 -0.02 2.55 16
13 C -0.11 -2.89 4.91 30.60 0.15 -2.74 16
14 C -0.11 -2.15 5.92 30.59 0.18 -1.97 16
15 C -0.11 -1.96 5.76 30.59 0.18 -1.78 16
16 C -0.12 -2.33 5.60 30.58 0.17 -2.16 16
17 C 0.16 3.86 2.23 44.97 0.10 3.96 16
18 H 0.08 2.25 7.58 -2.39 -0.02 2.24 16
19 N -0.69 -17.51 3.61 -446.08 -1.61 -19.12 16
20 C 0.60 15.97 7.77 86.61 0.67 16.64 16
21 O -0.55 -16.58 16.60 -4.12 -0.07 -16.65 16
22 C -0.04 -1.01 7.46 87.24 0.65 -0.36 16
23 N -0.44 -10.78 10.25 -181.16 -1.86 -12.64 16
24 C 0.08 1.67 7.22 83.96 0.61 2.28 16
25 Cl -0.01 -0.15 29.20 -2.72 -0.08 -0.22 16
26 C -0.25 -3.41 10.93 66.93 0.73 -2.68 16
27 S 0.36 5.36 23.03 -56.49 -1.30 4.06 16
28 H 0.26 15.98 8.31 -92.71 -0.77 15.20 16
29 H 0.37 16.15 4.71 -92.71 -0.44 15.71 16
30 H 0.02 0.76 7.61 -2.39 -0.02 0.75 16
31 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16
32 H 0.06 1.50 6.51 -2.39 -0.02 1.48 16
33 H 0.06 1.64 7.18 -2.39 -0.02 1.62 16
34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
36 H 0.05 1.04 7.60 -2.39 -0.02 1.02 16
37 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16
38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16
39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16
40 H 0.41 10.68 6.32 -92.70 -0.59 10.09 16
41 H 0.23 1.34 8.06 -2.91 -0.02 1.31 16
Total: -1.00 -73.24 360.39 0.76 -72.48
By element:
Atomic # 1 Polarization: 26.81 SS G_CDS: 0.00 Total: 26.81 kcal
Atomic # 6 Polarization: -6.26 SS G_CDS: 5.23 Total: -1.03 kcal
Atomic # 7 Polarization: -127.87 SS G_CDS: -4.93 Total: -132.80 kcal
Atomic # 8 Polarization: -16.58 SS G_CDS: -0.07 Total: -16.65 kcal
Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal
Atomic # 16 Polarization: 5.36 SS G_CDS: -1.30 Total: 4.06 kcal
Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.22 kcal
Total: -73.24 0.76 -72.48 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001483439270.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.183 kcal
(2) G-P(sol) polarization free energy of solvation -73.241 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.058 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.481 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.299 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds