Wall clock time and date at job start Sat Apr 11 2020 06:49:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34746 * 117.00023 * 2 1
4 4 O 1.21510 * 120.00398 * 0.02562 * 3 2 1
5 5 C 1.47404 * 119.99654 * 179.97438 * 3 2 1
6 6 C 1.39769 * 120.19966 * 0.02964 * 5 3 2
7 7 C 1.37761 * 119.90314 * 179.72334 * 6 5 3
8 8 S 1.76198 * 119.84582 * 180.27180 * 7 6 5
9 9 O 1.42096 * 106.40573 * 23.79378 * 8 7 6
10 10 O 1.42108 * 106.40227 * 156.71469 * 8 7 6
11 11 N 1.65602 * 107.21855 * 270.25391 * 8 7 6
12 12 C 1.46494 * 120.00058 * 64.99613 * 11 8 7
13 13 H 1.09000 * 109.47306 * 335.01021 * 12 11 8
14 14 C 1.53002 * 109.46813 * 95.00309 * 12 11 8
15 15 C 1.50704 * 109.47611 * 215.00300 * 12 11 8
16 16 H 1.08001 * 119.99628 * 359.97438 * 15 12 11
17 17 C 1.37870 * 120.00046 * 180.02562 * 15 12 11
18 18 N 1.31516 * 120.00424 * 0.02562 * 17 15 12
19 19 Si 1.86800 * 119.99850 * 180.02562 * 17 15 12
20 20 H 1.48496 * 109.47564 * 59.99877 * 19 17 15
21 21 H 1.48504 * 109.47394 * 180.02562 * 19 17 15
22 22 H 1.48500 * 109.46948 * 299.99634 * 19 17 15
23 23 C 1.38561 * 120.30901 * 0.52712 * 7 6 5
24 24 C 1.38051 * 120.40014 * 359.44399 * 23 7 6
25 25 C 1.38707 * 120.09293 * 0.29915 * 24 23 7
26 26 O 1.35641 * 120.15494 * 179.97438 * 25 24 23
27 27 C 1.42894 * 117.00381 * 0.02562 * 26 25 24
28 28 H 1.09001 * 109.47230 * 300.00418 * 1 2 3
29 29 H 1.09003 * 109.46912 * 59.99336 * 1 2 3
30 30 H 1.08996 * 109.47712 * 179.97438 * 1 2 3
31 31 H 1.07998 * 120.04723 * 359.97438 * 6 5 3
32 32 H 0.97002 * 120.00140 * 245.00776 * 11 8 7
33 33 H 1.09000 * 109.47001 * 180.02562 * 14 12 11
34 34 H 1.09004 * 109.47450 * 299.99796 * 14 12 11
35 35 H 1.08996 * 109.47299 * 60.00451 * 14 12 11
36 36 H 0.96998 * 120.00360 * 180.02562 * 18 17 15
37 37 H 1.08002 * 119.80278 * 179.72584 * 23 7 6
38 38 H 1.08009 * 119.95426 * 180.28123 * 24 23 7
39 39 H 1.09006 * 109.46729 * 60.00116 * 27 26 25
40 40 H 1.08997 * 109.47443 * 179.97438 * 27 26 25
41 41 H 1.08999 * 109.46942 * 300.00354 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0637 1.2006 0.0000
4 8 1.4020 2.2197 0.0005
5 6 3.5358 1.2776 0.0006
6 6 4.3010 0.1081 0.0005
7 6 5.6763 0.1872 -0.0047
8 16 6.6395 -1.2882 -0.0121
9 8 5.8124 -2.3048 -0.5612
10 8 7.9053 -0.9384 -0.5551
11 7 6.9079 -1.7063 1.5676
12 6 5.7838 -2.0917 2.4244
13 1 4.8663 -1.6427 2.0440
14 6 5.6432 -3.6152 2.4266
15 6 6.0345 -1.6084 3.8297
16 1 6.9407 -1.0685 4.0615
17 6 5.1074 -1.8563 4.8196
18 7 4.0045 -2.5150 4.5377
19 14 5.4178 -1.2566 6.5613
20 1 5.5533 0.2222 6.5590
21 1 4.2789 -1.6484 7.4301
22 1 6.6681 -1.8675 7.0797
23 6 6.3058 1.4216 0.0011
24 6 5.5624 2.5848 0.0006
25 6 4.1766 2.5246 0.0006
26 8 3.4450 3.6667 0.0006
27 6 4.1670 4.8998 0.0002
28 1 -0.3634 0.5139 0.8899
29 1 -0.3633 0.5140 -0.8900
30 1 -0.3634 -1.0276 -0.0005
31 1 3.8148 -0.8563 0.0004
32 1 7.8093 -1.6960 1.9257
33 1 4.8065 -3.9019 3.0637
34 1 5.4618 -3.9648 1.4102
35 1 6.5605 -4.0643 2.8071
36 1 3.3521 -2.6891 5.2341
37 1 7.3845 1.4740 0.0014
38 1 6.0605 3.5432 0.0006
39 1 4.7937 4.9535 -0.8901
40 1 3.4639 5.7327 -0.0002
41 1 4.7944 4.9538 0.8899
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000352586618.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:05
Heat of formation + Delta-G solvation = -188.981529 kcal
Electronic energy + Delta-G solvation = -28835.506151 eV
Core-core repulsion = 24614.572485 eV
Total energy + Delta-G solvation = -4220.933666 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.101 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-41.98537 -40.75693 -38.69120 -38.28291 -37.46813 -37.20056 -36.86215 -34.08168
-32.99464 -31.70627 -30.08460 -28.92644 -28.21480 -27.18520 -25.40658 -23.82410
-22.84086 -22.50377 -20.47592 -19.67365 -19.17554 -18.79676 -18.36529 -17.85903
-17.51826 -17.41046 -17.21897 -16.94918 -16.78039 -16.21782 -15.75318 -15.31615
-14.91981 -14.58555 -14.50458 -14.46660 -14.43273 -13.96120 -13.80006 -13.47170
-13.30623 -13.21392 -13.07182 -12.99459 -12.95672 -12.78204 -12.46665 -12.39481
-12.36524 -12.17454 -12.08441 -11.95777 -11.83623 -11.57081 -11.06743 -10.55585
-10.42491 -10.09574 -9.84908 -8.09951 -6.23878 -0.61382 -0.46990 -0.19802
1.25858 1.47259 1.47986 1.54828 1.62109 1.98264 2.10822 2.36102
2.48971 2.83575 3.20061 3.23653 3.52507 3.59886 3.81301 4.00594
4.22939 4.25321 4.26884 4.30739 4.34947 4.42531 4.53148 4.57865
4.65833 4.69459 4.83060 4.84091 4.96862 5.16392 5.21847 5.21927
5.31018 5.63378 5.79060 6.06969 6.08518 6.13412 6.46813 6.60570
6.87237 7.45580 8.94838
Molecular weight = 343.10amu
Principal moments of inertia in cm(-1)
A = 0.008529 B = 0.004924 C = 0.004266
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3282.020481 B = 5684.550434 C = 6561.451952
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.366 6.366
3 C 0.511 3.489
4 O -0.515 6.515
5 C -0.210 4.210
6 C 0.072 3.928
7 C -0.729 4.729
8 S 2.711 3.289
9 O -0.988 6.988
10 O -0.981 6.981
11 N -1.097 6.097
12 C 0.278 3.722
13 H 0.025 0.975
14 C -0.153 4.153
15 C -0.537 4.537
16 H 0.071 0.929
17 C 0.019 3.981
18 N -0.912 5.912
19 Si 0.955 3.045
20 H -0.273 1.273
21 H -0.289 1.289
22 H -0.268 1.268
23 C 0.055 3.945
24 C -0.229 4.229
25 C 0.234 3.766
26 O -0.303 6.303
27 C 0.003 3.997
28 H 0.061 0.939
29 H 0.072 0.928
30 H 0.130 0.870
31 H 0.149 0.851
32 H 0.419 0.581
33 H 0.070 0.930
34 H 0.030 0.970
35 H 0.038 0.962
36 H 0.264 0.736
37 H 0.177 0.823
38 H 0.191 0.809
39 H 0.084 0.916
40 H 0.121 0.879
41 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.706 12.007 -8.736 14.866
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.282 6.282
3 C 0.357 3.643
4 O -0.406 6.406
5 C -0.213 4.213
6 C 0.052 3.948
7 C -0.817 4.817
8 S 2.802 3.198
9 O -0.978 6.978
10 O -0.972 6.972
11 N -0.858 5.858
12 C 0.172 3.828
13 H 0.043 0.957
14 C -0.213 4.213
15 C -0.576 4.576
16 H 0.089 0.911
17 C -0.182 4.182
18 N -0.551 5.551
19 Si 0.781 3.219
20 H -0.198 1.198
21 H -0.215 1.215
22 H -0.193 1.193
23 C 0.036 3.964
24 C -0.248 4.248
25 C 0.184 3.816
26 O -0.213 6.213
27 C -0.090 4.090
28 H 0.080 0.920
29 H 0.091 0.909
30 H 0.148 0.852
31 H 0.166 0.834
32 H 0.255 0.745
33 H 0.089 0.911
34 H 0.049 0.951
35 H 0.058 0.942
36 H 0.073 0.927
37 H 0.194 0.806
38 H 0.208 0.792
39 H 0.103 0.897
40 H 0.139 0.861
41 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 0.175 11.827 -9.466 15.149
hybrid contribution -0.397 0.662 1.522 1.706
sum -0.222 12.489 -7.944 14.803
Atomic orbital electron populations
1.23593 0.73967 1.05850 1.02800 1.86589 1.25707 1.31918 1.84019
1.20911 0.88874 0.81770 0.72733 1.90813 1.66792 1.36124 1.46824
1.18637 0.89957 0.92884 1.19785 1.21078 0.92153 0.98258 0.83267
1.30821 1.06785 1.20279 1.23773 1.01074 0.72663 0.73542 0.72547
1.93535 1.70505 1.56151 1.77644 1.93511 1.40939 1.85009 1.77719
1.55362 1.17167 1.83219 1.30098 1.18269 0.83053 0.92073 0.89384
0.95730 1.22151 1.01701 0.98221 0.99227 1.21577 1.06013 1.36311
0.93695 0.91056 1.25634 0.94882 0.95151 1.02489 1.69989 1.09816
1.40675 1.34611 0.85656 0.77697 0.78740 0.79800 1.19843 1.21461
1.19343 1.21314 1.02058 0.89360 0.83653 1.21687 0.90707 1.01870
1.10502 1.19375 0.90966 0.85502 0.85750 1.86329 1.36317 1.13620
1.85021 1.23694 0.99426 0.82174 1.03713 0.91985 0.90949 0.85176
0.83375 0.74529 0.91131 0.95067 0.94239 0.92691 0.80553 0.79220
0.89723 0.86069 0.90362
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.75 10.57 113.37 1.20 1.95 16
2 O -0.37 -12.32 9.82 -56.56 -0.56 -12.87 16
3 C 0.51 18.40 7.89 70.24 0.55 18.95 16
4 O -0.51 -19.49 14.95 26.80 0.40 -19.09 16
5 C -0.21 -7.23 5.89 -20.02 -0.12 -7.35 16
6 C 0.07 2.56 8.43 22.53 0.19 2.75 16
7 C -0.73 -23.81 5.81 22.23 0.13 -23.68 16
8 S 2.71 96.40 5.64 -56.49 -0.32 96.08 16
9 O -0.99 -40.96 16.53 -128.00 -2.12 -43.07 16
10 O -0.98 -34.56 17.27 -128.00 -2.21 -36.77 16
11 N -1.10 -41.57 5.46 -172.52 -0.94 -42.51 16
12 C 0.28 12.94 2.76 44.25 0.12 13.06 16
13 H 0.02 1.24 7.20 -2.39 -0.02 1.22 16
14 C -0.15 -7.26 9.29 71.98 0.67 -6.59 16
15 C -0.54 -26.70 8.76 25.60 0.22 -26.47 16
16 H 0.07 3.36 7.81 -2.91 -0.02 3.33 16
17 C 0.02 0.97 5.30 84.65 0.45 1.42 16
18 N -0.91 -49.53 11.32 21.44 0.24 -49.28 16
19 Si 0.96 40.91 29.54 68.60 2.03 42.94 16
20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16
21 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16
22 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16
23 C 0.06 1.42 9.50 22.30 0.21 1.63 16
24 C -0.23 -5.13 9.03 22.34 0.20 -4.93 16
25 C 0.23 6.74 6.70 22.86 0.15 6.89 16
26 O -0.30 -8.10 8.57 -68.62 -0.59 -8.68 16
27 C 0.00 0.05 9.81 113.37 1.11 1.16 16
28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16
30 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16
31 H 0.15 5.51 7.16 -2.91 -0.02 5.49 16
32 H 0.42 13.97 8.83 -96.74 -0.85 13.11 16
33 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16
34 H 0.03 1.40 7.64 -2.38 -0.02 1.38 16
35 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16
36 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16
37 H 0.18 3.47 7.60 -2.91 -0.02 3.45 16
38 H 0.19 2.42 6.30 -2.91 -0.02 2.40 16
39 H 0.08 0.80 7.66 -2.38 -0.02 0.78 16
40 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16
41 H 0.08 0.87 7.66 -2.39 -0.02 0.85 16
Total: -1.00 -71.44 363.09 1.26 -70.17
By element:
Atomic # 1 Polarization: 24.07 SS G_CDS: 0.23 Total: 24.30 kcal
Atomic # 6 Polarization: -26.31 SS G_CDS: 5.10 Total: -21.21 kcal
Atomic # 7 Polarization: -91.09 SS G_CDS: -0.70 Total: -91.79 kcal
Atomic # 8 Polarization: -115.42 SS G_CDS: -5.07 Total: -120.49 kcal
Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal
Atomic # 16 Polarization: 96.40 SS G_CDS: -0.32 Total: 96.08 kcal
Total: -71.44 1.26 -70.17 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000352586618.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -118.808 kcal
(2) G-P(sol) polarization free energy of solvation -71.438 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.246 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) -188.982 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds