Wall clock time and date at job start Sat Apr 11 2020 06:48:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08998 * 109.46758 * 2 1
4 4 C 1.50700 * 109.47194 * 119.99798 * 2 1 3
5 5 H 1.07999 * 119.99256 * 116.69007 * 4 2 1
6 6 C 1.37868 * 120.00303 * 296.69370 * 4 2 1
7 7 N 1.31520 * 120.00090 * 352.44338 * 6 4 2
8 8 Si 1.86805 * 120.00195 * 172.71443 * 6 4 2
9 9 H 1.48503 * 109.47054 * 264.79579 * 8 6 4
10 10 H 1.48500 * 109.46575 * 24.79344 * 8 6 4
11 11 H 1.48491 * 109.47049 * 144.79629 * 8 6 4
12 12 C 1.50697 * 109.47254 * 240.00375 * 2 1 3
13 13 O 1.20825 * 119.99929 * 239.99773 * 12 2 1
14 14 O 1.34231 * 120.00011 * 59.99808 * 12 2 1
15 15 C 1.45204 * 116.99927 * 180.02562 * 14 12 2
16 16 C 1.52998 * 109.47298 * 179.97438 * 15 14 12
17 17 O 1.42904 * 109.46967 * 64.99740 * 16 15 14
18 18 C 1.35897 * 116.99742 * 180.02562 * 17 16 15
19 19 C 1.38734 * 120.05632 * 359.72585 * 18 17 16
20 20 C 1.38145 * 119.94108 * 179.74589 * 19 18 17
21 21 C 1.38271 * 120.05903 * 0.50740 * 20 19 18
22 22 S 1.76197 * 119.94729 * 179.74258 * 21 20 19
23 23 N 1.65595 * 107.22025 * 270.02401 * 22 21 20
24 24 O 1.42105 * 106.39971 * 23.56534 * 22 21 20
25 25 O 1.42100 * 106.39880 * 156.47935 * 22 21 20
26 26 C 1.38272 * 120.10774 * 359.76870 * 21 20 19
27 27 C 1.38143 * 120.05268 * 359.97438 * 26 21 20
28 28 H 1.09001 * 109.47192 * 57.78356 * 1 2 3
29 29 H 1.08997 * 109.46811 * 177.78416 * 1 2 3
30 30 H 1.09003 * 109.47025 * 297.77973 * 1 2 3
31 31 H 0.96998 * 120.00239 * 180.27341 * 7 6 4
32 32 H 1.09004 * 109.46741 * 299.99980 * 15 14 12
33 33 H 1.08998 * 109.46870 * 59.99730 * 15 14 12
34 34 H 1.08999 * 109.47281 * 184.99876 * 16 15 14
35 35 H 1.09005 * 109.46899 * 305.00345 * 16 15 14
36 36 H 1.07995 * 120.03042 * 359.97438 * 19 18 17
37 37 H 1.07999 * 119.97278 * 180.23245 * 20 19 18
38 38 H 0.96999 * 119.99862 * 359.97438 * 23 22 21
39 39 H 0.97002 * 119.99655 * 180.02562 * 23 22 21
40 40 H 1.07998 * 119.96972 * 180.02562 * 26 21 20
41 41 H 1.08011 * 120.02364 * 179.97438 * 27 26 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2305
5 1 2.6085 -1.6186 1.1322
6 6 1.7566 -0.2009 2.4815
7 7 1.1861 0.9781 2.6003
8 14 2.1999 -1.1820 4.0082
9 1 1.0172 -1.9593 4.4579
10 1 3.3131 -2.1127 3.6923
11 1 2.6219 -0.2538 5.0877
12 6 2.0324 -0.7103 -1.2305
13 8 2.7271 -1.6927 -1.1196
14 8 1.7081 -0.2517 -2.4496
15 6 2.2269 -0.9861 -3.5897
16 6 1.7549 -0.3196 -4.8835
17 8 2.3270 0.9861 -4.9828
18 6 2.0060 1.7184 -6.0816
19 6 1.1623 1.1889 -7.0473
20 6 0.8334 1.9374 -8.1608
21 6 1.3525 3.2092 -8.3186
22 16 0.9364 4.1586 -9.7433
23 7 2.0657 3.8189 -10.9059
24 8 -0.2990 3.6443 -10.2215
25 8 1.1250 5.5211 -9.3866
26 6 2.1982 3.7369 -7.3603
27 6 2.5260 2.9945 -6.2424
28 1 -0.3633 0.5479 -0.8694
29 1 -0.3633 -1.0269 -0.0397
30 1 -0.3633 0.4790 0.9092
31 1 0.9956 1.3383 3.4806
32 1 3.3164 -0.9858 -3.5569
33 1 1.8627 -2.0129 -3.5566
34 1 2.0693 -0.9199 -5.7372
35 1 0.6678 -0.2402 -4.8756
36 1 0.7601 0.1939 -6.9268
37 1 0.1736 1.5272 -8.9111
38 1 2.7819 3.1923 -10.7178
39 1 2.0113 4.2470 -11.7746
40 1 2.6021 4.7307 -7.4856
41 1 3.1869 3.4070 -5.4944
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001327136952.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:25
Heat of formation + Delta-G solvation = -178.844355 kcal
Electronic energy + Delta-G solvation = -26535.279839 eV
Core-core repulsion = 22314.785754 eV
Total energy + Delta-G solvation = -4220.494085 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.101 amu
Computer time = 2.45 seconds
Orbital eigenvalues (eV)
-40.64547 -39.63388 -37.96653 -37.44828 -36.13152 -35.84177 -33.90731 -33.59019
-31.89764 -31.33224 -30.67064 -29.74122 -25.22699 -24.63252 -23.41828 -23.15861
-21.89314 -19.96599 -19.90587 -19.01738 -18.42408 -17.72946 -17.03723 -16.77166
-16.36235 -16.26190 -15.90952 -15.83064 -15.46561 -15.39318 -15.03222 -14.34450
-13.99803 -13.96408 -13.54250 -13.33885 -12.94117 -12.67439 -12.53731 -12.49662
-12.40188 -12.28080 -12.00151 -11.67359 -11.48760 -11.28345 -11.22847 -11.06983
-10.92242 -10.90516 -10.71652 -10.43799 -10.20175 -10.09649 -9.56804 -9.19633
-9.10741 -8.99056 -8.48683 -6.16110 -4.18769 0.05023 0.48058 0.84417
2.66894 2.77143 3.04378 3.21655 3.26518 3.27858 3.34522 3.38993
3.43130 4.08670 4.29077 4.37897 4.42231 4.60963 4.73964 4.81019
4.90658 4.99236 5.09240 5.18931 5.30198 5.43136 5.48744 5.55374
5.56926 5.65699 5.80558 6.03581 6.20019 6.56964 6.57849 6.76313
6.78013 6.91871 7.09122 7.37311 7.61838 7.86427 8.06862 8.75797
8.89871 9.46000 10.93621
Molecular weight = 343.10amu
Principal moments of inertia in cm(-1)
A = 0.027440 B = 0.001795 C = 0.001746
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1020.150942 B =15596.789967 C =16035.413236
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.057 3.943
3 H 0.069 0.931
4 C -0.515 4.515
5 H 0.076 0.924
6 C 0.063 3.937
7 N -0.890 5.890
8 Si 0.903 3.097
9 H -0.279 1.279
10 H -0.272 1.272
11 H -0.286 1.286
12 C 0.467 3.533
13 O -0.517 6.517
14 O -0.361 6.361
15 C 0.062 3.938
16 C 0.059 3.941
17 O -0.294 6.294
18 C 0.198 3.802
19 C -0.234 4.234
20 C 0.023 3.977
21 C -0.721 4.721
22 S 2.707 3.293
23 N -1.252 6.252
24 O -0.967 6.967
25 O -0.966 6.966
26 C 0.020 3.980
27 C -0.172 4.172
28 H 0.026 0.974
29 H 0.032 0.968
30 H 0.084 0.916
31 H 0.264 0.736
32 H 0.077 0.923
33 H 0.090 0.910
34 H 0.085 0.915
35 H 0.081 0.919
36 H 0.140 0.860
37 H 0.145 0.855
38 H 0.417 0.583
39 H 0.419 0.581
40 H 0.149 0.851
41 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.550 3.266 -27.372 27.609
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.038 3.962
3 H 0.087 0.913
4 C -0.553 4.553
5 H 0.094 0.906
6 C -0.139 4.139
7 N -0.528 5.528
8 Si 0.730 3.270
9 H -0.205 1.205
10 H -0.196 1.196
11 H -0.211 1.211
12 C 0.312 3.688
13 O -0.404 6.404
14 O -0.279 6.279
15 C -0.013 4.013
16 C -0.016 4.016
17 O -0.206 6.206
18 C 0.150 3.850
19 C -0.254 4.254
20 C 0.004 3.996
21 C -0.810 4.810
22 S 2.796 3.204
23 N -0.926 5.926
24 O -0.957 6.957
25 O -0.955 6.955
26 C 0.001 3.999
27 C -0.192 4.192
28 H 0.045 0.955
29 H 0.051 0.949
30 H 0.102 0.898
31 H 0.074 0.926
32 H 0.095 0.905
33 H 0.108 0.892
34 H 0.103 0.897
35 H 0.099 0.901
36 H 0.158 0.842
37 H 0.162 0.838
38 H 0.243 0.757
39 H 0.249 0.751
40 H 0.167 0.833
41 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges 0.965 3.748 -26.985 27.261
hybrid contribution 0.840 -1.399 0.868 1.848
sum 1.806 2.349 -26.117 26.285
Atomic orbital electron populations
1.21669 0.95868 0.99587 1.01511 1.18775 0.94534 0.97438 0.85489
0.91291 1.21102 1.34801 1.10640 0.88752 0.90618 1.24946 0.95011
0.94814 0.99156 1.69950 1.42739 1.16035 1.24071 0.86392 0.78839
0.79836 0.81913 1.20542 1.19630 1.21139 1.25387 0.76546 0.83106
0.83781 1.90503 1.36381 1.26787 1.86711 1.86694 1.70266 1.55673
1.15296 1.22841 1.00274 0.95074 0.83087 1.23105 0.99496 0.81467
0.97542 1.86266 1.67011 1.28496 1.38784 1.19440 0.89819 0.90919
0.84828 1.21425 1.04485 1.02626 0.96849 1.20726 0.92271 0.90648
0.95977 1.30284 1.17412 1.11098 1.22225 1.01314 0.72806 0.73430
0.72824 1.53102 1.47502 1.61653 1.30374 1.93599 1.41785 1.80470
1.79813 1.93603 1.85551 1.33058 1.83300 1.20771 0.90362 0.98353
0.90452 1.20654 1.05215 0.92792 1.00507 0.95457 0.94866 0.89768
0.92646 0.90503 0.89237 0.89659 0.90130 0.84197 0.83771 0.75660
0.75110 0.83316 0.83695
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 42.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.95 8.96 37.16 0.33 -2.62 16
2 C 0.06 1.42 2.63 -92.92 -0.24 1.17 16
3 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16
4 C -0.52 -14.29 8.32 -34.44 -0.29 -14.58 16
5 H 0.08 2.19 6.77 -52.49 -0.36 1.83 16
6 C 0.06 1.71 5.21 -17.82 -0.09 1.62 16
7 N -0.89 -24.77 11.92 55.43 0.66 -24.11 16
8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16
9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
10 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16
11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
12 C 0.47 10.65 7.25 36.00 0.26 10.91 16
13 O -0.52 -12.73 15.21 -18.75 -0.29 -13.01 16
14 O -0.36 -6.84 10.12 -42.03 -0.43 -7.26 16
15 C 0.06 0.86 5.84 37.16 0.22 1.07 16
16 C 0.06 0.60 5.13 37.16 0.19 0.79 16
17 O -0.29 -3.66 10.11 -22.98 -0.23 -3.89 16
18 C 0.20 2.12 6.69 -39.22 -0.26 1.86 16
19 C -0.23 -2.06 9.04 -39.43 -0.36 -2.41 16
20 C 0.02 0.19 9.52 -39.60 -0.38 -0.19 16
21 C -0.72 -5.93 5.94 -39.56 -0.24 -6.16 16
22 S 2.71 20.92 6.28 -107.50 -0.68 20.25 16
23 N -1.25 -4.54 9.55 60.35 0.58 -3.97 16
24 O -0.97 -10.51 17.28 -57.17 -0.99 -11.50 16
25 O -0.97 -10.64 17.28 -57.17 -0.99 -11.63 16
26 C 0.02 0.17 9.52 -39.60 -0.38 -0.21 16
27 C -0.17 -1.70 9.99 -39.43 -0.39 -2.10 16
28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16
30 H 0.08 2.09 6.59 -51.93 -0.34 1.75 16
31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16
32 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16
33 H 0.09 1.12 8.13 -51.93 -0.42 0.69 16
34 H 0.09 0.57 7.65 -51.93 -0.40 0.18 16
35 H 0.08 0.76 7.67 -51.93 -0.40 0.36 16
36 H 0.14 0.92 6.30 -52.49 -0.33 0.59 16
37 H 0.14 0.91 7.61 -52.49 -0.40 0.51 16
38 H 0.42 0.60 8.92 -34.46 -0.31 0.29 16
39 H 0.42 0.89 8.96 -34.46 -0.31 0.58 16
40 H 0.15 1.01 7.61 -52.49 -0.40 0.61 16
41 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16
LS Contribution 367.78 15.07 5.54 5.54
Total: -1.00 -36.73 367.78 -8.37 -45.10
By element:
Atomic # 1 Polarization: 3.96 SS G_CDS: -4.91 Total: -0.95 kcal
Atomic # 6 Polarization: -9.20 SS G_CDS: -1.62 Total: -10.83 kcal
Atomic # 7 Polarization: -29.31 SS G_CDS: 1.24 Total: -28.08 kcal
Atomic # 8 Polarization: -44.37 SS G_CDS: -2.92 Total: -47.29 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal
Atomic # 16 Polarization: 20.92 SS G_CDS: -0.68 Total: 20.25 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -36.73 -8.37 -45.10 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001327136952.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -133.747 kcal
(2) G-P(sol) polarization free energy of solvation -36.728 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.475 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.098 kcal
(6) G-S(sol) free energy of system = (1) + (5) -178.844 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.45 seconds