Wall clock time and date at job start Sat Apr 11 2020 06:48:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08998 * 109.46758 * 2 1
4 4 C 1.50700 * 109.47194 * 119.99798 * 2 1 3
5 5 H 1.07999 * 119.99256 * 116.69007 * 4 2 1
6 6 C 1.37868 * 120.00303 * 296.69370 * 4 2 1
7 7 N 1.31520 * 120.00090 * 352.44338 * 6 4 2
8 8 Si 1.86805 * 120.00195 * 172.71443 * 6 4 2
9 9 H 1.48503 * 109.47054 * 264.79579 * 8 6 4
10 10 H 1.48500 * 109.46575 * 24.79344 * 8 6 4
11 11 H 1.48491 * 109.47049 * 144.79629 * 8 6 4
12 12 C 1.50697 * 109.47254 * 240.00375 * 2 1 3
13 13 O 1.20825 * 119.99929 * 239.99773 * 12 2 1
14 14 O 1.34231 * 120.00011 * 59.99808 * 12 2 1
15 15 C 1.45204 * 116.99927 * 180.02562 * 14 12 2
16 16 C 1.52998 * 109.47298 * 179.97438 * 15 14 12
17 17 O 1.42904 * 109.46967 * 64.99740 * 16 15 14
18 18 C 1.35897 * 116.99742 * 180.02562 * 17 16 15
19 19 C 1.38734 * 120.05632 * 359.72585 * 18 17 16
20 20 C 1.38145 * 119.94108 * 179.74589 * 19 18 17
21 21 C 1.38271 * 120.05903 * 0.50740 * 20 19 18
22 22 S 1.76197 * 119.94729 * 179.74258 * 21 20 19
23 23 N 1.65595 * 107.22025 * 270.02401 * 22 21 20
24 24 O 1.42105 * 106.39971 * 23.56534 * 22 21 20
25 25 O 1.42100 * 106.39880 * 156.47935 * 22 21 20
26 26 C 1.38272 * 120.10774 * 359.76870 * 21 20 19
27 27 C 1.38143 * 120.05268 * 359.97438 * 26 21 20
28 28 H 1.09001 * 109.47192 * 57.78356 * 1 2 3
29 29 H 1.08997 * 109.46811 * 177.78416 * 1 2 3
30 30 H 1.09003 * 109.47025 * 297.77973 * 1 2 3
31 31 H 0.96998 * 120.00239 * 180.27341 * 7 6 4
32 32 H 1.09004 * 109.46741 * 299.99980 * 15 14 12
33 33 H 1.08998 * 109.46870 * 59.99730 * 15 14 12
34 34 H 1.08999 * 109.47281 * 184.99876 * 16 15 14
35 35 H 1.09005 * 109.46899 * 305.00345 * 16 15 14
36 36 H 1.07995 * 120.03042 * 359.97438 * 19 18 17
37 37 H 1.07999 * 119.97278 * 180.23245 * 20 19 18
38 38 H 0.96999 * 119.99862 * 359.97438 * 23 22 21
39 39 H 0.97002 * 119.99655 * 180.02562 * 23 22 21
40 40 H 1.07998 * 119.96972 * 180.02562 * 26 21 20
41 41 H 1.08011 * 120.02364 * 179.97438 * 27 26 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2305
5 1 2.6085 -1.6186 1.1322
6 6 1.7566 -0.2009 2.4815
7 7 1.1861 0.9781 2.6003
8 14 2.1999 -1.1820 4.0082
9 1 1.0172 -1.9593 4.4579
10 1 3.3131 -2.1127 3.6923
11 1 2.6219 -0.2538 5.0877
12 6 2.0324 -0.7103 -1.2305
13 8 2.7271 -1.6927 -1.1196
14 8 1.7081 -0.2517 -2.4496
15 6 2.2269 -0.9861 -3.5897
16 6 1.7549 -0.3196 -4.8835
17 8 2.3270 0.9861 -4.9828
18 6 2.0060 1.7184 -6.0816
19 6 1.1623 1.1889 -7.0473
20 6 0.8334 1.9374 -8.1608
21 6 1.3525 3.2092 -8.3186
22 16 0.9364 4.1586 -9.7433
23 7 2.0657 3.8189 -10.9059
24 8 -0.2990 3.6443 -10.2215
25 8 1.1250 5.5211 -9.3866
26 6 2.1982 3.7369 -7.3603
27 6 2.5260 2.9945 -6.2424
28 1 -0.3633 0.5479 -0.8694
29 1 -0.3633 -1.0269 -0.0397
30 1 -0.3633 0.4790 0.9092
31 1 0.9956 1.3383 3.4806
32 1 3.3164 -0.9858 -3.5569
33 1 1.8627 -2.0129 -3.5566
34 1 2.0693 -0.9199 -5.7372
35 1 0.6678 -0.2402 -4.8756
36 1 0.7601 0.1939 -6.9268
37 1 0.1736 1.5272 -8.9111
38 1 2.7819 3.1923 -10.7178
39 1 2.0113 4.2470 -11.7746
40 1 2.6021 4.7307 -7.4856
41 1 3.1869 3.4070 -5.4944
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001327136952.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:24
Heat of formation + Delta-G solvation = -206.338092 kcal
Electronic energy + Delta-G solvation = -26536.472057 eV
Core-core repulsion = 22314.785754 eV
Total energy + Delta-G solvation = -4221.686303 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.101 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.55559 -41.13965 -38.77577 -38.19759 -37.43297 -36.88470 -35.90742 -33.99776
-33.01059 -32.44755 -31.94154 -30.66373 -27.27230 -25.81502 -24.57342 -24.10089
-22.86586 -21.67796 -20.52143 -19.69762 -19.09441 -18.70918 -18.29292 -18.12353
-17.76969 -17.28940 -17.14184 -16.81972 -16.72459 -16.34707 -16.05761 -15.70404
-15.05139 -14.79236 -14.65108 -14.34582 -14.22500 -14.15576 -13.74703 -13.51030
-13.18669 -13.16554 -13.09580 -13.01921 -12.91762 -12.77923 -12.60336 -12.35356
-12.28193 -12.10229 -12.06366 -11.94423 -11.62554 -11.30349 -11.15576 -11.00409
-10.56127 -10.22485 -9.73141 -8.24283 -6.34296 -0.57418 -0.21776 0.17938
1.40046 1.41949 1.42839 1.53446 1.85418 1.92058 2.16876 2.39356
2.42812 2.78852 3.08160 3.42126 3.59167 3.69634 3.87640 3.92029
4.02441 4.11435 4.22611 4.28641 4.42760 4.50517 4.55869 4.65974
4.81091 4.85327 4.86907 4.95728 4.98636 5.12087 5.32036 5.34726
5.43040 5.53340 5.65948 5.79507 6.05535 6.18230 6.38452 6.72621
7.02002 7.33881 8.85023
Molecular weight = 343.10amu
Principal moments of inertia in cm(-1)
A = 0.027440 B = 0.001795 C = 0.001746
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1020.150942 B =15596.789967 C =16035.413236
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C 0.047 3.953
3 H 0.048 0.952
4 C -0.538 4.538
5 H 0.058 0.942
6 C 0.021 3.979
7 N -0.911 5.911
8 Si 0.963 3.037
9 H -0.270 1.270
10 H -0.275 1.275
11 H -0.277 1.277
12 C 0.476 3.524
13 O -0.541 6.541
14 O -0.361 6.361
15 C 0.052 3.948
16 C 0.061 3.939
17 O -0.323 6.323
18 C 0.178 3.822
19 C -0.233 4.233
20 C 0.019 3.981
21 C -0.718 4.718
22 S 2.733 3.267
23 N -1.235 6.235
24 O -0.998 6.998
25 O -1.000 7.000
26 C 0.017 3.983
27 C -0.189 4.189
28 H 0.050 0.950
29 H 0.037 0.963
30 H 0.063 0.937
31 H 0.268 0.732
32 H 0.071 0.929
33 H 0.107 0.893
34 H 0.129 0.871
35 H 0.092 0.908
36 H 0.164 0.836
37 H 0.165 0.835
38 H 0.429 0.571
39 H 0.429 0.571
40 H 0.163 0.837
41 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.262 2.472 -28.994 29.127
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.028 3.972
3 H 0.066 0.934
4 C -0.576 4.576
5 H 0.076 0.924
6 C -0.179 4.179
7 N -0.549 5.549
8 Si 0.788 3.212
9 H -0.195 1.195
10 H -0.200 1.200
11 H -0.202 1.202
12 C 0.321 3.679
13 O -0.431 6.431
14 O -0.279 6.279
15 C -0.022 4.022
16 C -0.013 4.013
17 O -0.235 6.235
18 C 0.131 3.869
19 C -0.252 4.252
20 C 0.000 4.000
21 C -0.807 4.807
22 S 2.822 3.178
23 N -0.915 5.915
24 O -0.987 6.987
25 O -0.989 6.989
26 C -0.003 4.003
27 C -0.208 4.208
28 H 0.069 0.931
29 H 0.056 0.944
30 H 0.082 0.918
31 H 0.077 0.923
32 H 0.090 0.910
33 H 0.125 0.875
34 H 0.146 0.854
35 H 0.110 0.890
36 H 0.182 0.818
37 H 0.182 0.818
38 H 0.259 0.741
39 H 0.262 0.738
40 H 0.180 0.820
41 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges 0.672 2.970 -28.647 28.808
hybrid contribution 0.971 -1.108 1.214 1.909
sum 1.642 1.861 -27.432 27.545
Atomic orbital electron populations
1.21492 0.94333 0.99965 1.01504 1.18677 0.95858 0.96239 0.86437
0.93403 1.21236 1.35419 1.10479 0.90441 0.92393 1.25671 0.94822
0.95661 1.01720 1.70031 1.43036 1.16919 1.24918 0.85465 0.78658
0.78542 0.78543 1.19496 1.19983 1.20226 1.24727 0.76034 0.82397
0.84722 1.90480 1.37398 1.27769 1.87420 1.86619 1.69946 1.56067
1.15254 1.23319 1.00208 0.96164 0.82459 1.23238 1.00064 0.81367
0.96610 1.86208 1.67874 1.29470 1.39981 1.19630 0.91044 0.91191
0.85075 1.21683 1.03651 1.03665 0.96184 1.21042 0.92212 0.90497
0.96288 1.30327 1.17012 1.11227 1.22165 1.00316 0.72476 0.72345
0.72629 1.52674 1.46990 1.61890 1.29913 1.93564 1.44040 1.80757
1.80324 1.93566 1.86094 1.35287 1.83989 1.20959 0.90361 0.98863
0.90078 1.20821 1.05734 0.93157 1.01104 0.93061 0.94385 0.91834
0.92280 0.91037 0.87542 0.85381 0.88991 0.81831 0.81772 0.74051
0.73837 0.81979 0.83831
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.29 8.96 71.98 0.65 -4.64 16
2 C 0.05 2.40 2.63 -12.29 -0.03 2.37 16
3 H 0.05 2.62 8.14 -2.39 -0.02 2.60 16
4 C -0.54 -30.41 8.32 25.60 0.21 -30.20 16
5 H 0.06 3.42 6.77 -2.91 -0.02 3.40 16
6 C 0.02 1.18 5.21 84.65 0.44 1.62 16
7 N -0.91 -51.09 11.92 21.44 0.26 -50.83 16
8 Si 0.96 43.69 29.54 68.60 2.03 45.71 16
9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16
11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16
12 C 0.48 21.87 7.25 71.23 0.52 22.39 16
13 O -0.54 -26.92 15.21 21.97 0.33 -26.59 16
14 O -0.36 -13.49 10.12 -48.79 -0.49 -13.99 16
15 C 0.05 1.37 5.84 71.98 0.42 1.79 16
16 C 0.06 1.10 5.13 71.98 0.37 1.47 16
17 O -0.32 -7.65 10.11 -88.98 -0.90 -8.55 16
18 C 0.18 3.58 6.69 22.51 0.15 3.73 16
19 C -0.23 -3.51 9.04 22.37 0.20 -3.31 16
20 C 0.02 0.26 9.52 22.26 0.21 0.47 16
21 C -0.72 -10.66 5.94 22.29 0.13 -10.53 16
22 S 2.73 38.48 6.28 -56.49 -0.35 38.12 16
23 N -1.23 -6.40 9.55 37.02 0.35 -6.04 16
24 O -1.00 -20.31 17.28 -128.00 -2.21 -22.52 16
25 O -1.00 -21.22 17.28 -128.00 -2.21 -23.43 16
26 C 0.02 0.27 9.52 22.26 0.21 0.48 16
27 C -0.19 -3.65 9.99 22.36 0.22 -3.42 16
28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16
29 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
30 H 0.06 3.17 6.59 -2.39 -0.02 3.16 16
31 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16
32 H 0.07 1.96 8.13 -2.38 -0.02 1.95 16
33 H 0.11 2.45 8.13 -2.39 -0.02 2.43 16
34 H 0.13 1.23 7.65 -2.39 -0.02 1.21 16
35 H 0.09 1.46 7.67 -2.38 -0.02 1.44 16
36 H 0.16 1.56 6.30 -2.91 -0.02 1.54 16
37 H 0.16 1.60 7.61 -2.91 -0.02 1.57 16
38 H 0.43 0.18 8.92 -96.75 -0.86 -0.69 16
39 H 0.43 0.90 8.96 -96.75 -0.87 0.04 16
40 H 0.16 2.06 7.61 -2.91 -0.02 2.04 16
41 H 0.14 2.66 8.06 -2.90 -0.02 2.64 16
Total: -1.00 -79.65 367.78 -0.13 -79.78
By element:
Atomic # 1 Polarization: 6.75 SS G_CDS: -0.63 Total: 6.11 kcal
Atomic # 6 Polarization: -21.48 SS G_CDS: 3.70 Total: -17.77 kcal
Atomic # 7 Polarization: -57.49 SS G_CDS: 0.61 Total: -56.88 kcal
Atomic # 8 Polarization: -89.59 SS G_CDS: -5.48 Total: -95.08 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal
Atomic # 16 Polarization: 38.48 SS G_CDS: -0.35 Total: 38.12 kcal
Total: -79.65 -0.13 -79.78 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001327136952.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -126.560 kcal
(2) G-P(sol) polarization free energy of solvation -79.647 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.207 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.778 kcal
(6) G-S(sol) free energy of system = (1) + (5) -206.338 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds