Wall clock time and date at job start Sat Apr 11 2020 06:48:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86801 * 120.00173 * 2 1
4 4 H 1.48500 * 109.47132 * 270.00081 * 3 2 1
5 5 H 1.48494 * 109.47161 * 29.99693 * 3 2 1
6 6 H 1.48501 * 109.47245 * 149.99915 * 3 2 1
7 7 C 1.37877 * 119.99887 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00034 * 179.97438 * 7 2 1
9 9 C 1.50697 * 119.99842 * 359.97438 * 7 2 1
10 10 C 1.53008 * 109.47097 * 180.02562 * 9 7 2
11 11 C 1.50697 * 109.47097 * 179.97438 * 10 9 7
12 12 O 1.21278 * 120.00176 * 359.97438 * 11 10 9
13 13 N 1.34774 * 119.99727 * 180.02562 * 11 10 9
14 14 S 1.65604 * 119.99659 * 180.02562 * 13 11 10
15 15 O 1.42097 * 106.40425 * 311.45383 * 14 13 11
16 16 O 1.42103 * 106.39726 * 178.53921 * 14 13 11
17 17 C 1.76197 * 107.22033 * 65.00063 * 14 13 11
18 18 C 1.39867 * 126.03987 * 89.97268 * 17 14 13
19 19 N 1.30837 * 108.20326 * 180.02562 * 18 17 14
20 20 N 1.40090 * 108.20632 * 0.02562 * 19 18 17
21 21 C 1.46498 * 126.04334 * 180.02562 * 20 19 18
22 22 H 1.08999 * 110.79708 * 331.39514 * 21 20 19
23 23 C 1.54807 * 110.90714 * 95.01822 * 21 20 19
24 24 C 1.54105 * 104.18504 * 139.11902 * 23 21 20
25 25 O 1.43746 * 107.42259 * 1.95340 * 24 23 21
26 26 C 1.44586 * 106.86832 * 333.67423 * 25 24 23
27 27 C 1.34951 * 107.92273 * 0.26046 * 20 19 18
28 28 H 0.96999 * 119.99712 * 0.02562 * 1 2 3
29 29 H 1.08993 * 109.47108 * 60.00337 * 9 7 2
30 30 H 1.08995 * 109.47422 * 299.99764 * 9 7 2
31 31 H 1.09003 * 109.46912 * 59.99989 * 10 9 7
32 32 H 1.08995 * 109.46700 * 300.00094 * 10 9 7
33 33 H 0.96997 * 120.00474 * 359.97438 * 13 11 10
34 34 H 1.07999 * 125.90232 * 359.97438 * 18 17 14
35 35 H 1.08996 * 110.48875 * 20.44171 * 23 21 20
36 36 H 1.09003 * 110.60294 * 257.84663 * 23 21 20
37 37 H 1.09002 * 109.88076 * 121.45430 * 24 23 21
38 38 H 1.08996 * 109.87584 * 242.45546 * 24 23 21
39 39 H 1.08999 * 110.50225 * 281.37988 * 26 25 24
40 40 H 1.08994 * 110.77338 * 158.50734 * 26 25 24
41 41 H 1.07993 * 126.12897 * 179.73512 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6527 0.6999
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4991 -0.0005
10 6 2.2452 -3.6621 -0.0005
11 6 1.4916 -4.9672 0.0001
12 8 0.2789 -4.9672 0.0010
13 7 2.1655 -6.1344 0.0007
14 16 1.3374 -7.5685 0.0008
15 8 0.3548 -7.4645 1.0220
16 8 2.3170 -8.5973 -0.0332
17 6 0.4613 -7.6650 -1.5249
18 6 0.9402 -8.2223 -2.7150
19 7 0.0064 -8.1085 -3.6244
20 7 -1.0977 -7.4737 -3.0409
21 6 -2.3602 -7.1517 -3.7107
22 1 -2.2025 -6.9909 -4.7772
23 6 -3.4125 -8.2611 -3.4690
24 6 -4.7250 -7.4904 -3.2274
25 8 -4.4348 -6.0900 -3.3722
26 6 -3.0339 -5.9173 -3.0589
27 6 -0.7911 -7.2065 -1.7542
28 1 -0.4850 0.8401 -0.0004
29 1 0.6240 -2.5566 -0.8903
30 1 0.6247 -2.5571 0.8896
31 1 2.8718 -3.6044 0.8895
32 1 2.8718 -3.6043 -0.8905
33 1 3.1355 -6.1344 0.0004
34 1 1.9130 -8.6686 -2.8588
35 1 -3.1497 -8.8515 -2.5913
36 1 -3.5024 -8.9021 -4.3460
37 1 -5.4723 -7.7919 -3.9614
38 1 -5.0924 -7.6906 -2.2210
39 1 -2.8807 -5.9216 -1.9798
40 1 -2.6508 -4.9953 -3.4962
41 1 -1.4315 -6.7173 -1.0353
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001325012354.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:45
Heat of formation + Delta-G solvation = -80.150229 kcal
Electronic energy + Delta-G solvation = -28112.021752 eV
Core-core repulsion = 23928.100117 eV
Total energy + Delta-G solvation = -4183.921635 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.108 amu
Computer time = 6.21 seconds
Orbital eigenvalues (eV)
-41.77186 -39.69510 -39.57209 -37.17158 -35.88831 -34.22370 -34.19225 -33.62756
-31.11336 -31.06734 -30.57815 -28.81549 -26.05734 -24.18364 -22.77488 -22.61282
-22.00191 -20.69589 -20.34387 -19.59722 -18.60462 -17.69993 -17.19806 -17.05332
-16.54723 -16.00726 -15.66556 -15.32941 -15.23449 -15.16975 -14.91667 -14.53982
-14.49125 -13.91116 -13.88080 -13.32375 -12.89349 -12.74572 -12.70285 -12.23081
-12.20816 -12.14166 -12.05155 -12.03445 -11.97993 -11.37323 -11.32851 -11.01341
-10.92673 -10.68060 -10.60142 -10.20502 -10.10954 -10.02007 -9.86751 -9.61016
-9.40957 -9.19487 -8.41256 -6.05282 -4.10048 0.27819 1.30825 1.88820
2.03884 2.48876 2.97116 3.28310 3.35356 3.37399 3.39353 3.69384
3.89091 3.91277 4.11864 4.31014 4.39258 4.44240 4.55923 4.58805
4.71133 4.90636 5.06509 5.19681 5.23799 5.24111 5.29872 5.30546
5.33018 5.37409 5.41888 6.00221 6.01855 6.08812 6.22478 6.48733
6.58750 6.91370 7.14257 7.61627 7.69988 7.86815 7.94133 8.29981
8.97084 9.54418 11.05524
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.009563 B = 0.003601 C = 0.002817
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2927.109478 B = 7773.620791 C = 9935.752905
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.889 5.889
2 C 0.060 3.940
3 Si 0.893 3.107
4 H -0.281 1.281
5 H -0.286 1.286
6 H -0.273 1.273
7 C -0.530 4.530
8 H 0.057 0.943
9 C 0.034 3.966
10 C -0.132 4.132
11 C 0.533 3.467
12 O -0.492 6.492
13 N -1.059 6.059
14 S 2.711 3.289
15 O -0.938 6.938
16 O -0.956 6.956
17 C -0.813 4.813
18 C 0.134 3.866
19 N -0.290 5.290
20 N -0.353 5.353
21 C 0.121 3.879
22 H 0.126 0.874
23 C -0.168 4.168
24 C 0.045 3.955
25 O -0.361 6.361
26 C 0.037 3.963
27 C 0.203 3.797
28 H 0.262 0.738
29 H 0.025 0.975
30 H 0.028 0.972
31 H 0.092 0.908
32 H 0.091 0.909
33 H 0.432 0.568
34 H 0.200 0.800
35 H 0.086 0.914
36 H 0.093 0.907
37 H 0.093 0.907
38 H 0.069 0.931
39 H 0.080 0.920
40 H 0.116 0.884
41 H 0.198 0.802
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.074 -18.187 -6.839 19.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.527 5.527
2 C -0.142 4.142
3 Si 0.721 3.279
4 H -0.207 1.207
5 H -0.212 1.212
6 H -0.198 1.198
7 C -0.568 4.568
8 H 0.076 0.924
9 C -0.004 4.004
10 C -0.174 4.174
11 C 0.322 3.678
12 O -0.362 6.362
13 N -0.825 5.825
14 S 2.801 3.199
15 O -0.928 6.928
16 O -0.946 6.946
17 C -0.913 4.913
18 C -0.057 4.057
19 N -0.107 5.107
20 N -0.131 5.131
21 C 0.018 3.982
22 H 0.144 0.856
23 C -0.206 4.206
24 C -0.032 4.032
25 O -0.278 6.278
26 C -0.041 4.041
27 C 0.049 3.951
28 H 0.071 0.929
29 H 0.043 0.957
30 H 0.046 0.954
31 H 0.110 0.890
32 H 0.109 0.891
33 H 0.268 0.732
34 H 0.217 0.783
35 H 0.105 0.895
36 H 0.112 0.888
37 H 0.111 0.889
38 H 0.087 0.913
39 H 0.098 0.902
40 H 0.134 0.866
41 H 0.215 0.785
Dipole moment (debyes) X Y Z Total
from point charges -3.822 -18.694 -7.588 20.534
hybrid contribution 1.207 1.082 0.166 1.629
sum -2.615 -17.612 -7.422 19.290
Atomic orbital electron populations
1.69979 1.06063 1.26756 1.49902 1.25007 0.94833 0.99278 0.95123
0.86580 0.79813 0.83406 0.78087 1.20680 1.21187 1.19819 1.21170
0.93004 0.90807 1.51825 0.92444 1.18977 0.93176 0.89376 0.98880
1.22061 1.01052 0.90683 1.03611 1.21646 0.88508 0.85963 0.71693
1.90766 1.13669 1.86960 1.44840 1.55201 1.21625 1.23810 1.81835
1.01434 0.73264 0.72014 0.73170 1.93620 1.60398 1.85277 1.53523
1.93593 1.60203 1.53498 1.87323 1.31308 1.09630 1.27314 1.23052
1.23574 0.98835 0.95000 0.88241 1.77417 0.94263 1.17424 1.21608
1.49047 1.12562 1.43626 1.07832 1.23082 0.79582 0.95983 0.99553
0.85587 1.23410 0.94355 0.98352 1.04533 1.23205 0.96446 0.81031
1.02480 1.89050 1.24229 1.24154 1.90378 1.24023 0.81396 0.97592
1.01059 1.22612 0.94774 0.90789 0.86884 0.92853 0.95706 0.95380
0.88960 0.89099 0.73174 0.78298 0.89521 0.88809 0.88887 0.91324
0.90193 0.86568 0.78539
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16
2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16
3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16
4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
7 C -0.53 -14.11 9.11 -34.44 -0.31 -14.43 16
8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16
9 C 0.03 0.83 4.26 -27.88 -0.12 0.71 16
10 C -0.13 -2.34 5.64 -27.88 -0.16 -2.50 16
11 C 0.53 8.79 7.66 -10.99 -0.08 8.70 16
12 O -0.49 -9.59 13.94 -11.52 -0.16 -9.75 16
13 N -1.06 -13.04 5.70 31.22 0.18 -12.86 16
14 S 2.71 36.54 5.53 -107.50 -0.59 35.95 16
15 O -0.94 -15.93 16.80 -64.61 -1.09 -17.01 16
16 O -0.96 -13.30 17.87 -57.17 -1.02 -14.32 16
17 C -0.81 -10.59 5.86 -40.01 -0.23 -10.82 16
18 C 0.13 1.59 11.82 -17.37 -0.21 1.38 16
19 N -0.29 -3.72 12.58 30.62 0.39 -3.34 16
20 N -0.35 -4.25 3.61 -52.92 -0.19 -4.44 16
21 C 0.12 1.15 4.28 -65.93 -0.28 0.87 16
22 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16
23 C -0.17 -1.27 6.76 -25.20 -0.17 -1.44 16
24 C 0.05 0.35 7.69 37.73 0.29 0.64 16
25 O -0.36 -3.88 11.54 -35.23 -0.41 -4.29 16
26 C 0.04 0.38 7.06 38.21 0.27 0.65 16
27 C 0.20 2.64 9.53 -17.22 -0.16 2.48 16
28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16
29 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16
30 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16
31 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16
32 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16
33 H 0.43 3.58 8.83 -34.47 -0.30 3.28 16
34 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16
35 H 0.09 0.69 8.05 -51.93 -0.42 0.27 16
36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16
37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16
38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
39 H 0.08 0.85 6.26 -51.93 -0.33 0.52 16
40 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16
41 H 0.20 2.47 6.60 -52.49 -0.35 2.12 16
LS Contribution 363.88 15.07 5.48 5.48
Total: -1.00 -36.52 363.88 -8.12 -44.64
By element:
Atomic # 1 Polarization: 6.85 SS G_CDS: -5.16 Total: 1.69 kcal
Atomic # 6 Polarization: -10.93 SS G_CDS: -1.27 Total: -12.19 kcal
Atomic # 7 Polarization: -47.13 SS G_CDS: 1.11 Total: -46.02 kcal
Atomic # 8 Polarization: -42.70 SS G_CDS: -2.67 Total: -45.38 kcal
Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal
Atomic # 16 Polarization: 36.54 SS G_CDS: -0.59 Total: 35.95 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -36.52 -8.12 -44.64 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001325012354.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.506 kcal
(2) G-P(sol) polarization free energy of solvation -36.521 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.027 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.644 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.150 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 6.21 seconds