Wall clock time and date at job start Sat Apr 11 2020 06:52:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.42898 * 114.00453 * 2 1
4 4 C 1.50704 * 112.49435 * 294.77024 * 3 2 1
5 5 O 1.21297 * 119.99596 * 141.01646 * 4 3 2
6 6 N 1.34777 * 120.00202 * 321.02371 * 4 3 2
7 7 C 1.39466 * 120.00082 * 174.77935 * 6 4 3
8 8 C 1.36123 * 126.21568 * 0.02562 * 7 6 4
9 9 C 1.39754 * 107.82466 * 179.97438 * 8 7 6
10 10 C 1.50701 * 125.83670 * 180.02562 * 9 8 7
11 11 N 1.30846 * 108.32674 * 0.02562 * 9 8 7
12 12 N 1.35253 * 126.21956 * 179.71281 * 7 6 4
13 13 C 1.46497 * 126.04475 * 0.03135 * 12 7 6
14 14 C 1.50704 * 109.47454 * 90.00333 * 13 12 7
15 15 H 1.07996 * 119.99692 * 359.97438 * 14 13 12
16 16 C 1.37870 * 120.00060 * 180.02562 * 14 13 12
17 17 N 1.31517 * 120.00495 * 359.97438 * 16 14 13
18 18 Si 1.86805 * 119.99746 * 179.97438 * 16 14 13
19 19 H 1.48496 * 109.47392 * 359.97438 * 18 16 14
20 20 H 1.48507 * 109.47132 * 119.99941 * 18 16 14
21 21 H 1.48506 * 109.47218 * 239.99629 * 18 16 14
22 22 C 1.53042 * 113.15155 * 164.98670 * 3 2 1
23 23 S 1.81502 * 89.86245 * 211.86559 * 22 3 2
24 24 O 1.42096 * 112.72031 * 280.43142 * 23 22 3
25 25 O 1.42096 * 112.77710 * 136.69573 * 23 22 3
26 26 C 1.53039 * 113.15426 * 64.55721 * 3 2 1
27 27 H 1.09004 * 109.46708 * 295.68947 * 1 2 3
28 28 H 1.08995 * 109.47282 * 175.68432 * 1 2 3
29 29 H 1.09000 * 109.46805 * 55.68646 * 1 2 3
30 30 H 0.96998 * 119.99687 * 354.77642 * 6 4 3
31 31 H 1.07994 * 126.08047 * 359.94766 * 8 7 6
32 32 H 1.09005 * 109.47104 * 89.99733 * 10 9 8
33 33 H 1.08989 * 109.47484 * 210.00226 * 10 9 8
34 34 H 1.09008 * 109.46749 * 330.00495 * 10 9 8
35 35 H 1.09003 * 109.47388 * 210.00474 * 13 12 7
36 36 H 1.09001 * 109.47113 * 329.99766 * 13 12 7
37 37 H 0.97001 * 120.00266 * 180.02562 * 17 16 14
38 38 H 1.08998 * 113.15386 * 327.10961 * 22 3 2
39 39 H 1.09007 * 113.14858 * 96.59555 * 22 3 2
40 40 H 1.08997 * 113.15128 * 263.40970 * 26 3 2
41 41 H 1.09002 * 113.14934 * 32.88600 * 26 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 1.7119 2.0694 -1.2643
5 8 1.4702 3.2569 -1.2124
6 7 1.7135 1.4333 -2.4524
7 6 1.3316 2.1138 -3.6083
8 6 0.9366 3.4143 -3.6825
9 6 0.6441 3.6970 -5.0196
10 6 0.1699 5.0223 -5.5579
11 7 0.8525 2.6143 -5.7241
12 7 1.2919 1.6031 -4.8602
13 6 1.6427 0.2335 -5.2439
14 6 0.4164 -0.6391 -5.1686
15 1 -0.5296 -0.2159 -4.8648
16 6 0.5023 -1.9779 -5.4866
17 7 1.6544 -2.4934 -5.8560
18 14 -1.0177 -3.0596 -5.3925
19 1 -2.1789 -2.2447 -4.9535
20 1 -1.2967 -3.6389 -6.7312
21 1 -0.7859 -4.1556 -4.4175
22 6 3.4967 1.3022 0.3645
23 16 3.3075 2.9360 1.1320
24 8 3.2974 3.9914 0.1806
25 8 3.9825 3.0399 2.3781
26 6 1.7029 2.1010 1.2706
27 1 -0.3633 0.4455 0.9261
28 1 -0.3633 -1.0247 -0.0773
29 1 -0.3633 0.5793 -0.8488
30 1 1.9804 0.5021 -2.5036
31 1 0.8621 4.1046 -2.8553
32 1 1.0305 5.6287 -5.8403
33 1 -0.4594 4.8552 -6.4320
34 1 -0.4044 5.5415 -4.7906
35 1 2.0295 0.2295 -6.2630
36 1 2.4041 -0.1503 -4.5650
37 1 1.7148 -3.4353 -6.0801
38 1 3.7613 0.5217 1.0780
39 1 4.1516 1.3108 -0.5068
40 1 0.8563 2.7783 1.1579
41 1 1.6210 1.4748 2.1591
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001411270919.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:43
Heat of formation + Delta-G solvation = -25.381821 kcal
Electronic energy + Delta-G solvation = -29096.255929 eV
Core-core repulsion = 24914.709230 eV
Total energy + Delta-G solvation = -4181.546699 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.108 amu
Computer time = 1.93 seconds
Orbital eigenvalues (eV)
-41.31597 -40.16992 -37.98969 -37.47019 -36.30142 -35.12718 -34.42939 -33.80524
-32.11562 -29.26237 -28.45813 -27.59218 -26.55414 -26.09130 -24.65917 -22.86153
-21.04334 -19.83997 -19.71925 -18.83013 -18.07025 -17.11641 -17.03982 -16.76937
-16.44196 -16.08619 -15.81334 -15.32962 -15.27028 -14.83764 -14.68500 -14.27142
-14.09915 -13.96745 -13.33097 -13.20563 -12.87449 -12.81028 -12.55194 -12.45273
-12.40910 -12.20427 -12.08948 -11.83673 -11.68314 -11.58933 -11.30398 -11.10768
-10.95415 -10.72686 -10.62126 -10.48053 -10.38475 -9.86382 -9.83663 -9.57487
-8.76254 -7.98357 -7.52762 -6.37106 -4.45710 -0.22038 1.58840 1.91038
2.44852 2.93356 3.06514 3.11436 3.20505 3.24833 3.31349 3.49564
3.59645 3.70340 4.06838 4.18531 4.24482 4.27749 4.74099 4.91279
4.96510 5.12597 5.20473 5.28624 5.31465 5.32213 5.56759 5.60610
6.00967 6.08304 6.10252 6.17282 6.32551 6.50767 6.63045 6.79105
6.99113 7.39843 7.49508 7.55634 7.71586 7.76061 8.09570 8.56139
8.65463 9.21983 10.70232
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.011191 B = 0.004292 C = 0.003414
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2501.308260 B = 6522.940722 C = 8200.697796
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.337 6.337
3 C 0.126 3.874
4 C 0.494 3.506
5 O -0.471 6.471
6 N -0.622 5.622
7 C 0.296 3.704
8 C -0.290 4.290
9 C 0.051 3.949
10 C -0.062 4.062
11 N -0.281 5.281
12 N -0.341 5.341
13 C 0.255 3.745
14 C -0.540 4.540
15 H 0.065 0.935
16 C 0.068 3.932
17 N -0.889 5.889
18 Si 0.905 3.095
19 H -0.272 1.272
20 H -0.279 1.279
21 H -0.280 1.280
22 C -0.596 4.596
23 S 2.424 3.576
24 O -0.869 6.869
25 O -0.919 6.919
26 C -0.620 4.620
27 H 0.052 0.948
28 H 0.100 0.900
29 H 0.052 0.948
30 H 0.423 0.577
31 H 0.163 0.837
32 H 0.069 0.931
33 H 0.066 0.934
34 H 0.070 0.930
35 H 0.058 0.942
36 H 0.044 0.956
37 H 0.269 0.731
38 H 0.165 0.835
39 H 0.136 0.864
40 H 0.141 0.859
41 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.391 7.117 15.080 16.733
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.255 6.255
3 C 0.079 3.921
4 C 0.276 3.724
5 O -0.343 6.343
6 N -0.269 5.269
7 C 0.073 3.927
8 C -0.322 4.322
9 C -0.114 4.114
10 C -0.121 4.121
11 N -0.107 5.107
12 N -0.127 5.127
13 C 0.137 3.863
14 C -0.579 4.579
15 H 0.083 0.917
16 C -0.136 4.136
17 N -0.526 5.526
18 Si 0.732 3.268
19 H -0.196 1.196
20 H -0.205 1.205
21 H -0.206 1.206
22 C -0.722 4.722
23 S 2.600 3.400
24 O -0.867 6.867
25 O -0.916 6.916
26 C -0.748 4.748
27 H 0.070 0.930
28 H 0.119 0.881
29 H 0.071 0.929
30 H 0.260 0.740
31 H 0.181 0.819
32 H 0.087 0.913
33 H 0.085 0.915
34 H 0.089 0.911
35 H 0.076 0.924
36 H 0.062 0.938
37 H 0.078 0.922
38 H 0.183 0.817
39 H 0.155 0.845
40 H 0.160 0.840
41 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges 2.002 7.925 14.152 16.343
hybrid contribution -1.419 -2.153 0.381 2.607
sum 0.583 5.772 14.532 15.648
Atomic orbital electron populations
1.23010 0.79337 1.04275 1.01089 1.88052 1.21093 1.21859 1.94468
1.21383 0.93739 0.86288 0.90664 1.20366 0.79730 0.87909 0.84420
1.90822 1.44548 1.13257 1.85642 1.42510 1.64280 1.15951 1.04192
1.17890 1.01942 0.91726 0.81098 1.21294 1.18032 0.94818 0.98062
1.22036 1.01356 0.95447 0.92544 1.20026 1.00732 0.90583 1.00770
1.77376 1.21405 0.95836 1.16058 1.49376 1.49774 1.11876 1.01659
1.19660 0.96924 0.71221 0.98470 1.21345 0.95116 0.93425 1.47972
0.91683 1.24929 0.96756 0.97671 0.94267 1.69921 1.24226 1.14131
1.44327 0.86314 0.82363 0.79985 0.78105 1.19603 1.20505 1.20602
1.31299 0.98975 1.26817 1.15137 1.08022 0.79031 0.76880 0.76063
1.93862 1.83782 1.48505 1.60509 1.93667 1.70218 1.87022 1.40668
1.31497 1.26198 1.13075 1.04000 0.92982 0.88118 0.92946 0.73972
0.81941 0.91258 0.91483 0.91102 0.92434 0.93801 0.92177 0.81679
0.84538 0.84045 0.82177
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.21 10.61 101.05 1.07 1.28 16
2 O -0.34 -4.06 10.28 -35.23 -0.36 -4.42 16
3 C 0.13 1.42 1.12 -91.73 -0.10 1.32 16
4 C 0.49 7.49 5.57 -10.98 -0.06 7.43 16
5 O -0.47 -7.93 10.72 -17.51 -0.19 -8.11 16
6 N -0.62 -10.83 5.34 -11.46 -0.06 -10.89 16
7 C 0.30 6.14 7.66 -153.17 -1.17 4.97 16
8 C -0.29 -5.84 9.58 -39.78 -0.38 -6.23 16
9 C 0.05 1.01 7.21 -82.45 -0.59 0.42 16
10 C -0.06 -0.92 10.44 36.01 0.38 -0.54 16
11 N -0.28 -6.46 12.56 33.65 0.42 -6.04 16
12 N -0.34 -7.90 3.60 -61.57 -0.22 -8.12 16
13 C 0.25 6.30 6.01 -5.19 -0.03 6.27 16
14 C -0.54 -14.26 9.39 -34.44 -0.32 -14.59 16
15 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16
16 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16
17 N -0.89 -24.03 13.29 55.43 0.74 -23.29 16
18 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 16
19 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16
20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
22 C -0.60 -5.05 7.35 37.18 0.27 -4.77 16
23 S 2.42 22.14 7.41 -107.50 -0.80 21.35 16
24 O -0.87 -11.59 15.40 -66.65 -1.03 -12.62 16
25 O -0.92 -10.02 18.18 -57.30 -1.04 -11.07 16
26 C -0.62 -5.10 6.18 37.18 0.23 -4.87 16
27 H 0.05 0.45 7.63 -51.93 -0.40 0.05 16
28 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16
29 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16
30 H 0.42 7.11 7.74 -40.82 -0.32 6.79 16
31 H 0.16 3.15 5.85 -52.49 -0.31 2.84 16
32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
33 H 0.07 0.94 8.14 -51.94 -0.42 0.51 16
34 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16
35 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16
36 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16
37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16
38 H 0.17 0.99 8.14 -51.93 -0.42 0.57 16
39 H 0.14 1.07 8.11 -51.93 -0.42 0.65 16
40 H 0.14 1.11 7.76 -51.93 -0.40 0.71 16
41 H 0.16 0.87 8.14 -51.93 -0.42 0.45 16
LS Contribution 359.27 15.07 5.41 5.41
Total: -1.00 -35.29 359.27 -8.08 -43.37
By element:
Atomic # 1 Polarization: 11.89 SS G_CDS: -5.12 Total: 6.77 kcal
Atomic # 6 Polarization: -6.82 SS G_CDS: -0.81 Total: -7.63 kcal
Atomic # 7 Polarization: -49.23 SS G_CDS: 0.88 Total: -48.35 kcal
Atomic # 8 Polarization: -33.60 SS G_CDS: -2.62 Total: -36.21 kcal
Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal
Atomic # 16 Polarization: 22.14 SS G_CDS: -0.80 Total: 21.35 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -35.29 -8.08 -43.37 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001411270919.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.984 kcal
(2) G-P(sol) polarization free energy of solvation -35.290 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.306 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.366 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.382 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.94 seconds