Wall clock time and date at job start Sat Apr 11 2020 06:52:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.42898 * 114.00453 * 2 1
4 4 C 1.50704 * 112.49435 * 294.77024 * 3 2 1
5 5 O 1.21297 * 119.99596 * 141.01646 * 4 3 2
6 6 N 1.34777 * 120.00202 * 321.02371 * 4 3 2
7 7 C 1.39466 * 120.00082 * 174.77935 * 6 4 3
8 8 C 1.36123 * 126.21568 * 0.02562 * 7 6 4
9 9 C 1.39754 * 107.82466 * 179.97438 * 8 7 6
10 10 C 1.50701 * 125.83670 * 180.02562 * 9 8 7
11 11 N 1.30846 * 108.32674 * 0.02562 * 9 8 7
12 12 N 1.35253 * 126.21956 * 179.71281 * 7 6 4
13 13 C 1.46497 * 126.04475 * 0.03135 * 12 7 6
14 14 C 1.50704 * 109.47454 * 90.00333 * 13 12 7
15 15 H 1.07996 * 119.99692 * 359.97438 * 14 13 12
16 16 C 1.37870 * 120.00060 * 180.02562 * 14 13 12
17 17 N 1.31517 * 120.00495 * 359.97438 * 16 14 13
18 18 Si 1.86805 * 119.99746 * 179.97438 * 16 14 13
19 19 H 1.48496 * 109.47392 * 359.97438 * 18 16 14
20 20 H 1.48507 * 109.47132 * 119.99941 * 18 16 14
21 21 H 1.48506 * 109.47218 * 239.99629 * 18 16 14
22 22 C 1.53042 * 113.15155 * 164.98670 * 3 2 1
23 23 S 1.81502 * 89.86245 * 211.86559 * 22 3 2
24 24 O 1.42096 * 112.72031 * 280.43142 * 23 22 3
25 25 O 1.42096 * 112.77710 * 136.69573 * 23 22 3
26 26 C 1.53039 * 113.15426 * 64.55721 * 3 2 1
27 27 H 1.09004 * 109.46708 * 295.68947 * 1 2 3
28 28 H 1.08995 * 109.47282 * 175.68432 * 1 2 3
29 29 H 1.09000 * 109.46805 * 55.68646 * 1 2 3
30 30 H 0.96998 * 119.99687 * 354.77642 * 6 4 3
31 31 H 1.07994 * 126.08047 * 359.94766 * 8 7 6
32 32 H 1.09005 * 109.47104 * 89.99733 * 10 9 8
33 33 H 1.08989 * 109.47484 * 210.00226 * 10 9 8
34 34 H 1.09008 * 109.46749 * 330.00495 * 10 9 8
35 35 H 1.09003 * 109.47388 * 210.00474 * 13 12 7
36 36 H 1.09001 * 109.47113 * 329.99766 * 13 12 7
37 37 H 0.97001 * 120.00266 * 180.02562 * 17 16 14
38 38 H 1.08998 * 113.15386 * 327.10961 * 22 3 2
39 39 H 1.09007 * 113.14858 * 96.59555 * 22 3 2
40 40 H 1.08997 * 113.15128 * 263.40970 * 26 3 2
41 41 H 1.09002 * 113.14934 * 32.88600 * 26 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 1.7119 2.0694 -1.2643
5 8 1.4702 3.2569 -1.2124
6 7 1.7135 1.4333 -2.4524
7 6 1.3316 2.1138 -3.6083
8 6 0.9366 3.4143 -3.6825
9 6 0.6441 3.6970 -5.0196
10 6 0.1699 5.0223 -5.5579
11 7 0.8525 2.6143 -5.7241
12 7 1.2919 1.6031 -4.8602
13 6 1.6427 0.2335 -5.2439
14 6 0.4164 -0.6391 -5.1686
15 1 -0.5296 -0.2159 -4.8648
16 6 0.5023 -1.9779 -5.4866
17 7 1.6544 -2.4934 -5.8560
18 14 -1.0177 -3.0596 -5.3925
19 1 -2.1789 -2.2447 -4.9535
20 1 -1.2967 -3.6389 -6.7312
21 1 -0.7859 -4.1556 -4.4175
22 6 3.4967 1.3022 0.3645
23 16 3.3075 2.9360 1.1320
24 8 3.2974 3.9914 0.1806
25 8 3.9825 3.0399 2.3781
26 6 1.7029 2.1010 1.2706
27 1 -0.3633 0.4455 0.9261
28 1 -0.3633 -1.0247 -0.0773
29 1 -0.3633 0.5793 -0.8488
30 1 1.9804 0.5021 -2.5036
31 1 0.8621 4.1046 -2.8553
32 1 1.0305 5.6287 -5.8403
33 1 -0.4594 4.8552 -6.4320
34 1 -0.4044 5.5415 -4.7906
35 1 2.0295 0.2295 -6.2630
36 1 2.4041 -0.1503 -4.5650
37 1 1.7148 -3.4353 -6.0801
38 1 3.7613 0.5217 1.0780
39 1 4.1516 1.3108 -0.5068
40 1 0.8563 2.7783 1.1579
41 1 1.6210 1.4748 2.1591
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001411270919.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:36
Heat of formation + Delta-G solvation = -52.452030 kcal
Electronic energy + Delta-G solvation = -29097.429781 eV
Core-core repulsion = 24914.709230 eV
Total energy + Delta-G solvation = -4182.720551 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.108 amu
Computer time = 6.89 seconds
Orbital eigenvalues (eV)
-42.67742 -41.50362 -39.04558 -38.34637 -37.15672 -36.46361 -35.76702 -35.27899
-33.86368 -30.85871 -30.00876 -28.38131 -27.83724 -27.32348 -25.84746 -24.69406
-22.33230 -21.32827 -20.89833 -19.73825 -19.17249 -18.90566 -18.34578 -17.88648
-17.50194 -17.03686 -16.99996 -16.65821 -16.26769 -16.24994 -16.02294 -15.67027
-15.42752 -15.01827 -14.61955 -14.47082 -14.08370 -14.03457 -13.90178 -13.60159
-13.40816 -13.32154 -13.27316 -13.12920 -13.02037 -12.90259 -12.73279 -12.55088
-12.32942 -12.16322 -11.95900 -11.70527 -11.66731 -11.45396 -11.30777 -10.78651
-10.77738 -9.67693 -9.13317 -8.37824 -6.55400 -0.97827 0.53715 0.90575
1.13479 1.34070 1.36885 1.44887 1.49584 1.96666 2.01678 2.24974
2.32186 2.56329 2.87894 2.92941 3.02473 3.27220 3.44698 3.79939
4.14799 4.17456 4.24375 4.32071 4.39555 4.55822 4.65021 4.66508
4.69023 4.77062 4.79011 4.82574 4.89305 4.92919 5.17993 5.19848
5.49196 5.64661 5.74440 5.92384 6.03392 6.15755 6.52217 6.70985
6.97386 7.16704 8.69150
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.011191 B = 0.004292 C = 0.003414
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2501.308260 B = 6522.940722 C = 8200.697796
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.012 3.988
2 O -0.341 6.341
3 C 0.116 3.884
4 C 0.491 3.509
5 O -0.487 6.487
6 N -0.626 5.626
7 C 0.295 3.705
8 C -0.302 4.302
9 C 0.059 3.941
10 C -0.061 4.061
11 N -0.327 5.327
12 N -0.365 5.365
13 C 0.271 3.729
14 C -0.554 4.554
15 H 0.048 0.952
16 C 0.028 3.972
17 N -0.914 5.914
18 Si 0.969 3.031
19 H -0.274 1.274
20 H -0.276 1.276
21 H -0.264 1.264
22 C -0.587 4.587
23 S 2.447 3.553
24 O -0.917 6.917
25 O -0.934 6.934
26 C -0.604 4.604
27 H 0.081 0.919
28 H 0.109 0.891
29 H 0.027 0.973
30 H 0.423 0.577
31 H 0.172 0.828
32 H 0.089 0.911
33 H 0.073 0.927
34 H 0.094 0.906
35 H 0.028 0.972
36 H 0.045 0.955
37 H 0.274 0.726
38 H 0.198 0.802
39 H 0.141 0.859
40 H 0.147 0.853
41 H 0.198 0.802
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.641 6.666 17.197 18.454
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 O -0.259 6.259
3 C 0.070 3.930
4 C 0.275 3.725
5 O -0.359 6.359
6 N -0.274 5.274
7 C 0.072 3.928
8 C -0.334 4.334
9 C -0.107 4.107
10 C -0.119 4.119
11 N -0.152 5.152
12 N -0.150 5.150
13 C 0.152 3.848
14 C -0.592 4.592
15 H 0.067 0.933
16 C -0.174 4.174
17 N -0.552 5.552
18 Si 0.793 3.207
19 H -0.199 1.199
20 H -0.202 1.202
21 H -0.189 1.189
22 C -0.714 4.714
23 S 2.626 3.374
24 O -0.914 6.914
25 O -0.931 6.931
26 C -0.732 4.732
27 H 0.099 0.901
28 H 0.127 0.873
29 H 0.045 0.955
30 H 0.261 0.739
31 H 0.189 0.811
32 H 0.107 0.893
33 H 0.092 0.908
34 H 0.113 0.887
35 H 0.046 0.954
36 H 0.063 0.937
37 H 0.084 0.916
38 H 0.216 0.784
39 H 0.159 0.841
40 H 0.166 0.834
41 H 0.215 0.785
Dipole moment (debyes) X Y Z Total
from point charges 1.276 7.504 16.299 17.989
hybrid contribution -1.184 -1.966 -0.236 2.307
sum 0.092 5.539 16.063 16.991
Atomic orbital electron populations
1.23154 0.79003 1.04737 1.01501 1.88057 1.21572 1.21912 1.94391
1.21417 0.95854 0.86244 0.89532 1.21232 0.78396 0.88038 0.84819
1.90798 1.44884 1.14260 1.85957 1.42728 1.64713 1.15974 1.04022
1.18289 1.00943 0.92210 0.81325 1.21512 1.18594 0.94747 0.98527
1.22897 0.99027 0.96354 0.92374 1.20233 1.01862 0.88171 1.01655
1.77324 1.23685 0.96826 1.17348 1.49174 1.51613 1.11510 1.02727
1.19241 0.96380 0.72401 0.96741 1.21398 0.94891 0.94210 1.48685
0.93343 1.25687 0.99574 0.98636 0.93485 1.69999 1.25927 1.14762
1.44515 0.85339 0.78597 0.78331 0.78401 1.19885 1.20185 1.18907
1.31379 0.97083 1.26957 1.15967 1.07143 0.79018 0.76345 0.74895
1.93805 1.84723 1.51039 1.61822 1.93643 1.70995 1.87345 1.41165
1.31534 1.25425 1.12701 1.03541 0.90070 0.87316 0.95451 0.73929
0.81123 0.89264 0.90803 0.88699 0.95417 0.93723 0.91643 0.78411
0.84092 0.83434 0.78456
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.24 10.61 113.37 1.20 1.44 16
2 O -0.34 -7.44 10.28 -148.98 -1.53 -8.97 16
3 C 0.12 2.39 1.12 -11.51 -0.01 2.37 16
4 C 0.49 14.65 5.57 87.66 0.49 15.13 16
5 O -0.49 -16.21 10.72 18.96 0.20 -16.01 16
6 N -0.63 -22.14 5.34 -308.55 -1.65 -23.79 16
7 C 0.29 12.56 7.66 131.33 1.01 13.56 16
8 C -0.30 -12.26 9.58 22.14 0.21 -12.05 16
9 C 0.06 2.34 7.21 43.07 0.31 2.65 16
10 C -0.06 -1.69 10.44 71.24 0.74 -0.95 16
11 N -0.33 -15.47 12.56 -47.45 -0.60 -16.06 16
12 N -0.36 -17.55 3.60 -348.71 -1.26 -18.81 16
13 C 0.27 14.02 6.01 85.63 0.51 14.54 16
14 C -0.55 -30.07 9.39 25.60 0.24 -29.83 16
15 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16
16 C 0.03 1.47 5.46 84.65 0.46 1.93 16
17 N -0.91 -49.87 13.29 21.44 0.28 -49.58 16
18 Si 0.97 41.51 29.54 68.60 2.03 43.54 16
19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16
20 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16
21 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16
22 C -0.59 -8.46 7.35 72.00 0.53 -7.93 16
23 S 2.45 40.45 7.41 -56.49 -0.42 40.03 16
24 O -0.92 -24.11 15.40 -118.94 -1.83 -25.94 16
25 O -0.93 -18.50 18.18 -127.88 -2.32 -20.83 16
26 C -0.60 -8.06 6.18 72.00 0.45 -7.61 16
27 H 0.08 1.14 7.63 -2.38 -0.02 1.12 16
28 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16
29 H 0.03 0.68 7.35 -2.39 -0.02 0.66 16
30 H 0.42 14.57 7.74 -92.71 -0.72 13.86 16
31 H 0.17 6.60 5.85 -2.91 -0.02 6.58 16
32 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16
33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
34 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16
35 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16
36 H 0.04 2.25 7.50 -2.39 -0.02 2.23 16
37 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16
38 H 0.20 1.56 8.14 -2.39 -0.02 1.54 16
39 H 0.14 1.97 8.11 -2.38 -0.02 1.96 16
40 H 0.15 1.90 7.76 -2.39 -0.02 1.88 16
41 H 0.20 1.18 8.14 -2.39 -0.02 1.16 16
Total: -1.00 -77.85 359.27 -0.58 -78.43
By element:
Atomic # 1 Polarization: 24.35 SS G_CDS: 0.37 Total: 24.72 kcal
Atomic # 6 Polarization: -12.89 SS G_CDS: 6.14 Total: -6.75 kcal
Atomic # 7 Polarization: -105.02 SS G_CDS: -3.22 Total: -108.24 kcal
Atomic # 8 Polarization: -66.25 SS G_CDS: -5.48 Total: -71.74 kcal
Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal
Atomic # 16 Polarization: 40.45 SS G_CDS: -0.42 Total: 40.03 kcal
Total: -77.85 -0.58 -78.43 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001411270919.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.981 kcal
(2) G-P(sol) polarization free energy of solvation -77.849 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.433 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.452 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 6.89 seconds