Wall clock time and date at job start Sat Apr 11 2020 06:48:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86802 * 119.99567 * 2 1
4 4 H 1.48506 * 109.46963 * 180.02562 * 3 2 1
5 5 H 1.48501 * 109.47445 * 299.99869 * 3 2 1
6 6 H 1.48500 * 109.47088 * 60.00603 * 3 2 1
7 7 C 1.38812 * 120.00497 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00056 * 194.63546 * 7 2 1
9 9 N 1.36939 * 119.99416 * 14.62973 * 7 2 1
10 10 C 1.46973 * 120.59201 * 209.12142 * 9 7 2
11 11 C 1.53367 * 108.63702 * 235.25468 * 10 9 7
12 12 N 1.46966 * 108.63284 * 310.57720 * 11 10 9
13 13 C 1.34780 * 120.59460 * 235.20180 * 12 11 10
14 14 O 1.21624 * 120.00135 * 183.70283 * 13 12 11
15 15 C 1.47144 * 119.99539 * 3.69941 * 13 12 11
16 16 C 1.38087 * 127.86742 * 137.46565 * 15 13 12
17 17 C 1.38599 * 111.25509 * 180.15289 * 16 15 13
18 18 C 1.48417 * 121.24233 * 179.83396 * 17 16 15
19 19 C 1.39330 * 120.12005 * 359.46878 * 18 17 16
20 20 C 1.38024 * 119.87654 * 180.25865 * 19 18 17
21 21 C 1.38319 * 120.12128 * 0.02562 * 20 19 18
22 22 C 1.38320 * 120.24377 * 0.02562 * 21 20 19
23 23 C 1.38019 * 120.11888 * 359.97438 * 22 21 20
24 24 N 1.30320 * 117.51287 * 359.56383 * 17 16 15
25 25 S 1.56258 * 110.37569 * 0.24614 * 24 17 16
26 26 C 1.46967 * 118.81279 * 55.48244 * 12 11 10
27 27 C 1.46958 * 120.59681 * 29.15493 * 9 7 2
28 28 H 0.96993 * 120.00210 * 359.97438 * 1 2 3
29 29 H 1.09001 * 109.60680 * 115.50391 * 10 9 7
30 30 H 1.08995 * 109.74894 * 355.08384 * 10 9 7
31 31 H 1.08994 * 109.60899 * 190.83314 * 11 10 9
32 32 H 1.09002 * 109.60946 * 70.31836 * 11 10 9
33 33 H 1.07990 * 124.37912 * 359.97438 * 16 15 13
34 34 H 1.07992 * 120.05871 * 0.24945 * 19 18 17
35 35 H 1.07996 * 119.93600 * 180.02562 * 20 19 18
36 36 H 1.07996 * 119.87477 * 179.97438 * 21 20 19
37 37 H 1.07997 * 119.94135 * 179.97438 * 22 21 20
38 38 H 1.07996 * 120.06361 * 180.02562 * 23 22 21
39 39 H 1.08994 * 109.60897 * 64.26370 * 26 12 11
40 40 H 1.09004 * 109.60824 * 184.78052 * 26 12 11
41 41 H 1.09005 * 109.61024 * 244.48915 * 27 9 7
42 42 H 1.09000 * 109.61294 * 4.99447 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7102 1.3465 -0.0006
5 1 1.8914 2.3966 -1.2125
6 1 1.8914 2.3964 1.2126
7 6 2.0104 -1.2021 -0.0005
8 1 3.0641 -1.2173 0.2358
9 7 1.3590 -2.3686 -0.3006
10 6 1.8101 -3.6455 0.2705
11 6 2.0759 -4.6287 -0.8762
12 7 0.9135 -4.6263 -1.7756
13 6 0.2730 -5.7746 -2.0717
14 8 -0.6452 -5.7706 -2.8693
15 6 0.6847 -7.0332 -1.4300
16 6 -0.1247 -8.0277 -0.9177
17 6 0.6273 -9.0641 -0.3873
18 6 -0.0209 -10.2496 0.2268
19 6 -1.4103 -10.3329 0.2892
20 6 -2.0078 -11.4352 0.8662
21 6 -1.2298 -12.4558 1.3825
22 6 0.1499 -12.3778 1.3242
23 6 0.7579 -11.2801 0.7494
24 7 1.9248 -8.9613 -0.4529
25 16 2.3300 -7.6202 -1.1450
26 6 0.4659 -3.3503 -2.3512
27 6 0.1968 -2.3664 -1.2000
28 1 -0.4850 0.8400 0.0004
29 1 1.0365 -4.0471 0.9250
30 1 2.7267 -3.4910 0.8397
31 1 2.2240 -5.6302 -0.4725
32 1 2.9644 -4.3180 -1.4259
33 1 -1.2042 -8.0002 -0.9263
34 1 -2.0186 -9.5364 -0.1131
35 1 -3.0847 -11.5010 0.9147
36 1 -1.7015 -13.3163 1.8335
37 1 0.7526 -13.1772 1.7291
38 1 1.8352 -11.2203 0.7040
39 1 1.2424 -2.9509 -3.0035
40 1 -0.4496 -3.5075 -2.9217
41 1 -0.6918 -2.6770 -0.6503
42 1 0.0485 -1.3648 -1.6037
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000330983971.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:09
Heat of formation + Delta-G solvation = 73.876773 kcal
Electronic energy + Delta-G solvation = -26491.015258 eV
Core-core repulsion = 22756.914749 eV
Total energy + Delta-G solvation = -3734.100509 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 343.110 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.36269 -39.59564 -38.28281 -36.87140 -34.05146 -32.11725 -31.53945 -31.28148
-31.02698 -30.19915 -27.31047 -25.82194 -24.05421 -23.49748 -22.81966 -22.23916
-20.95242 -20.13250 -19.10047 -18.35271 -17.51076 -16.83996 -16.25885 -15.82036
-15.51094 -15.20738 -14.86844 -14.75469 -14.48324 -14.43598 -13.81879 -13.73000
-13.60438 -13.40141 -13.30630 -13.17381 -12.92945 -12.54550 -11.98109 -11.74789
-11.48408 -11.28506 -11.23778 -10.96732 -10.82983 -10.74608 -10.62388 -10.33745
-10.07858 -10.02848 -9.88793 -9.72096 -9.58245 -9.19674 -8.68162 -8.41484
-8.20989 -6.78476 -5.90632 -3.38444 0.16454 0.86679 1.10035 1.16165
1.68303 2.31765 2.92876 3.29103 3.30656 3.38797 3.40340 3.65941
4.24556 4.38961 4.57472 4.64259 4.73401 4.81752 4.88586 5.09276
5.18523 5.21424 5.27181 5.38763 5.53051 5.58675 5.61820 5.70214
5.75149 5.79628 6.01445 6.07247 6.20085 6.21158 6.24806 6.25991
6.37604 6.55054 6.58914 6.69051 6.71829 7.15288 7.47905 7.63722
7.67759 8.26581 8.30239 9.05700 9.67274 10.23737 11.16814
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.021203 B = 0.002435 C = 0.002426
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1320.266687 B =11494.040000 C =11536.607343
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.004 3.996
3 Si 0.906 3.094
4 H -0.277 1.277
5 H -0.288 1.288
6 H -0.289 1.289
7 C -0.258 4.258
8 H 0.069 0.931
9 N -0.590 5.590
10 C 0.133 3.867
11 C 0.080 3.920
12 N -0.584 5.584
13 C 0.586 3.414
14 O -0.535 6.535
15 C -0.250 4.250
16 C -0.113 4.113
17 C 0.130 3.870
18 C -0.025 4.025
19 C -0.098 4.098
20 C -0.120 4.120
21 C -0.113 4.113
22 C -0.124 4.124
23 C -0.085 4.085
24 N -0.534 5.534
25 S 0.449 5.551
26 C 0.087 3.913
27 C 0.157 3.843
28 H 0.256 0.744
29 H 0.025 0.975
30 H 0.070 0.930
31 H 0.066 0.934
32 H 0.077 0.923
33 H 0.173 0.827
34 H 0.129 0.871
35 H 0.127 0.873
36 H 0.123 0.877
37 H 0.125 0.875
38 H 0.131 0.869
39 H 0.067 0.933
40 H 0.084 0.916
41 H 0.025 0.975
42 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.899 -21.425 0.109 21.444
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.546 5.546
2 C -0.195 4.195
3 Si 0.736 3.264
4 H -0.202 1.202
5 H -0.214 1.214
6 H -0.216 1.216
7 C -0.387 4.387
8 H 0.087 0.913
9 N -0.313 5.313
10 C 0.005 3.995
11 C -0.046 4.046
12 N -0.316 5.316
13 C 0.371 3.629
14 O -0.414 6.414
15 C -0.382 4.382
16 C -0.147 4.147
17 C -0.041 4.041
18 C -0.029 4.029
19 C -0.118 4.118
20 C -0.138 4.138
21 C -0.132 4.132
22 C -0.142 4.142
23 C -0.105 4.105
24 N -0.364 5.364
25 S 0.607 5.393
26 C -0.035 4.035
27 C 0.031 3.969
28 H 0.066 0.934
29 H 0.042 0.958
30 H 0.089 0.911
31 H 0.084 0.916
32 H 0.095 0.905
33 H 0.190 0.810
34 H 0.147 0.853
35 H 0.145 0.855
36 H 0.141 0.859
37 H 0.143 0.857
38 H 0.149 0.851
39 H 0.085 0.915
40 H 0.102 0.898
41 H 0.044 0.956
42 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 2.584 -21.339 -0.269 21.496
hybrid contribution -1.433 0.712 0.232 1.617
sum 1.150 -20.627 -0.037 20.659
Atomic orbital electron populations
1.69988 1.05325 1.25739 1.53510 1.25134 0.95375 0.98620 1.00333
0.86170 0.79291 0.83590 0.77369 1.20163 1.21429 1.21619 1.19235
0.91942 0.84127 1.43381 0.91323 1.44002 1.34122 1.02048 1.51111
1.21242 0.98787 0.87276 0.92162 1.22732 0.88027 1.00202 0.93675
1.47990 1.30611 1.07023 1.45937 1.16817 0.82667 0.81685 0.81686
1.90793 1.29961 1.85634 1.34976 1.26803 1.01348 1.01408 1.08690
1.21816 1.02409 0.91303 0.99162 1.19379 0.87005 0.96382 1.01308
1.18166 0.92734 0.92286 0.99727 1.21267 0.93271 0.98523 0.98765
1.21081 1.00122 0.93859 0.98761 1.21268 0.93976 0.98757 0.99175
1.21124 0.94905 0.98152 1.00015 1.21259 1.00449 0.92628 0.96213
1.71995 1.18449 1.22010 1.23950 1.81809 1.07551 1.04464 1.45428
1.22760 1.00093 0.82301 0.98374 1.21337 0.88782 0.98325 0.88451
0.93394 0.95752 0.91116 0.91618 0.90481 0.80992 0.85304 0.85515
0.85912 0.85750 0.85124 0.91517 0.89759 0.95649 0.87708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.11 11.09 55.49 0.62 -24.49 16
2 C 0.00 0.12 4.97 -17.43 -0.09 0.03 16
3 Si 0.91 20.75 29.58 -169.99 -5.03 15.72 16
4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16
5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
7 C -0.26 -6.63 9.59 -15.06 -0.14 -6.77 16
8 H 0.07 1.72 7.87 -52.49 -0.41 1.31 16
9 N -0.59 -13.91 2.97 -171.77 -0.51 -14.42 16
10 C 0.13 2.57 6.67 -3.59 -0.02 2.54 16
11 C 0.08 1.27 6.20 -3.60 -0.02 1.25 16
12 N -0.58 -10.38 2.94 -173.59 -0.51 -10.89 16
13 C 0.59 10.33 7.64 -12.64 -0.10 10.23 16
14 O -0.54 -10.85 16.52 5.26 0.09 -10.76 16
15 C -0.25 -3.67 5.80 -36.02 -0.21 -3.88 16
16 C -0.11 -1.51 9.78 -39.50 -0.39 -1.89 16
17 C 0.13 1.68 6.58 -84.18 -0.55 1.12 16
18 C -0.02 -0.28 5.88 -104.89 -0.62 -0.90 16
19 C -0.10 -0.96 9.45 -39.25 -0.37 -1.33 16
20 C -0.12 -0.99 10.03 -39.63 -0.40 -1.39 16
21 C -0.11 -0.88 10.04 -39.52 -0.40 -1.28 16
22 C -0.12 -1.05 10.03 -39.63 -0.40 -1.45 16
23 C -0.09 -0.90 9.60 -39.25 -0.38 -1.27 16
24 N -0.53 -7.05 10.50 25.58 0.27 -6.78 16
25 S 0.45 5.51 20.36 -107.50 -2.19 3.32 16
26 C 0.09 1.68 6.62 -3.36 -0.02 1.66 16
27 C 0.16 3.61 5.51 -3.37 -0.02 3.59 16
28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16
29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.07 1.28 7.94 -51.93 -0.41 0.87 16
31 H 0.07 0.90 3.85 -29.77 -0.11 0.79 16
32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16
33 H 0.17 2.02 6.65 -52.49 -0.35 1.67 16
34 H 0.13 1.09 6.46 -52.49 -0.34 0.75 16
35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16
36 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16
37 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16
38 H 0.13 1.36 7.62 -52.49 -0.40 0.96 16
39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16
40 H 0.08 1.61 7.01 -51.93 -0.36 1.24 16
41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
42 H 0.11 2.65 5.96 -51.93 -0.31 2.34 16
LS Contribution 358.07 15.07 5.40 5.40
Total: -1.00 -30.93 358.07 -10.79 -41.72
By element:
Atomic # 1 Polarization: 5.72 SS G_CDS: -4.80 Total: 0.92 kcal
Atomic # 6 Polarization: 4.38 SS G_CDS: -4.12 Total: 0.26 kcal
Atomic # 7 Polarization: -56.44 SS G_CDS: -0.14 Total: -56.58 kcal
Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal
Atomic # 16 Polarization: 5.51 SS G_CDS: -2.19 Total: 3.32 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -30.93 -10.79 -41.72 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330983971.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.597 kcal
(2) G-P(sol) polarization free energy of solvation -30.934 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.663 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.877 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds