Wall clock time and date at job start Sat Apr 11 2020 06:48:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86802 * 119.99567 * 2 1
4 4 H 1.48506 * 109.46963 * 180.02562 * 3 2 1
5 5 H 1.48501 * 109.47445 * 299.99869 * 3 2 1
6 6 H 1.48500 * 109.47088 * 60.00603 * 3 2 1
7 7 C 1.38812 * 120.00497 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00056 * 194.63546 * 7 2 1
9 9 N 1.36939 * 119.99416 * 14.62973 * 7 2 1
10 10 C 1.46973 * 120.59201 * 209.12142 * 9 7 2
11 11 C 1.53367 * 108.63702 * 235.25468 * 10 9 7
12 12 N 1.46966 * 108.63284 * 310.57720 * 11 10 9
13 13 C 1.34780 * 120.59460 * 235.20180 * 12 11 10
14 14 O 1.21624 * 120.00135 * 183.70283 * 13 12 11
15 15 C 1.47144 * 119.99539 * 3.69941 * 13 12 11
16 16 C 1.38087 * 127.86742 * 137.46565 * 15 13 12
17 17 C 1.38599 * 111.25509 * 180.15289 * 16 15 13
18 18 C 1.48417 * 121.24233 * 179.83396 * 17 16 15
19 19 C 1.39330 * 120.12005 * 359.46878 * 18 17 16
20 20 C 1.38024 * 119.87654 * 180.25865 * 19 18 17
21 21 C 1.38319 * 120.12128 * 0.02562 * 20 19 18
22 22 C 1.38320 * 120.24377 * 0.02562 * 21 20 19
23 23 C 1.38019 * 120.11888 * 359.97438 * 22 21 20
24 24 N 1.30320 * 117.51287 * 359.56383 * 17 16 15
25 25 S 1.56258 * 110.37569 * 0.24614 * 24 17 16
26 26 C 1.46967 * 118.81279 * 55.48244 * 12 11 10
27 27 C 1.46958 * 120.59681 * 29.15493 * 9 7 2
28 28 H 0.96993 * 120.00210 * 359.97438 * 1 2 3
29 29 H 1.09001 * 109.60680 * 115.50391 * 10 9 7
30 30 H 1.08995 * 109.74894 * 355.08384 * 10 9 7
31 31 H 1.08994 * 109.60899 * 190.83314 * 11 10 9
32 32 H 1.09002 * 109.60946 * 70.31836 * 11 10 9
33 33 H 1.07990 * 124.37912 * 359.97438 * 16 15 13
34 34 H 1.07992 * 120.05871 * 0.24945 * 19 18 17
35 35 H 1.07996 * 119.93600 * 180.02562 * 20 19 18
36 36 H 1.07996 * 119.87477 * 179.97438 * 21 20 19
37 37 H 1.07997 * 119.94135 * 179.97438 * 22 21 20
38 38 H 1.07996 * 120.06361 * 180.02562 * 23 22 21
39 39 H 1.08994 * 109.60897 * 64.26370 * 26 12 11
40 40 H 1.09004 * 109.60824 * 184.78052 * 26 12 11
41 41 H 1.09005 * 109.61024 * 244.48915 * 27 9 7
42 42 H 1.09000 * 109.61294 * 4.99447 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7102 1.3465 -0.0006
5 1 1.8914 2.3966 -1.2125
6 1 1.8914 2.3964 1.2126
7 6 2.0104 -1.2021 -0.0005
8 1 3.0641 -1.2173 0.2358
9 7 1.3590 -2.3686 -0.3006
10 6 1.8101 -3.6455 0.2705
11 6 2.0759 -4.6287 -0.8762
12 7 0.9135 -4.6263 -1.7756
13 6 0.2730 -5.7746 -2.0717
14 8 -0.6452 -5.7706 -2.8693
15 6 0.6847 -7.0332 -1.4300
16 6 -0.1247 -8.0277 -0.9177
17 6 0.6273 -9.0641 -0.3873
18 6 -0.0209 -10.2496 0.2268
19 6 -1.4103 -10.3329 0.2892
20 6 -2.0078 -11.4352 0.8662
21 6 -1.2298 -12.4558 1.3825
22 6 0.1499 -12.3778 1.3242
23 6 0.7579 -11.2801 0.7494
24 7 1.9248 -8.9613 -0.4529
25 16 2.3300 -7.6202 -1.1450
26 6 0.4659 -3.3503 -2.3512
27 6 0.1968 -2.3664 -1.2000
28 1 -0.4850 0.8400 0.0004
29 1 1.0365 -4.0471 0.9250
30 1 2.7267 -3.4910 0.8397
31 1 2.2240 -5.6302 -0.4725
32 1 2.9644 -4.3180 -1.4259
33 1 -1.2042 -8.0002 -0.9263
34 1 -2.0186 -9.5364 -0.1131
35 1 -3.0847 -11.5010 0.9147
36 1 -1.7015 -13.3163 1.8335
37 1 0.7526 -13.1772 1.7291
38 1 1.8352 -11.2203 0.7040
39 1 1.2424 -2.9509 -3.0035
40 1 -0.4496 -3.5075 -2.9217
41 1 -0.6918 -2.6770 -0.6503
42 1 0.0485 -1.3648 -1.6037
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000330983971.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:09
Heat of formation + Delta-G solvation = 56.936466 kcal
Electronic energy + Delta-G solvation = -26491.749845 eV
Core-core repulsion = 22756.914749 eV
Total energy + Delta-G solvation = -3734.835096 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 343.110 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.44678 -40.82432 -39.13550 -38.46208 -35.76160 -33.33923 -33.03714 -32.27768
-31.98252 -31.50838 -28.94620 -27.01372 -25.56278 -24.87349 -23.97553 -23.22307
-22.15476 -21.34867 -20.36277 -19.74066 -18.54134 -18.23115 -17.52189 -17.15056
-16.77940 -16.57726 -16.17208 -15.72270 -15.55100 -15.52549 -15.45084 -15.23301
-15.08513 -14.61342 -14.44070 -14.13183 -14.05309 -13.69918 -13.43993 -13.14528
-12.75774 -12.56124 -12.50163 -12.45278 -12.30928 -12.07738 -11.97737 -11.91871
-11.73701 -11.64889 -11.27334 -10.87453 -10.64629 -10.50593 -9.97948 -9.87064
-9.09060 -8.68024 -7.88657 -5.39645 -0.87551 -0.03301 0.09454 0.48872
0.68433 1.35598 1.48782 1.51512 1.59316 1.61624 1.94838 2.50810
2.94760 3.14139 3.27673 3.50641 3.60054 3.78009 3.96604 4.07020
4.10978 4.13816 4.21051 4.31819 4.36845 4.41512 4.52488 4.59365
4.61211 4.66388 4.72812 4.77874 4.99603 5.01302 5.11361 5.16171
5.23826 5.38358 5.53891 5.59034 5.59640 5.65685 5.70616 6.04440
6.23485 6.35355 6.85574 7.09081 7.76620 8.30137 9.16958
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.021203 B = 0.002435 C = 0.002426
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1320.266687 B =11494.040000 C =11536.607343
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.937 5.937
2 C -0.050 4.050
3 Si 0.970 3.030
4 H -0.262 1.262
5 H -0.292 1.292
6 H -0.296 1.296
7 C -0.260 4.260
8 H 0.078 0.922
9 N -0.607 5.607
10 C 0.129 3.871
11 C 0.090 3.910
12 N -0.589 5.589
13 C 0.591 3.409
14 O -0.567 6.567
15 C -0.280 4.280
16 C -0.107 4.107
17 C 0.128 3.872
18 C -0.052 4.052
19 C -0.108 4.108
20 C -0.123 4.123
21 C -0.108 4.108
22 C -0.127 4.127
23 C -0.099 4.099
24 N -0.545 5.545
25 S 0.492 5.508
26 C 0.103 3.897
27 C 0.168 3.832
28 H 0.251 0.749
29 H 0.013 0.987
30 H 0.086 0.914
31 H 0.091 0.909
32 H 0.095 0.905
33 H 0.182 0.818
34 H 0.136 0.864
35 H 0.151 0.849
36 H 0.152 0.848
37 H 0.147 0.853
38 H 0.125 0.875
39 H 0.078 0.922
40 H 0.082 0.918
41 H -0.005 1.005
42 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.054 -23.699 0.644 23.796
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.245 4.245
3 Si 0.798 3.202
4 H -0.186 1.186
5 H -0.218 1.218
6 H -0.223 1.223
7 C -0.390 4.390
8 H 0.095 0.905
9 N -0.330 5.330
10 C 0.002 3.998
11 C -0.035 4.035
12 N -0.320 5.320
13 C 0.378 3.622
14 O -0.448 6.448
15 C -0.413 4.413
16 C -0.142 4.142
17 C -0.041 4.041
18 C -0.056 4.056
19 C -0.128 4.128
20 C -0.141 4.141
21 C -0.127 4.127
22 C -0.144 4.144
23 C -0.119 4.119
24 N -0.375 5.375
25 S 0.652 5.348
26 C -0.021 4.021
27 C 0.041 3.959
28 H 0.060 0.940
29 H 0.031 0.969
30 H 0.104 0.896
31 H 0.108 0.892
32 H 0.113 0.887
33 H 0.200 0.800
34 H 0.153 0.847
35 H 0.168 0.832
36 H 0.170 0.830
37 H 0.165 0.835
38 H 0.143 0.857
39 H 0.096 0.904
40 H 0.101 0.899
41 H 0.013 0.987
42 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 3.782 -23.648 0.274 23.950
hybrid contribution -1.818 1.235 0.155 2.203
sum 1.964 -22.413 0.429 22.503
Atomic orbital electron populations
1.70149 1.06813 1.25973 1.55384 1.25883 0.96034 1.01704 1.00903
0.85169 0.78792 0.79665 0.76551 1.18633 1.21839 1.22319 1.19602
0.92445 0.84983 1.41936 0.90465 1.44241 1.33966 1.03075 1.51762
1.21409 0.98869 0.86121 0.93373 1.22708 0.87825 1.00616 0.92342
1.48009 1.31192 1.06587 1.46254 1.17082 0.81776 0.82324 0.81058
1.90766 1.31278 1.86304 1.36427 1.26567 1.03528 1.00752 1.10413
1.22015 1.03072 0.90818 0.98258 1.19545 0.86817 0.96769 1.00989
1.18300 0.93600 0.92374 1.01331 1.21466 0.92785 0.99478 0.99063
1.21428 1.01511 0.93266 0.97870 1.21668 0.93741 0.99313 0.97989
1.21423 0.95685 0.97983 0.99336 1.21342 1.00282 0.93323 0.96982
1.71952 1.18778 1.22519 1.24274 1.81530 1.05310 1.03661 1.44341
1.22398 1.00546 0.82335 0.96776 1.21039 0.87882 0.97781 0.89175
0.93996 0.96914 0.89603 0.89154 0.88690 0.80044 0.84670 0.83172
0.83042 0.83534 0.85734 0.90403 0.89924 0.98692 0.90445
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -53.81 11.09 21.65 0.24 -53.57 16
2 C -0.05 -2.66 4.97 84.86 0.42 -2.24 16
3 Si 0.97 42.97 29.58 68.60 2.03 45.00 16
4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16
5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16
6 H -0.30 -13.32 7.11 99.48 0.71 -12.62 16
7 C -0.26 -13.34 9.59 84.03 0.81 -12.53 16
8 H 0.08 3.77 7.87 -2.91 -0.02 3.75 16
9 N -0.61 -28.77 2.97 -697.35 -2.07 -30.84 16
10 C 0.13 4.87 6.67 86.41 0.58 5.44 16
11 C 0.09 2.73 6.20 86.41 0.54 3.26 16
12 N -0.59 -20.62 2.94 -821.36 -2.42 -23.04 16
13 C 0.59 20.61 7.64 86.58 0.66 21.27 16
14 O -0.57 -23.16 16.52 -4.11 -0.07 -23.23 16
15 C -0.28 -7.98 5.80 24.57 0.14 -7.84 16
16 C -0.11 -2.77 9.78 22.32 0.22 -2.56 16
17 C 0.13 3.20 6.58 42.17 0.28 3.47 16
18 C -0.05 -1.13 5.88 -20.04 -0.12 -1.25 16
19 C -0.11 -1.95 9.45 22.48 0.21 -1.74 16
20 C -0.12 -1.71 10.03 22.24 0.22 -1.49 16
21 C -0.11 -1.35 10.04 22.31 0.22 -1.13 16
22 C -0.13 -1.85 10.03 22.24 0.22 -1.62 16
23 C -0.10 -1.95 9.60 22.48 0.22 -1.74 16
24 N -0.54 -13.65 10.50 -72.97 -0.77 -14.41 16
25 S 0.49 11.23 20.36 -56.49 -1.15 10.08 16
26 C 0.10 3.99 6.62 86.56 0.57 4.56 16
27 C 0.17 7.95 5.51 86.57 0.48 8.43 16
28 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16
29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16
30 H 0.09 2.96 7.94 -2.39 -0.02 2.94 16
31 H 0.09 2.30 3.85 -16.49 -0.06 2.23 16
32 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16
33 H 0.18 4.17 6.65 -2.92 -0.02 4.15 16
34 H 0.14 2.15 6.46 -2.91 -0.02 2.13 16
35 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16
36 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16
37 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16
38 H 0.12 2.50 7.62 -2.91 -0.02 2.48 16
39 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16
40 H 0.08 3.23 7.01 -2.39 -0.02 3.21 16
41 H -0.01 -0.26 8.14 -2.38 -0.02 -0.28 16
42 H 0.08 4.10 5.96 -2.39 -0.01 4.08 16
Total: -1.00 -67.73 358.07 2.48 -65.26
By element:
Atomic # 1 Polarization: 11.44 SS G_CDS: 1.01 Total: 12.45 kcal
Atomic # 6 Polarization: 6.64 SS G_CDS: 5.67 Total: 12.31 kcal
Atomic # 7 Polarization: -116.85 SS G_CDS: -5.01 Total: -121.86 kcal
Atomic # 8 Polarization: -23.16 SS G_CDS: -0.07 Total: -23.23 kcal
Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal
Atomic # 16 Polarization: 11.23 SS G_CDS: -1.15 Total: 10.08 kcal
Total: -67.73 2.48 -65.26 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330983971.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.192 kcal
(2) G-P(sol) polarization free energy of solvation -67.733 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.460 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.256 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.936 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds