Wall clock time and date at job start Sat Apr 11 2020 06:48:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45194 * 1
3 3 C 1.34230 * 117.00115 * 2 1
4 4 O 1.20828 * 119.99471 * 359.97438 * 3 2 1
5 5 C 1.50692 * 120.00224 * 180.02562 * 3 2 1
6 6 N 1.46502 * 109.47370 * 179.97438 * 5 3 2
7 7 C 1.36941 * 119.99383 * 84.99805 * 6 5 3
8 8 H 1.08009 * 119.99329 * 216.52070 * 7 6 5
9 9 C 1.38810 * 120.00609 * 36.52776 * 7 6 5
10 10 N 1.31621 * 119.99890 * 22.94475 * 9 7 6
11 11 Si 1.86793 * 120.00116 * 202.94832 * 9 7 6
12 12 H 1.48500 * 109.47305 * 359.97438 * 11 9 7
13 13 H 1.48497 * 109.47326 * 120.00069 * 11 9 7
14 14 H 1.48501 * 109.47126 * 240.00026 * 11 9 7
15 15 S 1.65591 * 119.99977 * 265.00155 * 6 5 3
16 16 O 1.42109 * 106.39945 * 199.14905 * 15 6 5
17 17 O 1.42099 * 106.40280 * 332.06510 * 15 6 5
18 18 C 1.76192 * 107.22084 * 85.61012 * 15 6 5
19 19 C 1.34861 * 125.96632 * 89.99801 * 18 15 6
20 20 N 1.36309 * 106.68755 * 179.97438 * 19 18 15
21 21 C 1.35418 * 107.40424 * 0.04412 * 20 19 18
22 22 N 1.30098 * 108.62288 * 359.66769 * 21 20 19
23 23 C 1.51040 * 123.98549 * 179.87817 * 21 20 19
24 24 C 1.53400 * 108.20814 * 344.04977 * 23 21 20
25 25 C 1.53155 * 109.23904 * 48.82780 * 24 23 21
26 26 C 1.46476 * 127.77442 * 180.02562 * 20 19 18
27 27 H 1.08997 * 109.47262 * 299.99779 * 1 2 3
28 28 H 1.08996 * 109.47384 * 60.00132 * 1 2 3
29 29 H 1.09003 * 109.47361 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.47500 * 59.99379 * 5 3 2
31 31 H 1.09002 * 109.47311 * 299.99722 * 5 3 2
32 32 H 0.96994 * 120.00018 * 179.97438 * 10 9 7
33 33 H 1.07999 * 126.65233 * 359.97438 * 19 18 15
34 34 H 1.09004 * 109.71640 * 224.37504 * 23 21 20
35 35 H 1.08996 * 109.75399 * 103.74569 * 23 21 20
36 36 H 1.09000 * 109.51078 * 288.90439 * 24 23 21
37 37 H 1.09002 * 109.51187 * 168.75776 * 24 23 21
38 38 H 1.08997 * 109.47062 * 170.50403 * 25 24 23
39 39 H 1.09005 * 109.46192 * 50.52052 * 25 24 23
40 40 H 1.09005 * 109.58147 * 282.67087 * 26 20 19
41 41 H 1.09003 * 109.58230 * 43.07922 * 26 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4519 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4032 2.2093 -0.0005
5 6 3.5662 1.2749 -0.0006
6 7 3.9816 2.6798 -0.0011
7 6 4.0770 3.3659 1.1802
8 1 3.7987 4.4086 1.2230
9 6 4.5315 2.7214 2.3225
10 7 5.2781 1.6426 2.2166
11 14 4.0835 3.3850 4.0101
12 1 3.2420 4.5990 3.8573
13 1 3.3297 2.3515 4.7644
14 1 5.3230 3.7325 4.7505
15 16 4.3357 3.4380 -1.4300
16 8 5.1114 4.5809 -1.0963
17 8 4.7859 2.4261 -2.3203
18 6 2.8179 4.0422 -2.0900
19 6 2.2777 5.2548 -1.8521
20 7 1.1110 5.3082 -2.5549
21 6 0.9726 4.1260 -3.2006
22 7 2.0000 3.3779 -2.9225
23 6 -0.1983 3.7821 -4.0906
24 6 -1.3254 4.7837 -3.8083
25 6 -0.7565 6.2054 -3.8390
26 6 0.1562 6.4168 -2.6258
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3634 -1.0277 -0.0005
30 1 3.9557 0.7809 -0.8908
31 1 3.9563 0.7806 0.8892
32 1 5.5960 1.1924 3.0148
33 1 2.6897 6.0325 -1.2262
34 1 -0.5418 2.7709 -3.8722
35 1 0.1012 3.8509 -5.1364
36 1 -1.7524 4.5837 -2.8256
37 1 -2.0994 4.6849 -4.5694
38 1 -1.5747 6.9248 -3.8076
39 1 -0.1829 6.3474 -4.7549
40 1 -0.4440 6.4407 -1.7162
41 1 0.6961 7.3575 -2.7345
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000355620316.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:31
Heat of formation + Delta-G solvation = -111.772389 kcal
Electronic energy + Delta-G solvation = -29793.652121 eV
Core-core repulsion = 25608.359246 eV
Total energy + Delta-G solvation = -4185.292875 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.108 amu
Computer time = 1.30 seconds
Orbital eigenvalues (eV)
-43.38278 -41.20787 -38.03184 -37.84819 -37.55285 -36.74046 -36.62117 -34.32385
-33.39004 -30.98497 -30.03547 -29.63937 -27.85790 -25.87344 -25.42945 -23.37990
-23.17980 -22.12259 -20.35794 -20.07585 -19.22649 -18.63472 -18.51351 -18.26958
-17.23345 -17.20066 -17.02888 -16.86059 -16.52684 -16.21394 -15.46312 -15.15990
-15.14592 -15.00456 -14.69125 -14.46927 -14.38367 -14.35106 -13.63700 -13.34731
-13.06723 -12.99367 -12.97625 -12.85694 -12.85141 -12.60888 -12.46560 -12.37512
-12.10628 -12.05358 -12.01342 -11.91362 -11.65358 -11.47833 -11.15009 -10.98089
-10.72352 -9.83678 -9.67873 -8.26696 -6.02576 -0.30278 0.67750 1.41602
1.45012 1.47726 1.59363 1.63392 1.71876 1.86972 2.37615 2.69019
2.87386 3.14767 3.20244 3.53105 3.62307 3.75310 3.80804 3.97220
4.14343 4.27459 4.28319 4.34456 4.35879 4.36187 4.43016 4.45300
4.66830 4.79260 4.82540 4.86092 4.91292 5.01659 5.13399 5.23182
5.24671 5.29536 5.48618 5.66837 6.12004 6.37822 6.82315 6.97124
6.99426 7.35694 8.79328
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.012028 B = 0.005068 C = 0.004610
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2327.295032 B = 5523.511640 C = 6072.786888
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.373 6.373
3 C 0.443 3.557
4 O -0.511 6.511
5 C 0.125 3.875
6 N -0.832 5.832
7 C -0.311 4.311
8 H 0.088 0.912
9 C 0.001 3.999
10 N -0.889 5.889
11 Si 0.975 3.025
12 H -0.265 1.265
13 H -0.275 1.275
14 H -0.274 1.274
15 S 2.693 3.307
16 O -0.988 6.988
17 O -1.010 7.010
18 C -0.562 4.562
19 C 0.071 3.929
20 N -0.445 5.445
21 C 0.202 3.798
22 N -0.455 5.455
23 C -0.034 4.034
24 C -0.119 4.119
25 C -0.127 4.127
26 C 0.084 3.916
27 H 0.054 0.946
28 H 0.055 0.945
29 H 0.133 0.867
30 H 0.105 0.895
31 H 0.140 0.860
32 H 0.275 0.725
33 H 0.204 0.796
34 H 0.092 0.908
35 H 0.104 0.896
36 H 0.064 0.936
37 H 0.115 0.885
38 H 0.125 0.875
39 H 0.077 0.923
40 H 0.098 0.902
41 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.768 5.941 -8.291 20.487
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 O -0.289 6.289
3 C 0.284 3.716
4 O -0.398 6.398
5 C -0.004 4.004
6 N -0.662 5.662
7 C -0.444 4.444
8 H 0.106 0.894
9 C -0.203 4.203
10 N -0.528 5.528
11 Si 0.799 3.201
12 H -0.189 1.189
13 H -0.201 1.201
14 H -0.200 1.200
15 S 2.790 3.210
16 O -0.978 6.978
17 O -1.000 7.000
18 C -0.775 4.775
19 C -0.072 4.072
20 N -0.125 5.125
21 C -0.064 4.064
22 N -0.173 5.173
23 C -0.073 4.073
24 C -0.156 4.156
25 C -0.165 4.165
26 C -0.036 4.036
27 H 0.073 0.927
28 H 0.073 0.927
29 H 0.151 0.849
30 H 0.123 0.877
31 H 0.157 0.843
32 H 0.085 0.915
33 H 0.221 0.779
34 H 0.110 0.890
35 H 0.123 0.877
36 H 0.083 0.917
37 H 0.133 0.867
38 H 0.143 0.857
39 H 0.096 0.904
40 H 0.116 0.884
41 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -17.039 5.577 -8.967 20.046
hybrid contribution -0.558 0.964 1.356 1.755
sum -17.597 6.542 -7.611 20.258
Atomic orbital electron populations
1.23418 0.75663 1.05269 1.01752 1.86515 1.24581 1.33372 1.84446
1.25091 0.93296 0.81463 0.71718 1.90534 1.67060 1.36837 1.45368
1.20878 0.85786 0.86305 1.07472 1.52313 1.77823 1.17306 1.18728
1.19219 1.42601 0.96846 0.85770 0.89402 1.26110 0.93872 0.97456
1.02897 1.70015 1.30286 1.21373 1.31143 0.85163 0.78367 0.78672
0.77926 1.18862 1.20058 1.19978 1.02110 0.73320 0.72980 0.72638
1.93422 1.67337 1.52861 1.84133 1.93379 1.80515 1.59295 1.66803
1.33011 1.24340 1.03720 1.16380 1.22652 0.87770 0.98898 0.97869
1.45846 1.17093 1.15229 1.34369 1.24418 0.98646 0.83271 1.00111
1.69929 1.02852 1.30798 1.13741 1.20482 0.88263 1.01645 0.96921
1.21705 0.96960 0.93019 1.03964 1.21962 0.99681 0.98662 0.96153
1.22616 0.90719 0.87725 1.02545 0.92698 0.92654 0.84851 0.87705
0.84348 0.91542 0.77901 0.88981 0.87739 0.91724 0.86712 0.85686
0.90397 0.88372 0.86922
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 38.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.92 10.56 113.37 1.20 2.12 16
2 O -0.37 -14.51 10.56 -51.41 -0.54 -15.05 16
3 C 0.44 20.40 8.00 71.23 0.57 20.97 16
4 O -0.51 -24.69 15.58 21.96 0.34 -24.35 16
5 C 0.13 6.23 5.90 85.63 0.50 6.74 16
6 N -0.83 -44.24 2.35 -347.17 -0.81 -45.06 16
7 C -0.31 -17.01 8.69 84.03 0.73 -16.27 16
8 H 0.09 4.73 7.93 -2.91 -0.02 4.70 16
9 C 0.00 0.05 4.97 84.86 0.42 0.47 16
10 N -0.89 -48.18 11.43 21.65 0.25 -47.93 16
11 Si 0.98 41.90 29.61 68.60 2.03 43.93 16
12 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16
13 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16
14 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16
15 S 2.69 140.29 5.80 -56.49 -0.33 139.97 16
16 O -0.99 -53.94 16.99 -128.00 -2.17 -56.12 16
17 O -1.01 -56.24 16.67 -128.00 -2.13 -58.37 16
18 C -0.56 -25.45 6.63 83.54 0.55 -24.89 16
19 C 0.07 2.65 11.38 83.22 0.95 3.60 16
20 N -0.45 -13.13 3.13 -513.76 -1.61 -14.74 16
21 C 0.20 6.67 7.65 138.23 1.06 7.72 16
22 N -0.46 -19.71 11.24 -185.01 -2.08 -21.79 16
23 C -0.03 -0.71 6.33 30.09 0.19 -0.52 16
24 C -0.12 -1.47 5.96 30.78 0.18 -1.29 16
25 C -0.13 -1.31 5.94 30.74 0.18 -1.13 16
26 C 0.08 1.38 6.98 86.48 0.60 1.98 16
27 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16
28 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16
29 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16
30 H 0.11 5.10 6.97 -2.39 -0.02 5.08 16
31 H 0.14 7.16 5.48 -2.39 -0.01 7.14 16
32 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16
33 H 0.20 6.63 8.06 -2.91 -0.02 6.60 16
34 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16
35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16
36 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16
37 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16
38 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16
39 H 0.08 0.83 8.12 -2.38 -0.02 0.81 16
40 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16
41 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16
Total: -1.00 -81.28 359.92 1.14 -80.14
By element:
Atomic # 1 Polarization: 18.80 SS G_CDS: 1.06 Total: 19.86 kcal
Atomic # 6 Polarization: -7.64 SS G_CDS: 7.14 Total: -0.50 kcal
Atomic # 7 Polarization: -125.25 SS G_CDS: -4.26 Total: -129.51 kcal
Atomic # 8 Polarization: -149.38 SS G_CDS: -4.51 Total: -153.89 kcal
Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal
Atomic # 16 Polarization: 140.29 SS G_CDS: -0.33 Total: 139.97 kcal
Total: -81.28 1.14 -80.14 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000355620316.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.627 kcal
(2) G-P(sol) polarization free energy of solvation -81.283 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.145 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.772 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds