Wall clock time and date at job start Sat Apr 11 2020 06:48:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35946 * 117.00127 * 2 1
4 4 C 1.38665 * 120.06402 * 0.02562 * 3 2 1
5 5 C 1.38186 * 119.96879 * 179.97438 * 4 3 2
6 6 S 1.76194 * 119.94946 * 179.97438 * 5 4 3
7 7 O 1.42100 * 106.40331 * 203.54035 * 6 5 4
8 8 O 1.42099 * 106.40357 * 336.45981 * 6 5 4
9 9 N 1.65598 * 107.21692 * 90.00321 * 6 5 4
10 10 C 1.46496 * 120.00182 * 64.99867 * 9 6 5
11 11 H 1.08995 * 109.41658 * 335.00142 * 10 9 6
12 12 C 1.52956 * 109.41308 * 94.86000 * 10 9 6
13 13 C 1.53243 * 109.39859 * 183.77245 * 12 10 9
14 14 C 1.51269 * 108.48335 * 305.26683 * 13 12 10
15 15 C 1.37872 * 120.84671 * 231.40891 * 14 13 12
16 16 N 1.31512 * 120.00005 * 164.54785 * 15 14 13
17 17 Si 1.86801 * 120.00199 * 344.54739 * 15 14 13
18 18 H 1.48505 * 109.47123 * 354.63647 * 17 15 14
19 19 H 1.48502 * 109.47049 * 114.63596 * 17 15 14
20 20 H 1.48500 * 109.47233 * 234.63979 * 17 15 14
21 21 C 1.51261 * 118.30114 * 51.38542 * 14 13 12
22 22 C 1.52956 * 109.41086 * 215.13839 * 10 9 6
23 23 C 1.38264 * 120.09310 * 0.27499 * 5 4 3
24 24 C 1.38251 * 120.12863 * 359.45229 * 23 5 4
25 25 C 1.38336 * 120.02720 * 0.54699 * 24 23 5
26 26 F 1.35105 * 120.04552 * 179.75376 * 25 24 23
27 27 H 1.09003 * 109.46864 * 299.99673 * 1 2 3
28 28 H 1.08997 * 109.46898 * 60.00214 * 1 2 3
29 29 H 1.09000 * 109.47290 * 180.02562 * 1 2 3
30 30 H 1.07997 * 120.01360 * 0.02562 * 4 3 2
31 31 H 0.97008 * 119.99438 * 244.99482 * 9 6 5
32 32 H 1.09002 * 109.48564 * 303.68101 * 12 10 9
33 33 H 1.09003 * 109.48603 * 63.72197 * 12 10 9
34 34 H 1.08999 * 109.62072 * 185.58466 * 13 12 10
35 35 H 1.09000 * 109.84146 * 65.07947 * 13 12 10
36 36 H 0.96998 * 120.00394 * 179.97438 * 16 15 14
37 37 H 1.08997 * 109.62824 * 188.93455 * 21 14 13
38 38 H 1.09006 * 109.78283 * 68.46294 * 21 14 13
39 39 H 1.09002 * 109.48866 * 296.27251 * 22 10 9
40 40 H 1.09002 * 109.48312 * 56.30449 * 22 10 9
41 41 H 1.08001 * 119.93058 * 179.70182 * 23 5 4
42 42 H 1.07993 * 119.98644 * 180.25474 * 24 23 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0462 1.2113 0.0000
4 6 1.2923 2.3751 0.0005
5 6 1.9218 3.6053 0.0011
6 16 0.9633 5.0837 0.0011
7 8 1.7939 6.1004 -0.5428
8 8 -0.3034 4.7408 -0.5439
9 7 0.6962 5.4947 1.5828
10 6 1.8214 5.8721 2.4417
11 1 2.7368 5.4216 2.0584
12 6 1.9679 7.3946 2.4478
13 6 3.2012 7.7840 3.2698
14 6 3.0761 7.1656 4.6446
15 6 3.2254 7.9321 5.7808
16 7 2.8222 7.4694 6.9439
17 14 4.0005 9.6280 5.6682
18 1 4.4837 9.8605 4.2834
19 1 2.9904 10.6582 6.0196
20 1 5.1438 9.7134 6.6122
21 6 2.7824 5.6849 4.7409
22 6 1.5653 5.3716 3.8642
23 6 3.3025 3.6775 -0.0047
24 6 4.0580 2.5198 0.0005
25 6 3.4333 1.2855 -0.0001
26 9 4.1713 0.1538 -0.0001
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 0.2138 2.3200 0.0014
31 1 -0.2054 5.4855 1.9407
32 1 2.0860 7.7527 1.4251
33 1 1.0785 7.8437 2.8899
34 1 3.2535 8.8690 3.3597
35 1 4.1029 7.4132 2.7822
36 1 2.9275 8.0084 7.7434
37 1 2.5656 5.4211 5.7760
38 1 3.6427 5.1145 4.3903
39 1 0.6857 5.8696 4.2721
40 1 1.3977 4.2947 3.8460
41 1 3.7917 4.6404 -0.0091
42 1 5.1364 2.5789 0.0001
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001200592906.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:15
Heat of formation + Delta-G solvation = -139.886271 kcal
Electronic energy + Delta-G solvation = -28570.444831 eV
Core-core repulsion = 24364.012884 eV
Total energy + Delta-G solvation = -4206.431946 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.109 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-49.18980 -40.33112 -37.87221 -37.59714 -37.04065 -35.79942 -33.76436 -31.35545
-31.29533 -30.63829 -29.67583 -27.73770 -26.94678 -23.53358 -22.98603 -22.15402
-21.55385 -19.94909 -19.48308 -18.74801 -17.74042 -17.34442 -17.27157 -16.54626
-16.50619 -16.11288 -15.70718 -15.40247 -14.92298 -14.71614 -14.55849 -14.41760
-13.60473 -13.34630 -13.30371 -12.99989 -12.87519 -12.61437 -12.42148 -12.21361
-12.16959 -12.08648 -12.00032 -11.78315 -11.64572 -11.38404 -11.24487 -10.97839
-10.97308 -10.65654 -10.21598 -9.97824 -9.80204 -9.51889 -9.29745 -8.98468
-8.68820 -8.60408 -8.36979 -6.18448 -4.03659 0.22753 0.53285 0.85979
2.73957 2.85438 3.19899 3.24790 3.35215 3.38670 3.74761 3.80389
4.17521 4.35879 4.39860 4.63629 4.75417 4.83627 4.93985 5.07888
5.08592 5.16332 5.26861 5.29386 5.47802 5.67068 5.74850 5.77493
5.92547 6.01303 6.19112 6.47417 6.56536 6.69629 6.83703 6.85017
6.94052 7.01216 7.11771 7.26575 7.39381 7.60391 7.65634 7.76620
8.32434 8.91194 9.49923 10.91205
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.014736 B = 0.003467 C = 0.003216
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1899.667043 B = 8075.145996 C = 8704.904958
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 O -0.308 6.308
3 C 0.073 3.927
4 C -0.082 4.082
5 C -0.649 4.649
6 S 2.692 3.308
7 O -0.948 6.948
8 O -0.969 6.969
9 N -1.109 6.109
10 C 0.162 3.838
11 H 0.072 0.928
12 C -0.123 4.123
13 C -0.015 4.015
14 C -0.496 4.496
15 C 0.081 3.919
16 N -0.882 5.882
17 Si 0.879 3.121
18 H -0.260 1.260
19 H -0.283 1.283
20 H -0.286 1.286
21 C 0.011 3.989
22 C -0.111 4.111
23 C -0.023 4.023
24 C -0.135 4.135
25 C 0.124 3.876
26 F -0.124 7.124
27 H 0.062 0.938
28 H 0.061 0.939
29 H 0.106 0.894
30 H 0.154 0.846
31 H 0.416 0.584
32 H 0.049 0.951
33 H 0.058 0.942
34 H 0.036 0.964
35 H 0.017 0.983
36 H 0.264 0.736
37 H 0.059 0.941
38 H 0.004 0.996
39 H 0.059 0.941
40 H 0.034 0.966
41 H 0.156 0.844
42 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.569 -11.520 -13.008 17.738
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 O -0.222 6.222
3 C 0.027 3.973
4 C -0.102 4.102
5 C -0.734 4.734
6 S 2.780 3.220
7 O -0.938 6.938
8 O -0.959 6.959
9 N -0.869 5.869
10 C 0.057 3.943
11 H 0.090 0.910
12 C -0.163 4.163
13 C -0.053 4.053
14 C -0.514 4.514
15 C -0.123 4.123
16 N -0.519 5.519
17 Si 0.706 3.294
18 H -0.184 1.184
19 H -0.210 1.210
20 H -0.212 1.212
21 C -0.027 4.027
22 C -0.151 4.151
23 C -0.042 4.042
24 C -0.154 4.154
25 C 0.103 3.897
26 F -0.103 7.103
27 H 0.080 0.920
28 H 0.080 0.920
29 H 0.124 0.876
30 H 0.171 0.829
31 H 0.250 0.750
32 H 0.068 0.932
33 H 0.077 0.923
34 H 0.054 0.946
35 H 0.035 0.965
36 H 0.074 0.926
37 H 0.077 0.923
38 H 0.022 0.978
39 H 0.078 0.922
40 H 0.053 0.947
41 H 0.174 0.826
42 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -3.578 -11.307 -13.630 18.067
hybrid contribution 0.254 0.113 0.620 0.679
sum -3.324 -11.194 -13.010 17.482
Atomic orbital electron populations
1.23230 0.77450 1.04683 1.02103 1.86137 1.22106 1.25079 1.88877
1.18973 0.90921 0.85866 1.01582 1.20837 1.00660 0.89967 0.98758
1.31079 1.07913 1.18865 1.15504 1.02012 0.73328 0.73657 0.73032
1.93611 1.69613 1.53906 1.76685 1.93557 1.40486 1.84818 1.77070
1.55702 1.17082 1.83452 1.30675 1.20905 0.85358 0.96599 0.91391
0.90984 1.22071 1.01246 0.93704 0.99237 1.19751 0.92939 0.97151
0.95455 1.19994 1.48258 0.93780 0.89401 1.24811 0.94582 0.97863
0.95027 1.69905 1.44213 1.38578 0.99219 0.86783 0.79688 0.84451
0.78459 1.18427 1.20957 1.21219 1.19378 0.91140 0.95263 0.96903
1.21932 1.02322 0.97269 0.93556 1.20843 0.91357 0.99596 0.92450
1.21190 1.01792 0.89879 1.02575 1.17236 0.86032 0.83145 1.03243
1.91540 1.76306 1.48955 1.93474 0.91962 0.91992 0.87557 0.82899
0.74956 0.93238 0.92315 0.94595 0.96502 0.92619 0.92262 0.97756
0.92221 0.94696 0.82598 0.82771
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.15 9.81 101.05 0.99 1.14 16
2 O -0.31 -3.54 10.36 -19.57 -0.20 -3.74 16
3 C 0.07 0.91 6.69 -39.18 -0.26 0.64 16
4 C -0.08 -0.98 8.51 -39.44 -0.34 -1.32 16
5 C -0.65 -8.29 5.81 -39.59 -0.23 -8.52 16
6 S 2.69 37.74 5.65 -107.50 -0.61 37.14 16
7 O -0.95 -15.68 16.47 -57.17 -0.94 -16.62 16
8 O -0.97 -14.72 17.28 -57.17 -0.99 -15.71 16
9 N -1.11 -15.57 5.47 -4.93 -0.03 -15.60 16
10 C 0.16 2.79 2.55 -67.98 -0.17 2.62 16
11 H 0.07 1.18 7.24 -51.93 -0.38 0.81 16
12 C -0.12 -2.37 5.54 -26.63 -0.15 -2.52 16
13 C -0.01 -0.32 5.47 -27.48 -0.15 -0.47 16
14 C -0.50 -12.26 5.44 -98.93 -0.54 -12.80 16
15 C 0.08 2.11 5.43 -17.82 -0.10 2.01 16
16 N -0.88 -24.29 12.81 55.43 0.71 -23.58 16
17 Si 0.88 20.17 27.63 -169.99 -4.70 15.47 16
18 H -0.26 -5.76 6.14 56.52 0.35 -5.41 16
19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16
21 C 0.01 0.26 5.99 -27.49 -0.16 0.10 16
22 C -0.11 -2.10 5.46 -26.63 -0.15 -2.25 16
23 C -0.02 -0.28 8.91 -39.57 -0.35 -0.63 16
24 C -0.13 -1.50 10.02 -39.54 -0.40 -1.90 16
25 C 0.12 1.53 7.31 -39.30 -0.29 1.25 16
26 F -0.12 -1.59 17.11 2.25 0.04 -1.56 16
27 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16
28 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16
29 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16
30 H 0.15 1.53 5.86 -52.49 -0.31 1.23 16
31 H 0.42 5.00 8.84 -34.47 -0.30 4.70 16
32 H 0.05 0.91 7.57 -51.93 -0.39 0.52 16
33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
34 H 0.04 0.80 5.02 -51.93 -0.26 0.54 16
35 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16
36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16
37 H 0.06 1.51 7.11 -51.93 -0.37 1.14 16
38 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16
39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16
41 H 0.16 1.73 7.60 -52.49 -0.40 1.33 16
42 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16
LS Contribution 355.86 15.07 5.36 5.36
Total: -1.00 -31.14 355.86 -9.00 -40.14
By element:
Atomic # 1 Polarization: 6.71 SS G_CDS: -5.35 Total: 1.35 kcal
Atomic # 6 Polarization: -20.37 SS G_CDS: -2.29 Total: -22.66 kcal
Atomic # 7 Polarization: -39.86 SS G_CDS: 0.68 Total: -39.18 kcal
Atomic # 8 Polarization: -33.93 SS G_CDS: -2.13 Total: -36.07 kcal
Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal
Atomic # 14 Polarization: 20.17 SS G_CDS: -4.70 Total: 15.47 kcal
Atomic # 16 Polarization: 37.74 SS G_CDS: -0.61 Total: 37.14 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -31.14 -9.00 -40.14 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001200592906.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -99.748 kcal
(2) G-P(sol) polarization free energy of solvation -31.143 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.891 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.886 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds