Wall clock time and date at job start Sat Apr 11 2020 06:48:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35946 * 117.00127 * 2 1
4 4 C 1.38665 * 120.06402 * 0.02562 * 3 2 1
5 5 C 1.38186 * 119.96879 * 179.97438 * 4 3 2
6 6 S 1.76194 * 119.94946 * 179.97438 * 5 4 3
7 7 O 1.42100 * 106.40331 * 203.54035 * 6 5 4
8 8 O 1.42099 * 106.40357 * 336.45981 * 6 5 4
9 9 N 1.65598 * 107.21692 * 90.00321 * 6 5 4
10 10 C 1.46496 * 120.00182 * 64.99867 * 9 6 5
11 11 H 1.08995 * 109.41658 * 335.00142 * 10 9 6
12 12 C 1.52956 * 109.41308 * 94.86000 * 10 9 6
13 13 C 1.53243 * 109.39859 * 183.77245 * 12 10 9
14 14 C 1.51269 * 108.48335 * 305.26683 * 13 12 10
15 15 C 1.37872 * 120.84671 * 231.40891 * 14 13 12
16 16 N 1.31512 * 120.00005 * 164.54785 * 15 14 13
17 17 Si 1.86801 * 120.00199 * 344.54739 * 15 14 13
18 18 H 1.48505 * 109.47123 * 354.63647 * 17 15 14
19 19 H 1.48502 * 109.47049 * 114.63596 * 17 15 14
20 20 H 1.48500 * 109.47233 * 234.63979 * 17 15 14
21 21 C 1.51261 * 118.30114 * 51.38542 * 14 13 12
22 22 C 1.52956 * 109.41086 * 215.13839 * 10 9 6
23 23 C 1.38264 * 120.09310 * 0.27499 * 5 4 3
24 24 C 1.38251 * 120.12863 * 359.45229 * 23 5 4
25 25 C 1.38336 * 120.02720 * 0.54699 * 24 23 5
26 26 F 1.35105 * 120.04552 * 179.75376 * 25 24 23
27 27 H 1.09003 * 109.46864 * 299.99673 * 1 2 3
28 28 H 1.08997 * 109.46898 * 60.00214 * 1 2 3
29 29 H 1.09000 * 109.47290 * 180.02562 * 1 2 3
30 30 H 1.07997 * 120.01360 * 0.02562 * 4 3 2
31 31 H 0.97008 * 119.99438 * 244.99482 * 9 6 5
32 32 H 1.09002 * 109.48564 * 303.68101 * 12 10 9
33 33 H 1.09003 * 109.48603 * 63.72197 * 12 10 9
34 34 H 1.08999 * 109.62072 * 185.58466 * 13 12 10
35 35 H 1.09000 * 109.84146 * 65.07947 * 13 12 10
36 36 H 0.96998 * 120.00394 * 179.97438 * 16 15 14
37 37 H 1.08997 * 109.62824 * 188.93455 * 21 14 13
38 38 H 1.09006 * 109.78283 * 68.46294 * 21 14 13
39 39 H 1.09002 * 109.48866 * 296.27251 * 22 10 9
40 40 H 1.09002 * 109.48312 * 56.30449 * 22 10 9
41 41 H 1.08001 * 119.93058 * 179.70182 * 23 5 4
42 42 H 1.07993 * 119.98644 * 180.25474 * 24 23 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0462 1.2113 0.0000
4 6 1.2923 2.3751 0.0005
5 6 1.9218 3.6053 0.0011
6 16 0.9633 5.0837 0.0011
7 8 1.7939 6.1004 -0.5428
8 8 -0.3034 4.7408 -0.5439
9 7 0.6962 5.4947 1.5828
10 6 1.8214 5.8721 2.4417
11 1 2.7368 5.4216 2.0584
12 6 1.9679 7.3946 2.4478
13 6 3.2012 7.7840 3.2698
14 6 3.0761 7.1656 4.6446
15 6 3.2254 7.9321 5.7808
16 7 2.8222 7.4694 6.9439
17 14 4.0005 9.6280 5.6682
18 1 4.4837 9.8605 4.2834
19 1 2.9904 10.6582 6.0196
20 1 5.1438 9.7134 6.6122
21 6 2.7824 5.6849 4.7409
22 6 1.5653 5.3716 3.8642
23 6 3.3025 3.6775 -0.0047
24 6 4.0580 2.5198 0.0005
25 6 3.4333 1.2855 -0.0001
26 9 4.1713 0.1538 -0.0001
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 0.2138 2.3200 0.0014
31 1 -0.2054 5.4855 1.9407
32 1 2.0860 7.7527 1.4251
33 1 1.0785 7.8437 2.8899
34 1 3.2535 8.8690 3.3597
35 1 4.1029 7.4132 2.7822
36 1 2.9275 8.0084 7.7434
37 1 2.5656 5.4211 5.7760
38 1 3.6427 5.1145 4.3903
39 1 0.6857 5.8696 4.2721
40 1 1.3977 4.2947 3.8460
41 1 3.7917 4.6404 -0.0091
42 1 5.1364 2.5789 0.0001
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001200592906.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:14
Heat of formation + Delta-G solvation = -161.041805 kcal
Electronic energy + Delta-G solvation = -28571.362204 eV
Core-core repulsion = 24364.012884 eV
Total energy + Delta-G solvation = -4207.349319 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.109 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-50.13112 -41.17364 -39.17450 -38.62716 -38.26881 -36.99110 -35.39015 -33.02748
-32.23133 -31.49275 -31.34888 -28.61693 -28.39769 -24.46334 -23.93298 -23.77213
-23.21207 -21.30257 -20.73601 -19.75938 -18.83268 -18.42378 -18.24542 -17.81111
-17.42676 -17.34313 -17.02959 -16.30167 -16.22309 -15.94029 -15.71185 -15.40774
-14.97910 -14.66112 -14.49807 -14.18983 -14.17812 -14.02002 -13.91909 -13.74030
-13.29170 -13.19589 -12.99018 -12.88305 -12.82298 -12.72868 -12.66321 -12.39704
-12.33343 -11.99002 -11.79155 -11.70392 -11.44208 -10.95527 -10.70021 -10.42973
-10.40305 -10.07216 -9.56818 -8.14619 -6.01238 -0.78696 -0.51047 -0.02040
1.40678 1.48274 1.56604 1.84118 2.00058 2.17333 2.46652 2.67815
2.90342 3.13694 3.20199 3.48504 3.79915 3.90178 3.95228 4.20854
4.26845 4.29674 4.31729 4.41519 4.47981 4.53872 4.60664 4.68741
4.80484 4.84595 4.85618 5.05162 5.08401 5.16481 5.32203 5.35599
5.39686 5.51791 5.68493 5.74088 5.82661 5.91629 6.05388 6.16592
6.41920 7.03081 7.53981 8.96406
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.014736 B = 0.003467 C = 0.003216
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1899.667043 B = 8075.145996 C = 8704.904958
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.008 3.992
2 O -0.324 6.324
3 C 0.069 3.931
4 C -0.086 4.086
5 C -0.653 4.653
6 S 2.712 3.288
7 O -0.972 6.972
8 O -0.979 6.979
9 N -1.102 6.102
10 C 0.171 3.829
11 H 0.085 0.915
12 C -0.122 4.122
13 C -0.020 4.020
14 C -0.500 4.500
15 C 0.028 3.972
16 N -0.924 5.924
17 Si 0.926 3.074
18 H -0.245 1.245
19 H -0.286 1.286
20 H -0.290 1.290
21 C 0.005 3.995
22 C -0.102 4.102
23 C -0.034 4.034
24 C -0.128 4.128
25 C 0.108 3.892
26 F -0.130 7.130
27 H 0.070 0.930
28 H 0.071 0.929
29 H 0.129 0.871
30 H 0.170 0.830
31 H 0.426 0.574
32 H 0.061 0.939
33 H 0.053 0.947
34 H 0.032 0.968
35 H 0.026 0.974
36 H 0.261 0.739
37 H 0.026 0.974
38 H 0.010 0.990
39 H 0.049 0.951
40 H 0.058 0.942
41 H 0.166 0.834
42 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.745 -12.069 -14.779 19.445
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.086 4.086
2 O -0.238 6.238
3 C 0.021 3.979
4 C -0.106 4.106
5 C -0.740 4.740
6 S 2.802 3.198
7 O -0.962 6.962
8 O -0.970 6.970
9 N -0.863 5.863
10 C 0.065 3.935
11 H 0.103 0.897
12 C -0.162 4.162
13 C -0.058 4.058
14 C -0.519 4.519
15 C -0.171 4.171
16 N -0.564 5.564
17 Si 0.753 3.247
18 H -0.168 1.168
19 H -0.213 1.213
20 H -0.217 1.217
21 C -0.033 4.033
22 C -0.141 4.141
23 C -0.053 4.053
24 C -0.147 4.147
25 C 0.088 3.912
26 F -0.109 7.109
27 H 0.088 0.912
28 H 0.089 0.911
29 H 0.147 0.853
30 H 0.187 0.813
31 H 0.262 0.738
32 H 0.080 0.920
33 H 0.071 0.929
34 H 0.050 0.950
35 H 0.045 0.955
36 H 0.070 0.930
37 H 0.044 0.956
38 H 0.028 0.972
39 H 0.068 0.932
40 H 0.077 0.923
41 H 0.183 0.817
42 H 0.197 0.803
Dipole moment (debyes) X Y Z Total
from point charges -3.783 -11.836 -15.422 19.805
hybrid contribution 0.289 0.150 1.117 1.164
sum -3.494 -11.687 -14.305 18.799
Atomic orbital electron populations
1.23568 0.75519 1.06579 1.02934 1.86130 1.24179 1.24800 1.88701
1.19114 0.91117 0.86350 1.01290 1.21012 1.01542 0.89514 0.98494
1.30847 1.08149 1.18260 1.16740 1.01233 0.72767 0.73451 0.72357
1.93580 1.70097 1.55446 1.77119 1.93543 1.41277 1.85033 1.77098
1.55444 1.16950 1.83577 1.30319 1.20617 0.86856 0.95208 0.90822
0.89696 1.22015 0.99602 0.95337 0.99238 1.19805 0.94716 0.96835
0.94459 1.20606 1.46122 0.94678 0.90477 1.25503 0.95606 1.00954
0.95050 1.70024 1.46605 1.39928 0.99834 0.86015 0.78679 0.81141
0.78909 1.16846 1.21257 1.21706 1.19364 0.93178 0.94726 0.96025
1.21731 0.99767 0.98817 0.93823 1.21056 0.91247 1.00384 0.92604
1.21449 1.03079 0.89026 1.01188 1.17522 0.86385 0.83437 1.03858
1.91522 1.76428 1.49314 1.93591 0.91165 0.91072 0.85303 0.81306
0.73760 0.91992 0.92852 0.94986 0.95534 0.92993 0.95550 0.97209
0.93248 0.92289 0.81653 0.80288
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.10 9.81 113.37 1.11 1.21 16
2 O -0.32 -6.88 10.36 -92.94 -0.96 -7.84 16
3 C 0.07 1.56 6.69 22.53 0.15 1.71 16
4 C -0.09 -1.85 8.51 22.36 0.19 -1.66 16
5 C -0.65 -15.13 5.81 22.26 0.13 -15.00 16
6 S 2.71 69.61 5.65 -56.49 -0.32 69.29 16
7 O -0.97 -29.94 16.47 -128.00 -2.11 -32.05 16
8 O -0.98 -27.45 17.28 -128.00 -2.21 -29.66 16
9 N -1.10 -28.20 5.47 -169.52 -0.93 -29.13 16
10 C 0.17 5.47 2.55 44.96 0.11 5.59 16
11 H 0.09 2.54 7.24 -2.39 -0.02 2.52 16
12 C -0.12 -4.47 5.54 30.66 0.17 -4.30 16
13 C -0.02 -0.84 5.47 30.11 0.16 -0.68 16
14 C -0.50 -24.54 5.44 -16.18 -0.09 -24.63 16
15 C 0.03 1.46 5.43 84.65 0.46 1.92 16
16 N -0.92 -52.21 12.81 21.45 0.27 -51.94 16
17 Si 0.93 41.49 27.63 68.60 1.90 43.38 16
18 H -0.24 -10.25 6.14 99.48 0.61 -9.64 16
19 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16
20 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16
21 C 0.01 0.24 5.99 30.10 0.18 0.43 16
22 C -0.10 -3.70 5.46 30.66 0.17 -3.53 16
23 C -0.03 -0.73 8.91 22.28 0.20 -0.53 16
24 C -0.13 -2.56 10.02 22.30 0.22 -2.34 16
25 C 0.11 2.50 7.31 22.45 0.16 2.66 16
26 F -0.13 -3.17 17.11 44.97 0.77 -2.40 16
27 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16
28 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16
29 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16
30 H 0.17 2.96 5.86 -2.91 -0.02 2.94 16
31 H 0.43 9.19 8.84 -96.74 -0.85 8.34 16
32 H 0.06 2.12 7.57 -2.39 -0.02 2.11 16
33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16
34 H 0.03 1.36 5.02 -2.39 -0.01 1.35 16
35 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16
36 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16
37 H 0.03 1.35 7.11 -2.39 -0.02 1.34 16
38 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16
39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16
40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16
41 H 0.17 3.23 7.60 -2.91 -0.02 3.21 16
42 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16
Total: -1.00 -66.25 355.86 -0.13 -66.38
By element:
Atomic # 1 Polarization: 12.99 SS G_CDS: 0.12 Total: 13.11 kcal
Atomic # 6 Polarization: -42.49 SS G_CDS: 3.34 Total: -39.15 kcal
Atomic # 7 Polarization: -80.41 SS G_CDS: -0.65 Total: -81.06 kcal
Atomic # 8 Polarization: -64.26 SS G_CDS: -5.28 Total: -69.55 kcal
Atomic # 9 Polarization: -3.17 SS G_CDS: 0.77 Total: -2.40 kcal
Atomic # 14 Polarization: 41.49 SS G_CDS: 1.90 Total: 43.38 kcal
Atomic # 16 Polarization: 69.61 SS G_CDS: -0.32 Total: 69.29 kcal
Total: -66.25 -0.13 -66.38 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001200592906.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -94.665 kcal
(2) G-P(sol) polarization free energy of solvation -66.245 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal
(6) G-S(sol) free energy of system = (1) + (5) -161.042 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds