Wall clock time and date at job start Sat Apr 11 2020 06:48:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.42900 * 114.00225 * 2 1
4 4 C 1.52999 * 109.47268 * 180.02562 * 3 2 1
5 5 N 1.46494 * 109.47197 * 65.00269 * 4 3 2
6 6 C 1.46500 * 119.99913 * 264.71767 * 5 4 3
7 7 C 1.50694 * 109.47509 * 274.07576 * 6 5 4
8 8 H 1.08002 * 119.99798 * 0.02562 * 7 6 5
9 9 C 1.37872 * 120.00284 * 179.97438 * 7 6 5
10 10 N 1.31518 * 120.00155 * 0.02562 * 9 7 6
11 11 Si 1.86797 * 120.00283 * 179.97438 * 9 7 6
12 12 H 1.48509 * 109.47214 * 60.00174 * 11 9 7
13 13 H 1.48502 * 109.47306 * 180.02562 * 11 9 7
14 14 H 1.48498 * 109.47220 * 300.00144 * 11 9 7
15 15 C 1.34777 * 120.00191 * 84.72239 * 5 4 3
16 16 O 1.21514 * 120.00101 * 3.17268 * 15 5 4
17 17 C 1.48145 * 119.99970 * 183.17721 * 15 5 4
18 18 C 1.39838 * 120.92321 * 311.02071 * 17 15 5
19 19 C 1.38129 * 118.99937 * 179.97438 * 18 17 15
20 20 N 1.31823 * 120.90020 * 359.97438 * 19 18 17
21 21 C 1.31796 * 122.05120 * 0.02562 * 20 19 18
22 22 S 1.76200 * 119.55282 * 179.97438 * 21 20 19
23 23 N 1.65599 * 107.21648 * 90.00055 * 22 21 20
24 24 O 1.42100 * 106.40253 * 336.46478 * 22 21 20
25 25 O 1.42097 * 106.40093 * 203.54202 * 22 21 20
26 26 C 1.38168 * 120.89103 * 0.27719 * 21 20 19
27 27 H 1.09004 * 109.46943 * 59.99955 * 1 2 3
28 28 H 1.08996 * 109.47430 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47434 * 300.00040 * 1 2 3
30 30 H 1.09001 * 109.47176 * 59.99914 * 3 2 1
31 31 H 1.09000 * 109.47418 * 300.00511 * 3 2 1
32 32 H 1.08999 * 109.46897 * 304.99592 * 4 3 2
33 33 H 1.08998 * 109.46795 * 185.00608 * 4 3 2
34 34 H 1.09003 * 109.47358 * 34.08010 * 6 5 4
35 35 H 1.09001 * 109.47415 * 154.07288 * 6 5 4
36 36 H 0.97001 * 120.00331 * 179.97438 * 10 9 7
37 37 H 1.07993 * 120.50204 * 0.02562 * 18 17 15
38 38 H 1.08011 * 119.54809 * 180.02562 * 19 18 17
39 39 H 0.96997 * 120.00155 * 239.99990 * 23 22 21
40 40 H 0.97000 * 119.99923 * 59.72998 * 23 22 21
41 41 H 1.08009 * 120.49513 * 179.70174 * 26 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1846 -0.0006
5 7 3.9757 0.5644 -1.2527
6 6 4.2166 -0.8795 -1.3098
7 6 5.6253 -1.1718 -0.8613
8 1 6.2759 -0.3630 -0.5631
9 6 6.0832 -2.4719 -0.8307
10 7 5.2908 -3.4570 -1.1933
11 14 7.8295 -2.8343 -0.2754
12 1 8.0153 -2.3556 1.1181
13 1 8.0737 -4.2980 -0.3332
14 1 8.7881 -2.1374 -1.1702
15 6 4.1590 1.3222 -2.3521
16 8 4.0152 2.5273 -2.2903
17 6 4.5359 0.6861 -3.6358
18 6 5.5858 -0.2353 -3.7003
19 6 5.9031 -0.8048 -4.9181
20 7 5.2313 -0.4907 -6.0079
21 6 4.2353 0.3723 -5.9912
22 16 3.3826 0.7444 -7.4875
23 7 2.1293 -0.3302 -7.6176
24 8 4.2807 0.4432 -8.5468
25 8 2.7955 2.0257 -7.3069
26 6 3.8550 0.9940 -4.8174
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3634 0.5138 0.8900
30 1 1.6886 1.8464 0.8900
31 1 1.6886 1.8464 -0.8899
32 1 3.8514 0.5682 0.8410
33 1 3.9785 2.1764 0.0890
34 1 3.5128 -1.3916 -0.6537
35 1 4.0808 -1.2304 -2.3328
36 1 5.6131 -4.3716 -1.1721
37 1 6.1397 -0.4982 -2.8113
38 1 6.7122 -1.5179 -4.9780
39 1 2.0802 -0.9281 -8.3797
40 1 1.4463 -0.3643 -6.9296
41 1 3.0410 1.7039 -4.8119
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001362023974.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:12
Heat of formation + Delta-G solvation = -112.695879 kcal
Electronic energy + Delta-G solvation = -28638.002675 eV
Core-core repulsion = 24452.669754 eV
Total energy + Delta-G solvation = -4185.332921 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.108 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.40518 -38.86408 -37.48155 -37.18473 -35.86092 -35.25905 -33.30870 -32.99629
-32.51171 -31.37796 -29.80541 -27.37826 -26.20862 -24.67633 -23.77984 -23.10948
-22.43434 -20.17157 -19.20898 -17.79967 -17.51215 -17.16528 -16.79551 -16.61297
-16.29965 -16.03229 -15.73764 -15.60256 -15.20481 -14.76969 -14.73548 -14.49559
-14.09527 -14.06805 -13.60329 -13.08211 -12.56360 -12.45611 -12.25187 -12.10338
-12.09004 -12.00540 -11.90907 -11.66784 -11.51707 -11.19278 -11.15484 -11.00644
-10.75328 -10.62901 -10.41695 -10.01212 -9.87980 -9.63306 -9.50653 -9.29148
-9.11238 -8.72628 -7.97929 -6.37368 -4.47363 0.34324 0.82806 1.10111
2.96121 3.11038 3.16969 3.18686 3.21152 3.46972 3.60664 3.93919
4.02340 4.15256 4.24892 4.83941 4.87858 4.91989 5.14642 5.19936
5.26600 5.34977 5.46627 5.52843 5.55935 5.58212 5.73358 5.74535
5.84856 5.86247 6.00300 6.20131 6.39589 6.55668 6.75090 6.96011
7.07274 7.31287 7.35513 7.56888 7.76284 7.84333 8.05917 8.51966
8.68751 9.19688 10.67831
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.009167 B = 0.004596 C = 0.003506
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3053.696176 B = 6090.621028 C = 7984.415822
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.377 6.377
3 C 0.046 3.954
4 C 0.123 3.877
5 N -0.575 5.575
6 C 0.232 3.768
7 C -0.553 4.553
8 H 0.065 0.935
9 C 0.072 3.928
10 N -0.877 5.877
11 Si 0.894 3.106
12 H -0.274 1.274
13 H -0.284 1.284
14 H -0.273 1.273
15 C 0.555 3.445
16 O -0.560 6.560
17 C -0.091 4.091
18 C -0.058 4.058
19 C 0.074 3.926
20 N -0.384 5.384
21 C -0.471 4.471
22 S 2.718 3.282
23 N -1.241 6.241
24 O -0.944 6.944
25 O -0.954 6.954
26 C -0.048 4.048
27 H 0.036 0.964
28 H 0.083 0.917
29 H 0.036 0.964
30 H 0.053 0.947
31 H 0.050 0.950
32 H 0.094 0.906
33 H 0.089 0.911
34 H 0.051 0.949
35 H 0.037 0.963
36 H 0.269 0.731
37 H 0.189 0.811
38 H 0.171 0.829
39 H 0.422 0.578
40 H 0.418 0.582
41 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.626 3.280 -4.120 9.268
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.296 6.296
3 C -0.032 4.032
4 C -0.001 4.001
5 N -0.303 5.303
6 C 0.112 3.888
7 C -0.591 4.591
8 H 0.083 0.917
9 C -0.134 4.134
10 N -0.513 5.513
11 Si 0.721 3.279
12 H -0.199 1.199
13 H -0.209 1.209
14 H -0.198 1.198
15 C 0.342 3.658
16 O -0.440 6.440
17 C -0.103 4.103
18 C -0.078 4.078
19 C -0.087 4.087
20 N -0.094 5.094
21 C -0.690 4.690
22 S 2.801 3.199
23 N -0.914 5.914
24 O -0.933 6.933
25 O -0.943 6.943
26 C -0.070 4.070
27 H 0.054 0.946
28 H 0.102 0.898
29 H 0.054 0.946
30 H 0.071 0.929
31 H 0.068 0.932
32 H 0.113 0.887
33 H 0.107 0.893
34 H 0.069 0.931
35 H 0.055 0.945
36 H 0.079 0.921
37 H 0.206 0.794
38 H 0.188 0.812
39 H 0.252 0.748
40 H 0.246 0.754
41 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -7.040 3.913 -5.447 9.723
hybrid contribution 0.331 -0.582 2.017 2.125
sum -6.709 3.331 -3.430 8.238
Atomic orbital electron populations
1.22690 0.81972 1.02445 0.99322 1.88034 1.18831 1.27461 1.95248
1.23025 0.95042 0.84982 1.00113 1.21402 0.91228 0.99786 0.87658
1.48104 1.62755 1.11249 1.08232 1.19676 0.97068 0.73051 0.98959
1.21438 0.97838 0.92924 1.46916 0.91731 1.24962 0.98020 0.95882
0.94531 1.69920 1.36001 1.00030 1.45378 0.86613 0.84015 0.77553
0.79748 1.19929 1.20935 1.19785 1.18126 0.77741 0.86210 0.83751
1.90719 1.53802 1.13925 1.85600 1.20399 0.97741 0.97800 0.94321
1.23873 0.93749 0.88359 1.01820 1.23064 0.99129 0.98898 0.87624
1.67538 1.02115 1.08484 1.31289 1.33242 1.09709 1.07393 1.18645
1.01431 0.72678 0.73055 0.72737 1.53223 1.42816 1.59372 1.35968
1.93589 1.63519 1.84243 1.51997 1.93644 1.77092 1.37330 1.86222
1.21898 0.98330 0.95590 0.91181 0.94581 0.89835 0.94566 0.92854
0.93221 0.88749 0.89300 0.93054 0.94485 0.92096 0.79442 0.81185
0.74752 0.75413 0.83006
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.40 11.01 101.05 1.11 1.51 16
2 O -0.38 -6.23 10.04 -35.23 -0.35 -6.58 16
3 C 0.05 0.70 6.24 37.16 0.23 0.93 16
4 C 0.12 2.09 5.79 -4.05 -0.02 2.06 16
5 N -0.57 -11.35 2.41 -176.07 -0.43 -11.77 16
6 C 0.23 5.11 4.59 -5.20 -0.02 5.09 16
7 C -0.55 -12.82 6.66 -34.44 -0.23 -13.04 16
8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16
9 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16
10 N -0.88 -22.14 13.29 55.43 0.74 -21.41 16
11 Si 0.89 18.69 29.54 -169.99 -5.02 13.67 16
12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16
13 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16
14 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16
15 C 0.55 11.20 7.26 -12.19 -0.09 11.12 16
16 O -0.56 -12.09 16.69 5.35 0.09 -12.00 16
17 C -0.09 -1.73 4.89 -104.65 -0.51 -2.24 16
18 C -0.06 -1.08 7.74 -39.02 -0.30 -1.39 16
19 C 0.07 1.27 11.17 -17.60 -0.20 1.08 16
20 N -0.38 -6.62 10.08 -12.50 -0.13 -6.75 16
21 C -0.47 -7.60 6.86 -17.59 -0.12 -7.72 16
22 S 2.72 36.40 6.34 -107.50 -0.68 35.72 16
23 N -1.24 -10.91 9.52 60.35 0.57 -10.34 16
24 O -0.94 -15.24 17.85 -57.17 -1.02 -16.26 16
25 O -0.95 -14.72 17.25 -57.17 -0.99 -15.70 16
26 C -0.05 -0.81 9.29 -39.02 -0.36 -1.17 16
27 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16
28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16
30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.09 1.61 8.03 -51.93 -0.42 1.19 16
33 H 0.09 1.44 7.54 -51.93 -0.39 1.05 16
34 H 0.05 1.24 7.55 -51.93 -0.39 0.85 16
35 H 0.04 0.86 5.69 -51.93 -0.30 0.56 16
36 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16
37 H 0.19 3.74 4.80 -52.49 -0.25 3.49 16
38 H 0.17 2.46 8.06 -52.48 -0.42 2.04 16
39 H 0.42 2.85 8.96 -34.47 -0.31 2.54 16
40 H 0.42 2.86 8.96 -34.47 -0.31 2.55 16
41 H 0.15 2.34 7.60 -52.48 -0.40 1.95 16
LS Contribution 365.33 15.07 5.51 5.51
Total: -1.00 -32.53 365.33 -7.17 -39.70
By element:
Atomic # 1 Polarization: 13.23 SS G_CDS: -4.85 Total: 8.39 kcal
Atomic # 6 Polarization: -1.56 SS G_CDS: -0.61 Total: -2.17 kcal
Atomic # 7 Polarization: -51.02 SS G_CDS: 0.76 Total: -50.26 kcal
Atomic # 8 Polarization: -48.27 SS G_CDS: -2.27 Total: -50.54 kcal
Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal
Atomic # 16 Polarization: 36.40 SS G_CDS: -0.68 Total: 35.72 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -32.53 -7.17 -39.70 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362023974.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -73.000 kcal
(2) G-P(sol) polarization free energy of solvation -32.530 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.530 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.696 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds