Wall clock time and date at job start Sat Apr 11 2020 06:48:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.42900 * 114.00225 * 2 1
4 4 C 1.52999 * 109.47268 * 180.02562 * 3 2 1
5 5 N 1.46494 * 109.47197 * 65.00269 * 4 3 2
6 6 C 1.46500 * 119.99913 * 264.71767 * 5 4 3
7 7 C 1.50694 * 109.47509 * 274.07576 * 6 5 4
8 8 H 1.08002 * 119.99798 * 0.02562 * 7 6 5
9 9 C 1.37872 * 120.00284 * 179.97438 * 7 6 5
10 10 N 1.31518 * 120.00155 * 0.02562 * 9 7 6
11 11 Si 1.86797 * 120.00283 * 179.97438 * 9 7 6
12 12 H 1.48509 * 109.47214 * 60.00174 * 11 9 7
13 13 H 1.48502 * 109.47306 * 180.02562 * 11 9 7
14 14 H 1.48498 * 109.47220 * 300.00144 * 11 9 7
15 15 C 1.34777 * 120.00191 * 84.72239 * 5 4 3
16 16 O 1.21514 * 120.00101 * 3.17268 * 15 5 4
17 17 C 1.48145 * 119.99970 * 183.17721 * 15 5 4
18 18 C 1.39838 * 120.92321 * 311.02071 * 17 15 5
19 19 C 1.38129 * 118.99937 * 179.97438 * 18 17 15
20 20 N 1.31823 * 120.90020 * 359.97438 * 19 18 17
21 21 C 1.31796 * 122.05120 * 0.02562 * 20 19 18
22 22 S 1.76200 * 119.55282 * 179.97438 * 21 20 19
23 23 N 1.65599 * 107.21648 * 90.00055 * 22 21 20
24 24 O 1.42100 * 106.40253 * 336.46478 * 22 21 20
25 25 O 1.42097 * 106.40093 * 203.54202 * 22 21 20
26 26 C 1.38168 * 120.89103 * 0.27719 * 21 20 19
27 27 H 1.09004 * 109.46943 * 59.99955 * 1 2 3
28 28 H 1.08996 * 109.47430 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47434 * 300.00040 * 1 2 3
30 30 H 1.09001 * 109.47176 * 59.99914 * 3 2 1
31 31 H 1.09000 * 109.47418 * 300.00511 * 3 2 1
32 32 H 1.08999 * 109.46897 * 304.99592 * 4 3 2
33 33 H 1.08998 * 109.46795 * 185.00608 * 4 3 2
34 34 H 1.09003 * 109.47358 * 34.08010 * 6 5 4
35 35 H 1.09001 * 109.47415 * 154.07288 * 6 5 4
36 36 H 0.97001 * 120.00331 * 179.97438 * 10 9 7
37 37 H 1.07993 * 120.50204 * 0.02562 * 18 17 15
38 38 H 1.08011 * 119.54809 * 180.02562 * 19 18 17
39 39 H 0.96997 * 120.00155 * 239.99990 * 23 22 21
40 40 H 0.97000 * 119.99923 * 59.72998 * 23 22 21
41 41 H 1.08009 * 120.49513 * 179.70174 * 26 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1846 -0.0006
5 7 3.9757 0.5644 -1.2527
6 6 4.2166 -0.8795 -1.3098
7 6 5.6253 -1.1718 -0.8613
8 1 6.2759 -0.3630 -0.5631
9 6 6.0832 -2.4719 -0.8307
10 7 5.2908 -3.4570 -1.1933
11 14 7.8295 -2.8343 -0.2754
12 1 8.0153 -2.3556 1.1181
13 1 8.0737 -4.2980 -0.3332
14 1 8.7881 -2.1374 -1.1702
15 6 4.1590 1.3222 -2.3521
16 8 4.0152 2.5273 -2.2903
17 6 4.5359 0.6861 -3.6358
18 6 5.5858 -0.2353 -3.7003
19 6 5.9031 -0.8048 -4.9181
20 7 5.2313 -0.4907 -6.0079
21 6 4.2353 0.3723 -5.9912
22 16 3.3826 0.7444 -7.4875
23 7 2.1293 -0.3302 -7.6176
24 8 4.2807 0.4432 -8.5468
25 8 2.7955 2.0257 -7.3069
26 6 3.8550 0.9940 -4.8174
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3634 0.5138 0.8900
30 1 1.6886 1.8464 0.8900
31 1 1.6886 1.8464 -0.8899
32 1 3.8514 0.5682 0.8410
33 1 3.9785 2.1764 0.0890
34 1 3.5128 -1.3916 -0.6537
35 1 4.0808 -1.2304 -2.3328
36 1 5.6131 -4.3716 -1.1721
37 1 6.1397 -0.4982 -2.8113
38 1 6.7122 -1.5179 -4.9780
39 1 2.0802 -0.9281 -8.3797
40 1 1.4463 -0.3643 -6.9296
41 1 3.0410 1.7039 -4.8119
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001362023974.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:11
Heat of formation + Delta-G solvation = -139.477527 kcal
Electronic energy + Delta-G solvation = -28639.164015 eV
Core-core repulsion = 24452.669754 eV
Total energy + Delta-G solvation = -4186.494260 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.108 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.85852 -40.32129 -38.72483 -38.37822 -37.05770 -36.88596 -34.69745 -34.15921
-33.99400 -32.73238 -31.19523 -29.09248 -27.31180 -26.08251 -25.13479 -24.84809
-23.77027 -21.48256 -20.38565 -19.19544 -18.63250 -18.50474 -18.32604 -17.91970
-17.58057 -17.36431 -17.08565 -16.93640 -16.62148 -16.29605 -15.99948 -15.78456
-15.46873 -15.40331 -14.99154 -14.56949 -14.28428 -13.90422 -13.50106 -13.36051
-13.30524 -13.24099 -13.21143 -13.09280 -12.83167 -12.79515 -12.62030 -12.50333
-12.17905 -11.98966 -11.75208 -11.55272 -11.42587 -11.07001 -10.69907 -10.65415
-10.60537 -10.48122 -9.60842 -8.21498 -6.36704 -0.79019 -0.51885 -0.30763
1.44667 1.46538 1.50655 1.54650 1.98952 2.05879 2.32814 2.41284
2.71536 2.90216 2.96624 3.07872 3.40738 3.57603 3.80006 3.90972
4.04073 4.12036 4.19640 4.35903 4.39194 4.49146 4.51725 4.55010
4.62732 4.82918 4.83763 4.90498 4.97987 5.20237 5.25163 5.34259
5.59333 5.73721 6.01266 6.23433 6.32575 6.41176 6.41734 6.73835
7.03158 7.33910 8.83374
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.009167 B = 0.004596 C = 0.003506
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3053.696176 B = 6090.621028 C = 7984.415822
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.411 6.411
3 C 0.053 3.947
4 C 0.115 3.885
5 N -0.575 5.575
6 C 0.252 3.748
7 C -0.551 4.551
8 H 0.061 0.939
9 C 0.036 3.964
10 N -0.907 5.907
11 Si 0.948 3.052
12 H -0.276 1.276
13 H -0.285 1.285
14 H -0.264 1.264
15 C 0.553 3.447
16 O -0.577 6.577
17 C -0.109 4.109
18 C -0.070 4.070
19 C 0.074 3.926
20 N -0.391 5.391
21 C -0.469 4.469
22 S 2.747 3.253
23 N -1.219 6.219
24 O -0.967 6.967
25 O -0.970 6.970
26 C -0.052 4.052
27 H 0.043 0.957
28 H 0.090 0.910
29 H 0.058 0.942
30 H 0.086 0.914
31 H 0.042 0.958
32 H 0.090 0.910
33 H 0.096 0.904
34 H 0.027 0.973
35 H 0.026 0.974
36 H 0.269 0.731
37 H 0.174 0.826
38 H 0.194 0.806
39 H 0.436 0.564
40 H 0.431 0.569
41 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.130 3.377 -4.543 9.906
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.330 6.330
3 C -0.024 4.024
4 C -0.008 4.008
5 N -0.303 5.303
6 C 0.132 3.868
7 C -0.589 4.589
8 H 0.079 0.921
9 C -0.167 4.167
10 N -0.545 5.545
11 Si 0.774 3.226
12 H -0.201 1.201
13 H -0.210 1.210
14 H -0.188 1.188
15 C 0.341 3.659
16 O -0.460 6.460
17 C -0.121 4.121
18 C -0.091 4.091
19 C -0.087 4.087
20 N -0.102 5.102
21 C -0.686 4.686
22 S 2.826 3.174
23 N -0.898 5.898
24 O -0.957 6.957
25 O -0.959 6.959
26 C -0.074 4.074
27 H 0.061 0.939
28 H 0.108 0.892
29 H 0.076 0.924
30 H 0.104 0.896
31 H 0.060 0.940
32 H 0.109 0.891
33 H 0.115 0.885
34 H 0.045 0.955
35 H 0.044 0.956
36 H 0.079 0.921
37 H 0.191 0.809
38 H 0.211 0.789
39 H 0.269 0.731
40 H 0.262 0.738
41 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges -7.543 4.006 -5.833 10.342
hybrid contribution 0.387 -0.600 2.116 2.233
sum -7.156 3.407 -3.716 8.753
Atomic orbital electron populations
1.22885 0.79855 1.03421 1.00730 1.87986 1.21272 1.28230 1.95516
1.22946 0.93376 0.84856 1.01233 1.21613 0.93057 0.99759 0.86322
1.48096 1.62621 1.10393 1.09214 1.19261 0.95931 0.74143 0.97489
1.21537 0.98166 0.92875 1.46360 0.92111 1.25543 1.00936 0.95689
0.94514 1.70012 1.37517 1.00286 1.46668 0.85753 0.80505 0.77172
0.79216 1.20102 1.21043 1.18832 1.18300 0.77394 0.86026 0.84178
1.90694 1.54827 1.14481 1.85952 1.20471 0.98563 0.98504 0.94524
1.23699 0.94135 0.89238 1.01980 1.23406 0.99476 0.98814 0.87009
1.67617 1.02480 1.08899 1.31165 1.33839 1.09180 1.06165 1.19394
1.00592 0.72522 0.72972 0.71277 1.52789 1.41322 1.58932 1.36790
1.93556 1.64952 1.84718 1.52464 1.93625 1.77245 1.38924 1.86115
1.22080 0.98598 0.95881 0.90806 0.93857 0.89186 0.92387 0.89647
0.93976 0.89144 0.88546 0.95507 0.95621 0.92134 0.80904 0.78932
0.73085 0.73841 0.81620
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.63 11.01 113.37 1.25 1.87 16
2 O -0.41 -13.36 10.04 -148.98 -1.50 -14.86 16
3 C 0.05 1.56 6.24 71.98 0.45 2.01 16
4 C 0.11 3.91 5.79 86.38 0.50 4.41 16
5 N -0.58 -23.01 2.41 -829.26 -2.00 -25.01 16
6 C 0.25 11.37 4.59 85.63 0.39 11.76 16
7 C -0.55 -25.83 6.66 25.60 0.17 -25.66 16
8 H 0.06 2.85 7.81 -2.91 -0.02 2.83 16
9 C 0.04 1.71 5.46 84.65 0.46 2.17 16
10 N -0.91 -46.18 13.29 21.45 0.28 -45.89 16
11 Si 0.95 38.09 29.54 68.60 2.03 40.11 16
12 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16
13 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16
14 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16
15 C 0.55 22.54 7.26 86.88 0.63 23.17 16
16 O -0.58 -24.96 16.69 -3.76 -0.06 -25.02 16
17 C -0.11 -4.17 4.89 -19.88 -0.10 -4.27 16
18 C -0.07 -2.64 7.74 22.63 0.18 -2.47 16
19 C 0.07 2.48 11.17 84.67 0.95 3.43 16
20 N -0.39 -13.10 10.08 -193.47 -1.95 -15.05 16
21 C -0.47 -14.63 6.86 84.68 0.58 -14.05 16
22 S 2.75 68.99 6.34 -56.49 -0.36 68.63 16
23 N -1.22 -18.50 9.52 37.02 0.35 -18.15 16
24 O -0.97 -29.71 17.85 -128.00 -2.28 -31.99 16
25 O -0.97 -28.33 17.25 -128.00 -2.21 -30.54 16
26 C -0.05 -1.74 9.29 22.63 0.21 -1.53 16
27 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16
28 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16
29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16
31 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16
32 H 0.09 3.11 8.03 -2.39 -0.02 3.09 16
33 H 0.10 3.10 7.54 -2.39 -0.02 3.08 16
34 H 0.03 1.34 7.55 -2.39 -0.02 1.32 16
35 H 0.03 1.22 5.69 -2.39 -0.01 1.21 16
36 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16
37 H 0.17 7.03 4.80 -2.91 -0.01 7.02 16
38 H 0.19 5.39 8.06 -2.90 -0.02 5.37 16
39 H 0.44 4.69 8.96 -96.75 -0.87 3.83 16
40 H 0.43 4.76 8.96 -96.75 -0.87 3.90 16
41 H 0.17 4.98 7.60 -2.91 -0.02 4.96 16
Total: -1.00 -68.82 365.33 -2.66 -71.48
By element:
Atomic # 1 Polarization: 26.08 SS G_CDS: -0.63 Total: 25.45 kcal
Atomic # 6 Polarization: -4.83 SS G_CDS: 5.67 Total: 0.84 kcal
Atomic # 7 Polarization: -100.78 SS G_CDS: -3.31 Total: -104.10 kcal
Atomic # 8 Polarization: -96.36 SS G_CDS: -6.05 Total: -102.41 kcal
Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.11 kcal
Atomic # 16 Polarization: 68.99 SS G_CDS: -0.36 Total: 68.63 kcal
Total: -68.82 -2.66 -71.48 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362023974.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.000 kcal
(2) G-P(sol) polarization free energy of solvation -68.815 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.816 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.662 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.477 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.478 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds