Wall clock time and date at job start Sat Apr 11 2020 06:50:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.46502 * 119.99741 * 2 1
4 4 C 1.52995 * 109.47425 * 270.00083 * 3 2 1
5 5 H 1.08996 * 109.47151 * 305.00025 * 4 3 2
6 6 O 1.42898 * 109.46879 * 64.99941 * 4 3 2
7 7 C 1.53001 * 109.47335 * 185.00088 * 4 3 2
8 8 N 1.46497 * 109.47262 * 179.97438 * 7 4 3
9 9 C 1.34776 * 119.99797 * 179.97438 * 8 7 4
10 10 O 1.21277 * 120.00396 * 359.97438 * 9 8 7
11 11 C 1.50703 * 119.99855 * 180.02562 * 9 8 7
12 12 S 1.80998 * 109.47233 * 179.97438 * 11 9 8
13 13 C 1.76204 * 100.00020 * 179.97438 * 12 11 9
14 14 H 1.07999 * 119.99814 * 0.02562 * 13 12 11
15 15 C 1.38801 * 119.99536 * 179.97438 * 13 12 11
16 16 N 1.31629 * 120.00310 * 0.02562 * 15 13 12
17 17 Si 1.86807 * 119.99471 * 180.02562 * 15 13 12
18 18 H 1.48499 * 109.47029 * 59.99867 * 17 15 13
19 19 H 1.48495 * 109.46856 * 180.02562 * 17 15 13
20 20 H 1.48499 * 109.46987 * 299.99818 * 17 15 13
21 21 C 1.34775 * 120.00516 * 180.02562 * 2 1 3
22 22 O 1.21492 * 120.00599 * 175.86380 * 21 2 1
23 23 C 1.48335 * 119.99747 * 355.86051 * 21 2 1
24 24 C 1.42270 * 126.93703 * 185.81144 * 23 21 2
25 25 C 1.35316 * 103.92083 * 180.02562 * 24 23 21
26 26 O 1.34016 * 106.66990 * 0.02562 * 25 24 23
27 27 N 1.20908 * 111.84431 * 359.70422 * 26 25 24
28 28 H 1.09005 * 109.47057 * 95.64947 * 1 2 3
29 29 H 1.09008 * 109.46900 * 215.64342 * 1 2 3
30 30 H 1.08992 * 109.47514 * 335.64470 * 1 2 3
31 31 H 1.09005 * 109.46722 * 149.99650 * 3 2 1
32 32 H 1.09002 * 109.46755 * 30.00549 * 3 2 1
33 33 H 0.96700 * 114.00021 * 60.00470 * 6 4 3
34 34 H 1.09006 * 109.46913 * 300.00028 * 7 4 3
35 35 H 1.08999 * 109.47295 * 59.99716 * 7 4 3
36 36 H 0.96996 * 119.99895 * 0.02562 * 8 7 4
37 37 H 1.09006 * 109.46939 * 299.99671 * 11 9 8
38 38 H 1.08999 * 109.47379 * 59.99427 * 11 9 8
39 39 H 0.96997 * 119.99520 * 179.97438 * 16 15 13
40 40 H 1.07992 * 128.04372 * 0.02769 * 24 23 21
41 41 H 1.08004 * 126.66953 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 6 2.4524 1.7105 -1.4424
5 1 2.9642 0.9133 -1.9815
6 8 1.2059 1.9936 -2.0813
7 6 3.3237 2.9682 -1.4442
8 7 3.5683 3.3909 -2.8254
9 6 4.3165 4.4842 -3.0731
10 8 4.7868 5.1184 -2.1526
11 6 4.5677 4.9193 -4.4939
12 16 5.5973 6.4079 -4.4960
13 6 5.7298 6.6859 -6.2309
14 1 5.2422 6.0162 -6.9238
15 6 6.4599 7.7662 -6.7068
16 7 7.0537 8.5826 -5.8621
17 14 6.5998 8.0613 -8.5461
18 1 5.2449 8.2633 -9.1194
19 1 7.4272 9.2696 -8.7920
20 1 7.2389 6.8851 -9.1889
21 6 2.1390 -1.1671 -0.0005
22 8 3.3515 -1.1685 -0.0764
23 6 1.4002 -2.4501 0.0916
24 6 1.9602 -3.7519 0.2185
25 6 0.8813 -4.5676 0.2610
26 8 -0.1994 -3.7810 0.1645
27 7 0.1006 -2.6130 0.0769
28 1 -0.3633 -0.1012 -1.0227
29 1 -0.3633 -0.8352 0.5989
30 1 -0.3634 0.9361 0.4238
31 1 3.1499 1.1384 0.5139
32 1 1.6083 2.0283 0.5139
33 1 0.6954 2.6950 -1.6541
34 1 2.8119 3.7655 -0.9051
35 1 4.2744 2.7523 -0.9569
36 1 3.1913 2.8842 -3.5616
37 1 5.0799 4.1221 -5.0328
38 1 3.6170 5.1348 -4.9814
39 1 7.5642 9.3373 -6.1949
40 1 3.0036 -4.0254 0.2692
41 1 0.8896 -5.6436 0.3537
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001511486911.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:30
Heat of formation + Delta-G solvation = -41.923708 kcal
Electronic energy + Delta-G solvation = -26348.320463 eV
Core-core repulsion = 22166.056454 eV
Total energy + Delta-G solvation = -4182.264009 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.108 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-45.62264 -40.48939 -39.27888 -37.86128 -35.81443 -34.50753 -34.11552 -32.45474
-32.41212 -31.05889 -29.27894 -27.29820 -26.53948 -25.44587 -24.14622 -23.46380
-22.28160 -20.65845 -20.14144 -18.43700 -18.31030 -17.94252 -17.59188 -17.26212
-16.53037 -16.38154 -16.08727 -15.64834 -15.12976 -14.99772 -14.78681 -14.71053
-14.11724 -13.99921 -13.92480 -13.75301 -13.38059 -13.28349 -13.04522 -12.88086
-12.54387 -12.22116 -11.75960 -11.74770 -11.52466 -11.04292 -11.02801 -11.02304
-10.86860 -10.76186 -10.62909 -10.32488 -9.81184 -9.47249 -9.10094 -9.04938
-8.90697 -8.22667 -6.48423 -6.19954 -3.90535 0.58526 1.15886 2.18156
2.58309 2.64345 3.03542 3.10052 3.25044 3.28499 3.31500 3.35872
3.68586 3.93947 4.03950 4.22212 4.35380 4.43889 4.50979 4.57544
4.66346 4.76320 4.84039 5.05539 5.14660 5.15105 5.18860 5.23321
5.30865 5.46928 5.53312 5.66809 5.76925 5.90007 5.92242 6.16897
6.57733 6.67639 7.22854 7.35536 7.57420 7.61080 7.72024 8.36850
8.61311 9.25230 10.87432
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.028022 B = 0.001652 C = 0.001630
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 998.984606 B =16942.509356 C =17174.222309
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.073 3.927
2 N -0.593 5.593
3 C 0.087 3.913
4 C 0.082 3.918
5 H 0.110 0.890
6 O -0.552 6.552
7 C 0.093 3.907
8 N -0.732 5.732
9 C 0.532 3.468
10 O -0.520 6.520
11 C -0.153 4.153
12 S -0.060 6.060
13 C -0.536 4.536
14 H 0.072 0.928
15 C 0.074 3.926
16 N -0.868 5.868
17 Si 0.919 3.081
18 H -0.274 1.274
19 H -0.283 1.283
20 H -0.274 1.274
21 C 0.594 3.406
22 O -0.519 6.519
23 C -0.024 4.024
24 C -0.185 4.185
25 C -0.055 4.055
26 O 0.115 5.885
27 N -0.327 5.327
28 H 0.066 0.934
29 H 0.089 0.911
30 H 0.073 0.927
31 H 0.101 0.899
32 H 0.092 0.908
33 H 0.375 0.625
34 H 0.070 0.930
35 H 0.078 0.922
36 H 0.403 0.597
37 H 0.090 0.910
38 H 0.090 0.910
39 H 0.269 0.731
40 H 0.182 0.818
41 H 0.225 0.775
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.682 -27.009 14.924 35.566
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 N -0.325 5.325
3 C -0.036 4.036
4 C 0.021 3.979
5 H 0.128 0.872
6 O -0.358 6.358
7 C -0.032 4.032
8 N -0.388 5.388
9 C 0.318 3.682
10 O -0.394 6.394
11 C -0.304 4.304
12 S 0.166 5.834
13 C -0.684 4.684
14 H 0.090 0.910
15 C -0.136 4.136
16 N -0.503 5.503
17 Si 0.745 3.255
18 H -0.199 1.199
19 H -0.208 1.208
20 H -0.199 1.199
21 C 0.380 3.620
22 O -0.393 6.393
23 C -0.183 4.183
24 C -0.208 4.208
25 C -0.135 4.135
26 O 0.042 5.958
27 N -0.030 5.030
28 H 0.085 0.915
29 H 0.107 0.893
30 H 0.092 0.908
31 H 0.119 0.881
32 H 0.110 0.890
33 H 0.223 0.777
34 H 0.089 0.911
35 H 0.096 0.904
36 H 0.237 0.763
37 H 0.108 0.892
38 H 0.108 0.892
39 H 0.079 0.921
40 H 0.199 0.801
41 H 0.242 0.758
Dipole moment (debyes) X Y Z Total
from point charges -16.929 -25.343 15.969 34.407
hybrid contribution -0.036 -0.802 -2.159 2.303
sum -16.965 -26.145 13.810 34.089
Atomic orbital electron populations
1.22200 0.77810 1.03608 1.03339 1.47524 1.07976 1.05045 1.71934
1.22238 0.99200 0.84697 0.97444 1.22602 0.85008 0.96822 0.93484
0.87211 1.86632 1.32125 1.59863 1.57137 1.21837 1.00388 0.95847
0.85162 1.45841 1.54910 1.30221 1.07783 1.20325 0.77132 0.79343
0.91357 1.90698 1.49036 1.53512 1.46161 1.23527 1.05710 1.06107
0.95015 1.85369 1.62839 1.25296 1.09855 1.22836 1.38338 1.15678
0.91582 0.90959 1.24991 0.94647 0.94910 0.99013 1.70009 1.31140
1.14701 1.34469 0.86221 0.78311 0.77826 0.83126 1.19942 1.20807
1.19940 1.16985 0.86189 0.81625 0.77190 1.90840 1.12576 1.86362
1.49490 1.23529 0.90128 0.96858 1.07781 1.22805 1.02376 0.89965
1.05612 1.26079 0.84504 0.99771 1.03168 1.84822 1.34006 1.11935
1.65043 1.74337 1.15580 0.97161 1.15901 0.91520 0.89324 0.90810
0.88098 0.89017 0.77726 0.91145 0.90422 0.76287 0.89199 0.89169
0.92141 0.80071 0.75836
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.47 9.34 59.85 0.56 1.03 16
2 N -0.59 -4.97 2.84 -182.51 -0.52 -5.49 16
3 C 0.09 0.66 5.07 -4.04 -0.02 0.63 16
4 C 0.08 0.72 3.30 -26.73 -0.09 0.63 16
5 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16
6 O -0.55 -4.63 12.64 -35.23 -0.45 -5.07 16
7 C 0.09 1.04 5.34 -4.04 -0.02 1.01 16
8 N -0.73 -10.10 5.45 -60.29 -0.33 -10.43 16
9 C 0.53 10.14 7.85 -10.98 -0.09 10.06 16
10 O -0.52 -11.91 15.86 5.56 0.09 -11.83 16
11 C -0.15 -3.17 6.16 36.01 0.22 -2.95 16
12 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16
13 C -0.54 -15.49 9.50 30.94 0.29 -15.20 16
14 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16
15 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16
16 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16
17 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16
18 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16
19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16
21 C 0.59 6.25 7.69 -12.11 -0.09 6.16 16
22 O -0.52 -6.90 16.58 5.37 0.09 -6.81 16
23 C -0.02 -0.21 6.88 -82.53 -0.57 -0.78 16
24 C -0.19 -1.12 11.00 -39.08 -0.43 -1.55 16
25 C -0.05 -0.18 12.28 29.69 0.36 0.18 16
26 O 0.12 0.67 11.18 17.24 0.19 0.86 16
27 N -0.33 -2.54 8.68 33.29 0.29 -2.26 16
28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
29 H 0.09 0.60 5.30 -51.92 -0.28 0.33 16
30 H 0.07 0.32 7.83 -51.93 -0.41 -0.09 16
31 H 0.10 0.85 7.48 -51.93 -0.39 0.46 16
32 H 0.09 0.45 7.86 -51.93 -0.41 0.05 16
33 H 0.38 1.98 9.05 45.56 0.41 2.39 16
34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
36 H 0.40 4.80 8.35 -40.82 -0.34 4.46 16
37 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16
38 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16
39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16
40 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16
41 H 0.23 -0.32 8.06 -52.48 -0.42 -0.74 16
LS Contribution 374.72 15.07 5.65 5.65
Total: -1.00 -38.74 374.72 -5.78 -44.52
By element:
Atomic # 1 Polarization: 6.86 SS G_CDS: -4.33 Total: 2.52 kcal
Atomic # 6 Polarization: 1.22 SS G_CDS: 0.04 Total: 1.26 kcal
Atomic # 7 Polarization: -44.03 SS G_CDS: 0.18 Total: -43.85 kcal
Atomic # 8 Polarization: -22.77 SS G_CDS: -0.08 Total: -22.85 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal
Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -38.74 -5.78 -44.52 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001511486911.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.597 kcal
(2) G-P(sol) polarization free energy of solvation -38.736 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.139 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.784 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.520 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.924 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds