Wall clock time and date at job start Sat Apr 11 2020 06:50:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.46502 * 119.99741 * 2 1
4 4 C 1.52995 * 109.47425 * 270.00083 * 3 2 1
5 5 H 1.08996 * 109.47151 * 305.00025 * 4 3 2
6 6 O 1.42898 * 109.46879 * 64.99941 * 4 3 2
7 7 C 1.53001 * 109.47335 * 185.00088 * 4 3 2
8 8 N 1.46497 * 109.47262 * 179.97438 * 7 4 3
9 9 C 1.34776 * 119.99797 * 179.97438 * 8 7 4
10 10 O 1.21277 * 120.00396 * 359.97438 * 9 8 7
11 11 C 1.50703 * 119.99855 * 180.02562 * 9 8 7
12 12 S 1.80998 * 109.47233 * 179.97438 * 11 9 8
13 13 C 1.76204 * 100.00020 * 179.97438 * 12 11 9
14 14 H 1.07999 * 119.99814 * 0.02562 * 13 12 11
15 15 C 1.38801 * 119.99536 * 179.97438 * 13 12 11
16 16 N 1.31629 * 120.00310 * 0.02562 * 15 13 12
17 17 Si 1.86807 * 119.99471 * 180.02562 * 15 13 12
18 18 H 1.48499 * 109.47029 * 59.99867 * 17 15 13
19 19 H 1.48495 * 109.46856 * 180.02562 * 17 15 13
20 20 H 1.48499 * 109.46987 * 299.99818 * 17 15 13
21 21 C 1.34775 * 120.00516 * 180.02562 * 2 1 3
22 22 O 1.21492 * 120.00599 * 175.86380 * 21 2 1
23 23 C 1.48335 * 119.99747 * 355.86051 * 21 2 1
24 24 C 1.42270 * 126.93703 * 185.81144 * 23 21 2
25 25 C 1.35316 * 103.92083 * 180.02562 * 24 23 21
26 26 O 1.34016 * 106.66990 * 0.02562 * 25 24 23
27 27 N 1.20908 * 111.84431 * 359.70422 * 26 25 24
28 28 H 1.09005 * 109.47057 * 95.64947 * 1 2 3
29 29 H 1.09008 * 109.46900 * 215.64342 * 1 2 3
30 30 H 1.08992 * 109.47514 * 335.64470 * 1 2 3
31 31 H 1.09005 * 109.46722 * 149.99650 * 3 2 1
32 32 H 1.09002 * 109.46755 * 30.00549 * 3 2 1
33 33 H 0.96700 * 114.00021 * 60.00470 * 6 4 3
34 34 H 1.09006 * 109.46913 * 300.00028 * 7 4 3
35 35 H 1.08999 * 109.47295 * 59.99716 * 7 4 3
36 36 H 0.96996 * 119.99895 * 0.02562 * 8 7 4
37 37 H 1.09006 * 109.46939 * 299.99671 * 11 9 8
38 38 H 1.08999 * 109.47379 * 59.99427 * 11 9 8
39 39 H 0.96997 * 119.99520 * 179.97438 * 16 15 13
40 40 H 1.07992 * 128.04372 * 0.02769 * 24 23 21
41 41 H 1.08004 * 126.66953 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 6 2.4524 1.7105 -1.4424
5 1 2.9642 0.9133 -1.9815
6 8 1.2059 1.9936 -2.0813
7 6 3.3237 2.9682 -1.4442
8 7 3.5683 3.3909 -2.8254
9 6 4.3165 4.4842 -3.0731
10 8 4.7868 5.1184 -2.1526
11 6 4.5677 4.9193 -4.4939
12 16 5.5973 6.4079 -4.4960
13 6 5.7298 6.6859 -6.2309
14 1 5.2422 6.0162 -6.9238
15 6 6.4599 7.7662 -6.7068
16 7 7.0537 8.5826 -5.8621
17 14 6.5998 8.0613 -8.5461
18 1 5.2449 8.2633 -9.1194
19 1 7.4272 9.2696 -8.7920
20 1 7.2389 6.8851 -9.1889
21 6 2.1390 -1.1671 -0.0005
22 8 3.3515 -1.1685 -0.0764
23 6 1.4002 -2.4501 0.0916
24 6 1.9602 -3.7519 0.2185
25 6 0.8813 -4.5676 0.2610
26 8 -0.1994 -3.7810 0.1645
27 7 0.1006 -2.6130 0.0769
28 1 -0.3633 -0.1012 -1.0227
29 1 -0.3633 -0.8352 0.5989
30 1 -0.3634 0.9361 0.4238
31 1 3.1499 1.1384 0.5139
32 1 1.6083 2.0283 0.5139
33 1 0.6954 2.6950 -1.6541
34 1 2.8119 3.7655 -0.9051
35 1 4.2744 2.7523 -0.9569
36 1 3.1913 2.8842 -3.5616
37 1 5.0799 4.1221 -5.0328
38 1 3.6170 5.1348 -4.9814
39 1 7.5642 9.3373 -6.1949
40 1 3.0036 -4.0254 0.2692
41 1 0.8896 -5.6436 0.3537
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001511486911.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:29
Heat of formation + Delta-G solvation = -73.939987 kcal
Electronic energy + Delta-G solvation = -26349.708793 eV
Core-core repulsion = 22166.056454 eV
Total energy + Delta-G solvation = -4183.652339 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.108 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-46.10723 -41.25416 -40.62583 -38.77517 -36.56482 -35.33037 -35.00335 -34.59417
-32.92311 -32.07376 -30.58245 -27.97967 -27.73508 -27.29361 -24.83361 -23.90923
-23.06478 -21.84666 -20.94602 -19.88063 -18.96692 -18.81389 -18.36703 -18.04758
-17.86826 -17.25923 -16.92626 -16.89193 -16.81183 -16.20122 -16.07790 -15.69589
-15.33297 -14.97866 -14.62726 -14.56035 -14.40584 -14.25621 -14.15024 -13.90756
-13.72922 -13.24068 -13.18313 -12.87472 -12.81346 -12.63943 -12.28893 -12.25901
-11.78152 -11.67712 -11.50589 -11.40959 -11.14005 -11.03363 -10.71154 -10.30672
-10.18856 -9.82349 -8.68207 -8.35549 -6.14018 0.04041 0.76667 1.24348
1.43218 1.44114 1.53259 1.57024 1.60904 1.92869 2.23188 2.27121
2.31530 2.79443 2.98361 3.27869 3.34853 3.48892 3.60989 3.78020
3.85852 3.95737 4.01982 4.18583 4.25489 4.27688 4.31770 4.48614
4.55384 4.60395 4.66284 4.70699 4.86740 4.97269 4.99021 5.27500
5.36638 5.40535 6.00798 6.18599 6.42830 6.70154 6.73548 7.05465
7.05621 7.18501 8.73438
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.028022 B = 0.001652 C = 0.001630
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 998.984606 B =16942.509356 C =17174.222309
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.075 3.925
2 N -0.589 5.589
3 C 0.087 3.913
4 C 0.102 3.898
5 H 0.089 0.911
6 O -0.558 6.558
7 C 0.093 3.907
8 N -0.709 5.709
9 C 0.535 3.465
10 O -0.564 6.564
11 C -0.131 4.131
12 S -0.148 6.148
13 C -0.550 4.550
14 H 0.082 0.918
15 C 0.014 3.986
16 N -0.910 5.910
17 Si 0.999 3.001
18 H -0.262 1.262
19 H -0.277 1.277
20 H -0.263 1.263
21 C 0.585 3.415
22 O -0.560 6.560
23 C -0.054 4.054
24 C -0.210 4.210
25 C -0.021 4.021
26 O 0.120 5.880
27 N -0.338 5.338
28 H 0.059 0.941
29 H 0.086 0.914
30 H 0.100 0.900
31 H 0.089 0.911
32 H 0.125 0.875
33 H 0.392 0.608
34 H 0.082 0.918
35 H 0.067 0.933
36 H 0.415 0.585
37 H 0.106 0.894
38 H 0.110 0.890
39 H 0.272 0.728
40 H 0.186 0.814
41 H 0.276 0.724
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.887 -28.986 14.171 37.901
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.320 5.320
3 C -0.036 4.036
4 C 0.041 3.959
5 H 0.107 0.893
6 O -0.366 6.366
7 C -0.032 4.032
8 N -0.363 5.363
9 C 0.321 3.679
10 O -0.443 6.443
11 C -0.282 4.282
12 S 0.079 5.921
13 C -0.697 4.697
14 H 0.100 0.900
15 C -0.191 4.191
16 N -0.547 5.547
17 Si 0.820 3.180
18 H -0.186 1.186
19 H -0.202 1.202
20 H -0.188 1.188
21 C 0.372 3.628
22 O -0.437 6.437
23 C -0.211 4.211
24 C -0.233 4.233
25 C -0.101 4.101
26 O 0.044 5.956
27 N -0.040 5.040
28 H 0.078 0.922
29 H 0.104 0.896
30 H 0.118 0.882
31 H 0.107 0.893
32 H 0.143 0.857
33 H 0.242 0.758
34 H 0.100 0.900
35 H 0.086 0.914
36 H 0.252 0.748
37 H 0.124 0.876
38 H 0.128 0.872
39 H 0.081 0.919
40 H 0.204 0.796
41 H 0.291 0.709
Dipole moment (debyes) X Y Z Total
from point charges -19.207 -27.339 15.219 36.714
hybrid contribution 0.525 -0.350 -1.847 1.951
sum -18.682 -27.689 13.372 35.979
Atomic orbital electron populations
1.22283 0.76419 1.04949 1.03076 1.47641 1.08810 1.04741 1.70776
1.22285 0.99511 0.85241 0.96562 1.22248 0.84735 0.94763 0.94127
0.89288 1.86614 1.31745 1.60720 1.57513 1.22017 1.00642 0.97247
0.83285 1.45613 1.52780 1.28222 1.09643 1.20027 0.77573 0.80287
0.90046 1.90688 1.51248 1.55375 1.46956 1.23375 1.05084 1.02819
0.96931 1.85520 1.65437 1.30203 1.10900 1.23181 1.38665 1.16230
0.91659 0.90002 1.26130 0.93901 0.94388 1.04661 1.70173 1.32021
1.15382 1.37082 0.85002 0.78861 0.78033 0.76086 1.18620 1.20247
1.18776 1.17378 0.85990 0.82780 0.76654 1.90801 1.14214 1.87094
1.51628 1.23553 0.90849 0.97060 1.09688 1.23047 1.03567 0.89525
1.07162 1.26908 0.82521 1.01107 0.99613 1.84788 1.34806 1.11663
1.64297 1.74341 1.15060 0.98203 1.16420 0.92186 0.89606 0.88184
0.89261 0.85700 0.75807 0.89964 0.91424 0.74832 0.87565 0.87201
0.91940 0.79643 0.70901
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.85 9.34 127.77 1.19 2.04 16
2 N -0.59 -9.50 2.84 -849.63 -2.41 -11.91 16
3 C 0.09 1.21 5.07 86.38 0.44 1.65 16
4 C 0.10 1.69 3.30 30.59 0.10 1.79 16
5 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16
6 O -0.56 -8.12 12.64 -148.98 -1.88 -10.00 16
7 C 0.09 1.97 5.34 86.38 0.46 2.43 16
8 N -0.71 -18.66 5.45 -463.06 -2.52 -21.18 16
9 C 0.53 20.17 7.85 87.66 0.69 20.86 16
10 O -0.56 -26.29 15.86 -3.02 -0.05 -26.34 16
11 C -0.13 -5.35 6.16 71.24 0.44 -4.91 16
12 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16
13 C -0.55 -31.90 9.50 67.95 0.65 -31.25 16
14 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16
15 C 0.01 0.81 5.49 84.86 0.47 1.28 16
16 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16
17 Si 1.00 44.09 29.55 68.60 2.03 46.12 16
18 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16
19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16
20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16
21 C 0.59 12.59 7.69 86.93 0.67 13.26 16
22 O -0.56 -15.66 16.58 -3.69 -0.06 -15.72 16
23 C -0.05 -0.94 6.88 42.96 0.30 -0.64 16
24 C -0.21 -2.37 11.00 22.60 0.25 -2.13 16
25 C -0.02 -0.09 12.28 67.15 0.82 0.74 16
26 O 0.12 1.15 11.18 71.88 0.80 1.95 16
27 N -0.34 -4.96 8.68 -49.51 -0.43 -5.39 16
28 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16
29 H 0.09 1.07 5.30 -2.38 -0.01 1.06 16
30 H 0.10 0.59 7.83 -2.39 -0.02 0.57 16
31 H 0.09 1.50 7.48 -2.38 -0.02 1.49 16
32 H 0.13 0.90 7.86 -2.39 -0.02 0.88 16
33 H 0.39 2.93 9.05 -74.06 -0.67 2.26 16
34 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16
35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16
36 H 0.41 9.09 8.35 -92.71 -0.77 8.32 16
37 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16
38 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16
39 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16
40 H 0.19 1.79 8.06 -2.91 -0.02 1.76 16
41 H 0.28 -2.04 8.06 -2.91 -0.02 -2.06 16
Total: -1.00 -88.08 374.72 0.72 -87.36
By element:
Atomic # 1 Polarization: 15.96 SS G_CDS: -0.35 Total: 15.61 kcal
Atomic # 6 Polarization: -1.36 SS G_CDS: 6.47 Total: 5.11 kcal
Atomic # 7 Polarization: -89.52 SS G_CDS: -5.08 Total: -94.60 kcal
Atomic # 8 Polarization: -48.91 SS G_CDS: -1.19 Total: -50.10 kcal
Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal
Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal
Total: -88.08 0.72 -87.36 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001511486911.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.423 kcal
(2) G-P(sol) polarization free energy of solvation -88.084 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.661 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.363 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.940 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds