Wall clock time and date at job start Sat Apr 11 2020 06:48:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.38348 * 127.15326 * 2 1
4 4 C 1.39773 * 126.56386 * 359.97438 * 3 2 1
5 5 H 1.07994 * 120.00462 * 5.49102 * 4 3 2
6 6 C 1.40094 * 119.99928 * 185.49163 * 4 3 2
7 7 N 1.30811 * 119.99818 * 184.32636 * 6 4 3
8 8 Si 1.86800 * 119.99855 * 4.32498 * 6 4 3
9 9 H 1.48495 * 109.46762 * 179.97438 * 8 6 4
10 10 H 1.48500 * 109.46949 * 299.99938 * 8 6 4
11 11 H 1.48501 * 109.46992 * 59.99978 * 8 6 4
12 12 N 1.33103 * 106.87187 * 179.73684 * 3 2 1
13 13 N 1.28516 * 109.74011 * 0.26414 * 12 3 2
14 14 C 1.32386 * 110.20992 * 359.97438 * 13 12 3
15 15 S 1.76195 * 126.25997 * 179.97438 * 14 13 12
16 16 C 1.81004 * 100.00049 * 0.02758 * 15 14 13
17 17 C 1.50696 * 109.46927 * 180.02562 * 16 15 14
18 18 O 1.20755 * 120.00423 * 355.11464 * 17 16 15
19 19 C 1.50701 * 119.99769 * 175.12285 * 17 16 15
20 20 C 1.50701 * 115.55472 * 65.68731 * 19 17 16
21 21 C 1.38233 * 120.00273 * 245.69245 * 20 19 17
22 22 C 1.38225 * 120.00028 * 179.74313 * 21 20 19
23 23 C 1.38239 * 120.00384 * 0.52851 * 22 21 20
24 24 C 1.38247 * 119.99333 * 359.74843 * 23 22 21
25 25 C 1.38227 * 120.00065 * 359.97438 * 24 23 22
26 26 C 1.53004 * 117.49838 * 280.01797 * 19 17 16
27 27 C 1.53002 * 117.49898 * 211.36253 * 19 17 16
28 28 H 1.09002 * 109.46668 * 89.99761 * 1 2 3
29 29 H 1.08997 * 109.47207 * 210.00161 * 1 2 3
30 30 H 1.09002 * 109.46644 * 330.00447 * 1 2 3
31 31 H 0.96998 * 120.00040 * 354.89302 * 7 6 4
32 32 H 1.08998 * 109.46842 * 299.99698 * 16 15 14
33 33 H 1.08997 * 109.47329 * 59.99826 * 16 15 14
34 34 H 1.08003 * 119.99876 * 359.97438 * 21 20 19
35 35 H 1.08003 * 120.00468 * 180.29876 * 22 21 20
36 36 H 1.07994 * 120.00540 * 179.76912 * 23 22 21
37 37 H 1.07993 * 119.99742 * 180.02562 * 24 23 22
38 38 H 1.08006 * 120.00111 * 180.02562 * 25 24 23
39 39 H 1.09010 * 117.49514 * 359.97438 * 26 19 17
40 40 H 1.09000 * 117.50229 * 145.02080 * 26 19 17
41 41 H 1.09002 * 117.50062 * 214.97759 * 27 19 17
42 42 H 1.09000 * 117.49559 * 359.97390 * 27 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.3006 1.1027 0.0000
4 6 1.9087 2.4443 -0.0005
5 1 0.8637 2.7017 0.0885
6 6 2.8716 3.4553 -0.1165
7 7 2.5150 4.7110 -0.0321
8 14 4.6648 3.0100 -0.3918
9 1 5.4750 4.2513 -0.4802
10 1 5.1488 2.1819 0.7419
11 1 4.7957 2.2429 -1.6566
12 7 3.5491 0.6413 0.0059
13 7 3.5370 -0.6438 0.0038
14 6 2.2904 -1.0894 -0.0029
15 16 1.7873 -2.7780 -0.0086
16 6 3.4059 -3.5882 -0.0018
17 6 3.2190 -5.0836 -0.0061
18 8 2.1098 -5.5538 0.0760
19 6 4.4166 -5.9922 -0.1127
20 6 5.3681 -5.9534 1.0553
21 6 6.6527 -5.4722 0.8847
22 6 7.5236 -5.4318 1.9573
23 6 7.1136 -5.8827 3.1981
24 6 5.8307 -6.3693 3.3673
25 6 4.9579 -6.4044 2.2960
26 6 5.0144 -6.2127 -1.5038
27 6 4.2246 -7.3335 -0.8233
28 1 -0.3633 0.0000 -1.0277
29 1 -0.3633 -0.8899 0.5138
30 1 -0.3633 0.8901 0.5138
31 1 1.5761 4.9450 0.0365
32 1 3.9652 -3.2898 -0.8884
33 1 3.9562 -3.2930 0.8915
34 1 6.9746 -5.1244 -0.0857
35 1 8.5257 -5.0513 1.8252
36 1 7.7953 -5.8545 4.0353
37 1 5.5102 -6.7211 4.3367
38 1 3.9555 -6.7841 2.4283
39 1 4.5412 -5.7009 -2.3419
40 1 6.0958 -6.3301 -1.5741
41 1 4.7867 -8.1879 -0.4462
42 1 3.2320 -7.5589 -1.2133
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000527260695.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:43
Heat of formation + Delta-G solvation = 75.826035 kcal
Electronic energy + Delta-G solvation = -26227.962669 eV
Core-core repulsion = 22493.946686 eV
Total energy + Delta-G solvation = -3734.015983 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 343.110 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.96251 -40.63157 -38.95935 -36.62666 -33.96639 -33.60636 -31.16214 -30.99595
-30.46483 -29.87807 -26.76666 -25.43942 -24.74326 -23.31960 -22.33509 -21.99432
-21.47579 -20.29546 -19.10663 -18.22884 -17.47878 -16.83780 -16.48395 -15.74934
-15.36877 -15.13704 -15.01857 -14.92925 -14.71698 -14.51377 -13.98114 -13.66383
-13.59717 -13.25012 -13.04486 -12.94104 -12.74282 -12.58136 -12.51185 -11.96679
-11.91814 -11.63102 -11.42982 -11.16822 -10.93241 -10.89142 -10.59083 -10.42685
-10.04651 -9.91739 -9.60321 -9.42620 -9.13093 -9.12660 -8.88974 -8.71268
-8.42619 -7.45645 -7.13380 -4.87264 1.05682 1.19511 1.61716 1.69515
2.50758 2.87448 3.25541 3.50608 3.54506 3.57057 3.76005 3.84784
4.02077 4.11736 4.20242 4.38521 4.48234 4.62237 4.75887 4.81805
4.91057 4.93520 5.07946 5.18150 5.22354 5.29517 5.37180 5.38629
5.44758 5.53925 5.59803 5.71667 5.75793 5.76745 5.82864 5.90012
6.25234 6.31050 6.33746 6.34452 6.61483 6.75996 7.09161 7.18489
7.37102 7.49621 8.01896 8.31963 8.52608 9.93164 10.07209
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.013301 B = 0.003047 C = 0.002711
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2104.574407 B = 9186.118460 C =10324.564242
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.101 3.899
2 N -0.511 5.511
3 C 0.345 3.655
4 C -0.492 4.492
5 H 0.083 0.917
6 C 0.064 3.936
7 N -0.807 5.807
8 Si 1.112 2.888
9 H -0.311 1.311
10 H -0.260 1.260
11 H -0.280 1.280
12 N -0.415 5.415
13 N -0.270 5.270
14 C 0.056 3.944
15 S 0.004 5.996
16 C -0.154 4.154
17 C 0.418 3.582
18 O -0.430 6.430
19 C -0.141 4.141
20 C -0.047 4.047
21 C -0.104 4.104
22 C -0.117 4.117
23 C -0.118 4.118
24 C -0.118 4.118
25 C -0.108 4.108
26 C -0.149 4.149
27 C -0.141 4.141
28 H 0.061 0.939
29 H 0.070 0.930
30 H 0.079 0.921
31 H 0.283 0.717
32 H 0.125 0.875
33 H 0.127 0.873
34 H 0.127 0.873
35 H 0.125 0.875
36 H 0.122 0.878
37 H 0.123 0.877
38 H 0.122 0.878
39 H 0.105 0.895
40 H 0.109 0.891
41 H 0.104 0.896
42 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.754 -21.736 1.208 22.283
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.044 4.044
2 N -0.212 5.212
3 C 0.103 3.897
4 C -0.532 4.532
5 H 0.101 0.899
6 C -0.158 4.158
7 N -0.431 5.431
8 Si 0.941 3.059
9 H -0.241 1.241
10 H -0.186 1.186
11 H -0.207 1.207
12 N -0.265 5.265
13 N -0.114 5.114
14 C -0.318 4.318
15 S 0.231 5.769
16 C -0.303 4.303
17 C 0.290 3.710
18 O -0.301 6.301
19 C -0.144 4.144
20 C -0.047 4.047
21 C -0.122 4.122
22 C -0.135 4.135
23 C -0.136 4.136
24 C -0.136 4.136
25 C -0.126 4.126
26 C -0.186 4.186
27 C -0.178 4.178
28 H 0.079 0.921
29 H 0.089 0.911
30 H 0.098 0.902
31 H 0.095 0.905
32 H 0.143 0.857
33 H 0.145 0.855
34 H 0.145 0.855
35 H 0.143 0.857
36 H 0.140 0.860
37 H 0.141 0.859
38 H 0.140 0.860
39 H 0.123 0.877
40 H 0.128 0.872
41 H 0.123 0.877
42 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 5.978 -21.791 1.141 22.625
hybrid contribution -2.032 0.307 0.286 2.075
sum 3.946 -21.484 1.427 21.890
Atomic orbital electron populations
1.21559 0.77693 1.03021 1.02089 1.45812 1.06440 1.04805 1.64153
1.21719 0.85105 0.89066 0.93858 1.19407 0.97407 0.87227 1.49207
0.89861 1.27364 1.08502 0.91260 0.88715 1.70674 1.21600 1.18481
1.32299 0.82702 0.70581 0.72163 0.80444 1.24107 1.18582 1.20694
1.73975 1.15915 1.00921 1.35721 1.74247 1.15389 1.05677 1.16081
1.25621 0.91000 0.93741 1.21458 1.85051 1.06994 0.89459 1.95435
1.23920 1.01653 0.95293 1.09421 1.23014 0.88276 0.89302 0.70367
1.90417 1.26810 1.78253 1.34633 1.20448 0.98238 1.01097 0.94605
1.18660 0.93226 1.00359 0.92477 1.21070 0.92906 0.98673 0.99535
1.21167 0.99882 0.99594 0.92867 1.21217 0.96283 0.98632 0.97459
1.21134 0.93894 0.99928 0.98680 1.21019 0.99916 0.99381 0.92245
1.23161 1.01002 1.01753 0.92653 1.23093 1.02501 0.91095 1.01157
0.92075 0.91107 0.90210 0.90523 0.85666 0.85540 0.85495 0.85714
0.85980 0.85882 0.85997 0.87651 0.87230 0.87716 0.87565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.82 10.89 59.85 0.65 2.47 16
2 N -0.51 -11.95 3.26 -123.17 -0.40 -12.35 16
3 C 0.35 9.24 7.27 -154.81 -1.13 8.12 16
4 C -0.49 -13.23 9.50 -38.31 -0.36 -13.59 16
5 H 0.08 2.17 7.47 -52.49 -0.39 1.78 16
6 C 0.06 1.74 5.52 -17.29 -0.10 1.64 16
7 N -0.81 -21.66 13.65 55.56 0.76 -20.90 16
8 Si 1.11 27.95 25.90 -169.99 -4.40 23.54 16
9 H -0.31 -7.49 7.11 56.52 0.40 -7.09 16
10 H -0.26 -6.74 6.75 56.52 0.38 -6.36 16
11 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16
12 N -0.42 -11.49 7.51 31.26 0.23 -11.26 16
13 N -0.27 -6.86 11.62 30.89 0.36 -6.50 16
14 C 0.06 1.27 8.09 -87.28 -0.71 0.56 16
15 S 0.00 0.07 20.93 -107.50 -2.25 -2.18 16
16 C -0.15 -2.31 5.62 36.00 0.20 -2.11 16
17 C 0.42 5.52 6.35 -29.04 -0.18 5.34 16
18 O -0.43 -6.60 16.22 6.00 0.10 -6.50 16
19 C -0.14 -1.46 2.01 -156.81 -0.31 -1.77 16
20 C -0.05 -0.49 5.09 -104.62 -0.53 -1.02 16
21 C -0.10 -1.01 9.23 -39.59 -0.37 -1.38 16
22 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16
23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16
24 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16
25 C -0.11 -1.12 9.66 -39.58 -0.38 -1.51 16
26 C -0.15 -1.21 9.43 -26.69 -0.25 -1.46 16
27 C -0.14 -1.21 9.76 -26.69 -0.26 -1.47 16
28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
29 H 0.07 1.12 7.85 -51.93 -0.41 0.71 16
30 H 0.08 1.39 7.48 -51.93 -0.39 1.00 16
31 H 0.28 7.23 8.72 -40.82 -0.36 6.87 16
32 H 0.13 1.82 8.14 -51.92 -0.42 1.40 16
33 H 0.13 1.98 8.14 -51.92 -0.42 1.56 16
34 H 0.13 1.05 7.03 -52.48 -0.37 0.69 16
35 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16
36 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16
37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16
38 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16
39 H 0.11 0.83 8.14 -51.92 -0.42 0.41 16
40 H 0.11 0.72 7.14 -51.93 -0.37 0.35 16
41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16
42 H 0.11 0.95 8.00 -51.93 -0.42 0.53 16
LS Contribution 375.24 15.07 5.65 5.65
Total: -1.00 -32.72 375.24 -10.19 -42.91
By element:
Atomic # 1 Polarization: 3.54 SS G_CDS: -5.32 Total: -1.78 kcal
Atomic # 6 Polarization: -5.71 SS G_CDS: -4.92 Total: -10.63 kcal
Atomic # 7 Polarization: -51.96 SS G_CDS: 0.95 Total: -51.01 kcal
Atomic # 8 Polarization: -6.60 SS G_CDS: 0.10 Total: -6.50 kcal
Atomic # 14 Polarization: 27.95 SS G_CDS: -4.40 Total: 23.54 kcal
Atomic # 16 Polarization: 0.07 SS G_CDS: -2.25 Total: -2.18 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -32.72 -10.19 -42.91 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000527260695.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.736 kcal
(2) G-P(sol) polarization free energy of solvation -32.718 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.018 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.910 kcal
(6) G-S(sol) free energy of system = (1) + (5) 75.826 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds