Wall clock time and date at job start Sat Apr 11 2020 06:48:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.38348 * 127.15326 * 2 1
4 4 C 1.39773 * 126.56386 * 359.97438 * 3 2 1
5 5 H 1.07994 * 120.00462 * 5.49102 * 4 3 2
6 6 C 1.40094 * 119.99928 * 185.49163 * 4 3 2
7 7 N 1.30811 * 119.99818 * 184.32636 * 6 4 3
8 8 Si 1.86800 * 119.99855 * 4.32498 * 6 4 3
9 9 H 1.48495 * 109.46762 * 179.97438 * 8 6 4
10 10 H 1.48500 * 109.46949 * 299.99938 * 8 6 4
11 11 H 1.48501 * 109.46992 * 59.99978 * 8 6 4
12 12 N 1.33103 * 106.87187 * 179.73684 * 3 2 1
13 13 N 1.28516 * 109.74011 * 0.26414 * 12 3 2
14 14 C 1.32386 * 110.20992 * 359.97438 * 13 12 3
15 15 S 1.76195 * 126.25997 * 179.97438 * 14 13 12
16 16 C 1.81004 * 100.00049 * 0.02758 * 15 14 13
17 17 C 1.50696 * 109.46927 * 180.02562 * 16 15 14
18 18 O 1.20755 * 120.00423 * 355.11464 * 17 16 15
19 19 C 1.50701 * 119.99769 * 175.12285 * 17 16 15
20 20 C 1.50701 * 115.55472 * 65.68731 * 19 17 16
21 21 C 1.38233 * 120.00273 * 245.69245 * 20 19 17
22 22 C 1.38225 * 120.00028 * 179.74313 * 21 20 19
23 23 C 1.38239 * 120.00384 * 0.52851 * 22 21 20
24 24 C 1.38247 * 119.99333 * 359.74843 * 23 22 21
25 25 C 1.38227 * 120.00065 * 359.97438 * 24 23 22
26 26 C 1.53004 * 117.49838 * 280.01797 * 19 17 16
27 27 C 1.53002 * 117.49898 * 211.36253 * 19 17 16
28 28 H 1.09002 * 109.46668 * 89.99761 * 1 2 3
29 29 H 1.08997 * 109.47207 * 210.00161 * 1 2 3
30 30 H 1.09002 * 109.46644 * 330.00447 * 1 2 3
31 31 H 0.96998 * 120.00040 * 354.89302 * 7 6 4
32 32 H 1.08998 * 109.46842 * 299.99698 * 16 15 14
33 33 H 1.08997 * 109.47329 * 59.99826 * 16 15 14
34 34 H 1.08003 * 119.99876 * 359.97438 * 21 20 19
35 35 H 1.08003 * 120.00468 * 180.29876 * 22 21 20
36 36 H 1.07994 * 120.00540 * 179.76912 * 23 22 21
37 37 H 1.07993 * 119.99742 * 180.02562 * 24 23 22
38 38 H 1.08006 * 120.00111 * 180.02562 * 25 24 23
39 39 H 1.09010 * 117.49514 * 359.97438 * 26 19 17
40 40 H 1.09000 * 117.50229 * 145.02080 * 26 19 17
41 41 H 1.09002 * 117.50062 * 214.97759 * 27 19 17
42 42 H 1.09000 * 117.49559 * 359.97390 * 27 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.3006 1.1027 0.0000
4 6 1.9087 2.4443 -0.0005
5 1 0.8637 2.7017 0.0885
6 6 2.8716 3.4553 -0.1165
7 7 2.5150 4.7110 -0.0321
8 14 4.6648 3.0100 -0.3918
9 1 5.4750 4.2513 -0.4802
10 1 5.1488 2.1819 0.7419
11 1 4.7957 2.2429 -1.6566
12 7 3.5491 0.6413 0.0059
13 7 3.5370 -0.6438 0.0038
14 6 2.2904 -1.0894 -0.0029
15 16 1.7873 -2.7780 -0.0086
16 6 3.4059 -3.5882 -0.0018
17 6 3.2190 -5.0836 -0.0061
18 8 2.1098 -5.5538 0.0760
19 6 4.4166 -5.9922 -0.1127
20 6 5.3681 -5.9534 1.0553
21 6 6.6527 -5.4722 0.8847
22 6 7.5236 -5.4318 1.9573
23 6 7.1136 -5.8827 3.1981
24 6 5.8307 -6.3693 3.3673
25 6 4.9579 -6.4044 2.2960
26 6 5.0144 -6.2127 -1.5038
27 6 4.2246 -7.3335 -0.8233
28 1 -0.3633 0.0000 -1.0277
29 1 -0.3633 -0.8899 0.5138
30 1 -0.3633 0.8901 0.5138
31 1 1.5761 4.9450 0.0365
32 1 3.9652 -3.2898 -0.8884
33 1 3.9562 -3.2930 0.8915
34 1 6.9746 -5.1244 -0.0857
35 1 8.5257 -5.0513 1.8252
36 1 7.7953 -5.8545 4.0353
37 1 5.5102 -6.7211 4.3367
38 1 3.9555 -6.7841 2.4283
39 1 4.5412 -5.7009 -2.3419
40 1 6.0958 -6.3301 -1.5741
41 1 4.7867 -8.1879 -0.4462
42 1 3.2320 -7.5589 -1.2133
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000527260695.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:43
Heat of formation + Delta-G solvation = 59.922820 kcal
Electronic energy + Delta-G solvation = -26228.652284 eV
Core-core repulsion = 22493.946686 eV
Total energy + Delta-G solvation = -3734.705598 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 343.110 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.87441 -41.52967 -39.82678 -37.41508 -35.95590 -35.43055 -32.20557 -31.85909
-31.72265 -31.28184 -28.45207 -27.28216 -25.64847 -24.00283 -23.39868 -23.14578
-22.69731 -22.15056 -20.21450 -20.05126 -18.56106 -18.20192 -17.34044 -17.07825
-16.96398 -16.55884 -16.18206 -15.80725 -15.75046 -15.70415 -15.53866 -15.23232
-14.86111 -14.47002 -14.29470 -14.23946 -13.89507 -13.80510 -13.65674 -13.55958
-13.11762 -12.86975 -12.56255 -12.32259 -12.11503 -12.02328 -11.81067 -11.63163
-11.55910 -11.42346 -11.33712 -11.04467 -10.95598 -10.60118 -10.38886 -9.84043
-9.63452 -9.50733 -8.78351 -6.88505 0.12526 0.32324 0.47674 0.63555
0.95358 0.98766 1.53942 1.58579 1.93475 2.10694 2.18183 2.40841
2.49809 2.64725 2.94242 3.02813 3.48427 3.76165 3.85058 3.89226
3.92664 3.98441 4.12850 4.16681 4.29210 4.30450 4.34803 4.44134
4.52691 4.55143 4.66745 4.66791 4.70513 4.74395 4.92805 5.07505
5.12242 5.16579 5.20500 5.35435 5.55675 5.61688 5.61868 5.64940
5.98612 6.06218 6.12853 6.37013 6.54339 7.90818 8.11568
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.013301 B = 0.003047 C = 0.002711
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2104.574407 B = 9186.118460 C =10324.564242
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.092 3.908
2 N -0.514 5.514
3 C 0.326 3.674
4 C -0.509 4.509
5 H 0.083 0.917
6 C 0.042 3.958
7 N -0.822 5.822
8 Si 1.145 2.855
9 H -0.297 1.297
10 H -0.276 1.276
11 H -0.292 1.292
12 N -0.444 5.444
13 N -0.303 5.303
14 C 0.072 3.928
15 S 0.031 5.969
16 C -0.154 4.154
17 C 0.429 3.571
18 O -0.454 6.454
19 C -0.154 4.154
20 C -0.056 4.056
21 C -0.113 4.113
22 C -0.125 4.125
23 C -0.124 4.124
24 C -0.127 4.127
25 C -0.125 4.125
26 C -0.135 4.135
27 C -0.134 4.134
28 H 0.080 0.920
29 H 0.096 0.904
30 H 0.084 0.916
31 H 0.286 0.714
32 H 0.132 0.868
33 H 0.121 0.879
34 H 0.140 0.860
35 H 0.143 0.857
36 H 0.142 0.858
37 H 0.138 0.862
38 H 0.118 0.882
39 H 0.109 0.891
40 H 0.129 0.871
41 H 0.118 0.882
42 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.207 -23.750 0.990 24.334
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.050 4.050
2 N -0.214 5.214
3 C 0.080 3.920
4 C -0.550 4.550
5 H 0.101 0.899
6 C -0.178 4.178
7 N -0.447 5.447
8 Si 0.974 3.026
9 H -0.226 1.226
10 H -0.203 1.203
11 H -0.219 1.219
12 N -0.293 5.293
13 N -0.146 5.146
14 C -0.303 4.303
15 S 0.258 5.742
16 C -0.303 4.303
17 C 0.303 3.697
18 O -0.327 6.327
19 C -0.156 4.156
20 C -0.056 4.056
21 C -0.131 4.131
22 C -0.143 4.143
23 C -0.142 4.142
24 C -0.144 4.144
25 C -0.143 4.143
26 C -0.172 4.172
27 C -0.171 4.171
28 H 0.098 0.902
29 H 0.114 0.886
30 H 0.103 0.897
31 H 0.097 0.903
32 H 0.151 0.849
33 H 0.140 0.860
34 H 0.158 0.842
35 H 0.160 0.840
36 H 0.160 0.840
37 H 0.156 0.844
38 H 0.136 0.864
39 H 0.127 0.873
40 H 0.147 0.853
41 H 0.136 0.864
42 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 6.418 -23.792 0.922 24.660
hybrid contribution -2.233 0.673 0.383 2.363
sum 4.185 -23.119 1.304 23.531
Atomic orbital electron populations
1.21913 0.74747 1.04556 1.03820 1.46169 1.08358 1.04122 1.62744
1.21794 0.85690 0.89848 0.94701 1.19421 0.97433 0.87595 1.50521
0.89855 1.27806 1.09808 0.91441 0.88759 1.70668 1.21909 1.18483
1.33622 0.82224 0.69506 0.71895 0.79014 1.22578 1.20312 1.21948
1.73867 1.16920 1.02179 1.36363 1.74182 1.16791 1.04907 1.18692
1.26559 0.90481 0.95998 1.17292 1.85056 1.08781 0.85678 1.94688
1.24110 0.99975 0.96587 1.09615 1.23125 0.88978 0.88436 0.69173
1.90413 1.27964 1.78323 1.36017 1.20316 0.97491 1.01756 0.96072
1.18719 0.93594 1.00914 0.92416 1.21292 0.92785 0.98565 1.00418
1.21484 1.00714 0.99286 0.92841 1.21530 0.96463 0.98034 0.98181
1.21393 0.94076 0.99812 0.99166 1.21148 1.00109 1.00150 0.92874
1.23329 1.02144 1.00634 0.91095 1.23168 1.02651 0.90942 1.00325
0.90194 0.88580 0.89714 0.90251 0.84948 0.86046 0.84240 0.83968
0.84018 0.84370 0.86405 0.87284 0.85333 0.86372 0.87981
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 3.14 10.89 127.77 1.39 4.53 16
2 N -0.51 -23.53 3.26 -543.61 -1.77 -25.31 16
3 C 0.33 17.48 7.27 133.23 0.97 18.45 16
4 C -0.51 -27.57 9.50 23.09 0.22 -27.35 16
5 H 0.08 4.38 7.47 -2.91 -0.02 4.36 16
6 C 0.04 2.28 5.52 85.30 0.47 2.76 16
7 N -0.82 -44.24 13.65 21.86 0.30 -43.94 16
8 Si 1.15 57.61 25.90 68.60 1.78 59.38 16
9 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16
10 H -0.28 -14.51 6.75 99.48 0.67 -13.84 16
11 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16
12 N -0.44 -24.73 7.51 -55.02 -0.41 -25.15 16
13 N -0.30 -15.31 11.62 -56.18 -0.65 -15.96 16
14 C 0.07 3.19 8.09 179.18 1.45 4.64 16
15 S 0.03 1.07 20.93 -56.49 -1.18 -0.11 16
16 C -0.15 -4.42 5.62 71.23 0.40 -4.02 16
17 C 0.43 10.73 6.35 29.10 0.18 10.91 16
18 O -0.45 -13.36 16.22 -1.43 -0.02 -13.38 16
19 C -0.15 -2.91 2.01 -53.67 -0.11 -3.02 16
20 C -0.06 -1.09 5.09 -19.86 -0.10 -1.20 16
21 C -0.11 -1.99 9.23 22.27 0.21 -1.78 16
22 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16
23 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16
24 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16
25 C -0.12 -2.49 9.66 22.27 0.22 -2.27 16
26 C -0.14 -1.85 9.43 30.62 0.29 -1.56 16
27 C -0.13 -2.00 9.76 30.62 0.30 -1.71 16
28 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16
29 H 0.10 2.78 7.85 -2.39 -0.02 2.77 16
30 H 0.08 2.82 7.48 -2.39 -0.02 2.81 16
31 H 0.29 14.68 8.72 -92.71 -0.81 13.87 16
32 H 0.13 3.66 8.14 -2.40 -0.02 3.64 16
33 H 0.12 3.70 8.14 -2.40 -0.02 3.68 16
34 H 0.14 2.00 7.03 -2.91 -0.02 1.97 16
35 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16
36 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16
37 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16
38 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16
39 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16
40 H 0.13 1.28 7.14 -2.39 -0.02 1.27 16
41 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16
42 H 0.10 1.63 8.00 -2.39 -0.02 1.61 16
Total: -1.00 -69.96 375.24 5.56 -64.40
By element:
Atomic # 1 Polarization: 6.33 SS G_CDS: 0.97 Total: 7.30 kcal
Atomic # 6 Polarization: -13.79 SS G_CDS: 6.55 Total: -7.23 kcal
Atomic # 7 Polarization: -107.82 SS G_CDS: -2.54 Total: -110.36 kcal
Atomic # 8 Polarization: -13.36 SS G_CDS: -0.02 Total: -13.38 kcal
Atomic # 14 Polarization: 57.61 SS G_CDS: 1.78 Total: 59.38 kcal
Atomic # 16 Polarization: 1.07 SS G_CDS: -1.18 Total: -0.11 kcal
Total: -69.96 5.56 -64.40 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000527260695.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 124.324 kcal
(2) G-P(sol) polarization free energy of solvation -69.959 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.365 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.401 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.923 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds