Wall clock time and date at job start Sat Apr 11 2020 06:50:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09000 * 109.47050 * 2 1
4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3
5 5 O 1.21294 * 120.00194 * 239.99970 * 4 2 1
6 6 N 1.34778 * 119.99637 * 60.00346 * 4 2 1
7 7 C 1.40592 * 119.99962 * 179.97438 * 6 4 2
8 8 C 1.40654 * 126.08209 * 0.02562 * 7 6 4
9 9 N 1.30904 * 108.38898 * 180.02562 * 8 7 6
10 10 N 1.40072 * 108.40728 * 0.02562 * 9 8 7
11 11 C 1.37319 * 126.07073 * 179.97438 * 10 9 8
12 12 H 1.08000 * 120.00330 * 179.97438 * 11 10 9
13 13 C 1.38994 * 120.00207 * 359.97438 * 11 10 9
14 14 N 1.31293 * 119.99513 * 0.02562 * 13 11 10
15 15 Si 1.86793 * 120.00267 * 179.97438 * 13 11 10
16 16 H 1.48498 * 109.47074 * 90.00141 * 15 13 11
17 17 H 1.48505 * 109.47186 * 210.00452 * 15 13 11
18 18 H 1.48500 * 109.47052 * 330.00263 * 15 13 11
19 19 C 1.35680 * 126.08535 * 179.71934 * 7 6 4
20 20 N 1.46500 * 109.46998 * 119.99945 * 2 1 3
21 21 C 1.34946 * 126.03682 * 34.71371 * 20 2 1
22 22 C 1.35314 * 107.74728 * 179.84253 * 21 20 2
23 23 C 1.39868 * 107.91825 * 0.42407 * 22 21 20
24 24 C 1.50699 * 125.89765 * 179.72101 * 23 22 21
25 25 F 1.39903 * 109.47289 * 185.00103 * 24 23 22
26 26 F 1.39903 * 109.47059 * 304.99573 * 24 23 22
27 27 F 1.39902 * 109.47625 * 65.00121 * 24 23 22
28 28 N 1.30832 * 108.20342 * 359.73819 * 23 22 21
29 29 H 1.09001 * 109.46801 * 300.00112 * 1 2 3
30 30 H 1.09001 * 109.46998 * 59.99708 * 1 2 3
31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3
32 32 H 0.97000 * 120.00145 * 0.02562 * 6 4 2
33 33 H 1.07998 * 125.80243 * 0.02562 * 8 7 6
34 34 H 0.97004 * 119.99708 * 179.97438 * 14 13 11
35 35 H 1.07996 * 126.24512 * 359.97155 * 19 7 6
36 36 H 1.08003 * 126.13055 * 0.02562 * 21 20 2
37 37 H 1.08005 * 126.04473 * 180.16869 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7105 -1.2304
5 8 2.7298 -1.6966 -1.1191
6 7 1.7068 -0.2500 -2.4545
7 6 2.1759 -0.9124 -3.6024
8 6 2.9879 -2.0607 -3.6225
9 7 3.2170 -2.3827 -4.8705
10 7 2.5637 -1.4565 -5.6934
11 6 2.5640 -1.4535 -7.0665
12 1 2.0239 -0.6889 -7.6051
13 6 3.2593 -2.4347 -7.7635
14 7 3.9155 -3.3645 -7.1088
15 14 3.2592 -2.4311 -9.6314
16 1 4.4019 -1.6213 -10.1250
17 1 3.3882 -3.8244 -10.1291
18 1 1.9872 -1.8450 -10.1252
19 6 1.9211 -0.5612 -4.8880
20 7 2.0184 -0.6906 1.1962
21 6 1.4373 -1.7525 1.7926
22 6 2.1965 -2.0927 2.8598
23 6 3.2734 -1.2024 2.9231
24 6 4.3664 -1.2102 3.9605
25 9 5.2014 -0.1046 3.7665
26 9 3.7980 -1.1467 5.2373
27 9 5.1146 -2.3863 3.8410
28 7 3.1676 -0.3615 1.9265
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.1495 0.5389 -2.5435
33 1 3.3592 -2.5872 -2.7557
34 1 4.4005 -4.0495 -7.5952
35 1 1.3221 0.2760 -5.2144
36 1 0.5304 -2.2447 1.4736
37 1 2.0028 -2.9054 3.5443
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000865057185.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:30
Heat of formation + Delta-G solvation = -10.234247 kcal
Electronic energy + Delta-G solvation = -28920.866143 eV
Core-core repulsion = 24094.968352 eV
Total energy + Delta-G solvation = -4825.897791 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 343.100 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-50.24857 -47.78601 -47.73338 -41.74139 -40.05479 -38.80914 -34.95258 -34.44332
-33.25040 -30.96749 -30.39058 -30.22801 -27.87043 -26.68737 -25.34307 -24.36729
-22.00901 -21.27986 -21.02236 -20.15130 -19.53086 -18.64301 -18.32450 -18.12287
-17.70818 -17.16041 -16.79149 -15.54946 -15.30637 -15.02722 -14.92129 -14.62418
-14.55004 -14.17479 -14.13203 -14.01844 -13.89153 -13.88696 -13.74977 -13.62245
-13.30284 -13.06327 -12.98574 -12.65140 -12.31441 -11.99773 -11.74891 -11.53291
-11.31655 -11.18406 -11.03229 -10.58587 -10.33210 -10.10751 -9.45299 -9.26364
-8.93717 -8.85680 -8.15580 -6.83650 -6.62793 -4.31239 1.36031 1.71238
2.19320 2.55013 2.62770 2.94508 3.00299 3.05964 3.33935 3.52300
3.56763 3.79106 3.83096 4.19394 4.26928 4.36028 4.41646 4.53241
4.57554 4.89244 4.95159 5.03943 5.06708 5.21187 5.33616 5.51275
5.57187 5.99295 6.13582 6.31662 6.56281 6.75401 6.85160 6.95622
7.13711 7.14876 7.76803 7.96884 8.15608 8.45777 8.66611 9.28611
9.57376 10.32980
Molecular weight = 343.10amu
Principal moments of inertia in cm(-1)
A = 0.022026 B = 0.002218 C = 0.002094
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1270.899347 B =12620.618810 C =13368.847715
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.142 3.858
3 H 0.131 0.869
4 C 0.484 3.516
5 O -0.516 6.516
6 N -0.613 5.613
7 C -0.065 4.065
8 C -0.030 4.030
9 N -0.260 5.260
10 N -0.140 5.140
11 C -0.323 4.323
12 H 0.117 0.883
13 C 0.046 3.954
14 N -0.768 5.768
15 Si 0.936 3.064
16 H -0.270 1.270
17 H -0.275 1.275
18 H -0.264 1.264
19 C -0.082 4.082
20 N -0.328 5.328
21 C 0.082 3.918
22 C -0.233 4.233
23 C -0.022 4.022
24 C 0.558 3.442
25 F -0.168 7.168
26 F -0.170 7.170
27 F -0.166 7.166
28 N -0.228 5.228
29 H 0.080 0.920
30 H 0.093 0.907
31 H 0.076 0.924
32 H 0.398 0.602
33 H 0.174 0.826
34 H 0.276 0.724
35 H 0.147 0.853
36 H 0.184 0.816
37 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.390 6.840 16.887 20.058
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.036 3.964
3 H 0.149 0.851
4 C 0.266 3.734
5 O -0.391 6.391
6 N -0.256 5.256
7 C -0.170 4.170
8 C -0.206 4.206
9 N -0.091 5.091
10 N 0.093 4.907
11 C -0.455 4.455
12 H 0.135 0.865
13 C -0.172 4.172
14 N -0.394 5.394
15 Si 0.759 3.241
16 H -0.195 1.195
17 H -0.200 1.200
18 H -0.188 1.188
19 C -0.233 4.233
20 N -0.111 5.111
21 C -0.064 4.064
22 C -0.263 4.263
23 C -0.189 4.189
24 C 0.501 3.499
25 F -0.149 7.149
26 F -0.151 7.151
27 F -0.148 7.148
28 N -0.052 5.052
29 H 0.099 0.901
30 H 0.112 0.888
31 H 0.095 0.905
32 H 0.231 0.769
33 H 0.191 0.809
34 H 0.087 0.913
35 H 0.164 0.836
36 H 0.201 0.799
37 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -6.657 6.155 15.452 17.916
hybrid contribution -0.875 0.341 0.115 0.946
sum -7.532 6.496 15.567 18.473
Atomic orbital electron populations
1.22194 0.90149 1.04735 1.04854 1.21278 0.96254 0.97822 0.81077
0.85147 1.20226 0.82956 0.86151 0.84033 1.90688 1.37079 1.25776
1.85560 1.42342 1.50168 1.29487 1.03625 1.17207 1.13324 1.02157
0.84342 1.24090 1.02575 0.97447 0.96455 1.78290 1.19424 1.12875
0.98506 1.44579 1.26386 1.14565 1.05143 1.19896 1.34112 1.14772
0.76757 0.86512 1.25666 0.95166 0.94881 1.01460 1.70214 1.22478
1.10156 1.36538 0.85811 0.79423 0.78424 0.80409 1.19527 1.20027
1.18769 1.21240 1.10735 1.02172 0.89197 1.48230 1.17888 1.24170
1.20814 1.22522 1.00037 0.90172 0.93645 1.21109 0.96666 1.04904
1.03575 1.21935 0.98589 1.00236 0.98114 1.16874 0.79771 0.74110
0.79131 1.93234 1.73204 1.53526 1.94965 1.93220 1.84861 1.96075
1.40937 1.93251 1.77566 1.48093 1.95863 1.77343 1.01656 1.21628
1.04568 0.90117 0.88794 0.90502 0.76861 0.80908 0.91343 0.83590
0.79855 0.82243
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.03 8.73 37.16 0.32 -0.71 16
2 C 0.14 1.52 3.73 -69.08 -0.26 1.26 16
3 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16
4 C 0.48 7.64 7.19 -10.99 -0.08 7.57 16
5 O -0.52 -10.74 13.57 5.55 0.08 -10.66 16
6 N -0.61 -9.65 5.36 -10.00 -0.05 -9.70 16
7 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16
8 C -0.03 -0.78 10.85 -17.04 -0.18 -0.96 16
9 N -0.26 -7.45 10.40 30.80 0.32 -7.13 16
10 N -0.14 -3.73 3.74 -11.41 -0.04 -3.77 16
11 C -0.32 -8.33 10.25 -14.81 -0.15 -8.48 16
12 H 0.12 2.67 7.83 -52.49 -0.41 2.26 16
13 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16
14 N -0.77 -21.19 11.81 55.50 0.66 -20.53 16
15 Si 0.94 18.53 29.55 -169.99 -5.02 13.51 16
16 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16
17 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16
18 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16
19 C -0.08 -1.84 11.49 -16.39 -0.19 -2.03 16
20 N -0.33 -4.21 3.02 -55.99 -0.17 -4.37 16
21 C 0.08 0.89 10.58 -17.22 -0.18 0.71 16
22 C -0.23 -2.64 10.73 -40.01 -0.43 -3.07 16
23 C -0.02 -0.30 6.51 -82.41 -0.54 -0.83 16
24 C 0.56 6.96 3.51 36.01 0.13 7.08 16
25 F -0.17 -2.25 17.14 2.25 0.04 -2.21 16
26 F -0.17 -1.89 17.30 2.25 0.04 -1.85 16
27 F -0.17 -2.14 17.30 2.25 0.04 -2.10 16
28 N -0.23 -3.43 12.35 33.67 0.42 -3.02 16
29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
30 H 0.09 0.44 7.57 -51.93 -0.39 0.05 16
31 H 0.08 0.50 7.15 -51.93 -0.37 0.13 16
32 H 0.40 4.39 8.24 -40.82 -0.34 4.05 16
33 H 0.17 4.50 5.92 -52.49 -0.31 4.19 16
34 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16
35 H 0.15 2.66 8.06 -52.49 -0.42 2.24 16
36 H 0.18 1.36 7.26 -52.48 -0.38 0.98 16
37 H 0.16 1.37 8.06 -52.48 -0.42 0.94 16
LS Contribution 343.50 15.07 5.18 5.18
Total: -1.00 -35.56 343.50 -3.79 -39.35
By element:
Atomic # 1 Polarization: 10.75 SS G_CDS: -3.03 Total: 7.73 kcal
Atomic # 6 Polarization: 1.83 SS G_CDS: -2.23 Total: -0.41 kcal
Atomic # 7 Polarization: -49.65 SS G_CDS: 1.13 Total: -48.53 kcal
Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal
Atomic # 9 Polarization: -6.28 SS G_CDS: 0.12 Total: -6.16 kcal
Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal
Total LS contribution 5.18 Total: 5.18 kcal
Total: -35.56 -3.79 -39.35 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000865057185.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.115 kcal
(2) G-P(sol) polarization free energy of solvation -35.558 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.442 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.792 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.234 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds