Wall clock time and date at job start Sat Apr 11 2020 06:50:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09000 * 109.47050 * 2 1
4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3
5 5 O 1.21294 * 120.00194 * 239.99970 * 4 2 1
6 6 N 1.34778 * 119.99637 * 60.00346 * 4 2 1
7 7 C 1.40592 * 119.99962 * 179.97438 * 6 4 2
8 8 C 1.40654 * 126.08209 * 0.02562 * 7 6 4
9 9 N 1.30904 * 108.38898 * 180.02562 * 8 7 6
10 10 N 1.40072 * 108.40728 * 0.02562 * 9 8 7
11 11 C 1.37319 * 126.07073 * 179.97438 * 10 9 8
12 12 H 1.08000 * 120.00330 * 179.97438 * 11 10 9
13 13 C 1.38994 * 120.00207 * 359.97438 * 11 10 9
14 14 N 1.31293 * 119.99513 * 0.02562 * 13 11 10
15 15 Si 1.86793 * 120.00267 * 179.97438 * 13 11 10
16 16 H 1.48498 * 109.47074 * 90.00141 * 15 13 11
17 17 H 1.48505 * 109.47186 * 210.00452 * 15 13 11
18 18 H 1.48500 * 109.47052 * 330.00263 * 15 13 11
19 19 C 1.35680 * 126.08535 * 179.71934 * 7 6 4
20 20 N 1.46500 * 109.46998 * 119.99945 * 2 1 3
21 21 C 1.34946 * 126.03682 * 34.71371 * 20 2 1
22 22 C 1.35314 * 107.74728 * 179.84253 * 21 20 2
23 23 C 1.39868 * 107.91825 * 0.42407 * 22 21 20
24 24 C 1.50699 * 125.89765 * 179.72101 * 23 22 21
25 25 F 1.39903 * 109.47289 * 185.00103 * 24 23 22
26 26 F 1.39903 * 109.47059 * 304.99573 * 24 23 22
27 27 F 1.39902 * 109.47625 * 65.00121 * 24 23 22
28 28 N 1.30832 * 108.20342 * 359.73819 * 23 22 21
29 29 H 1.09001 * 109.46801 * 300.00112 * 1 2 3
30 30 H 1.09001 * 109.46998 * 59.99708 * 1 2 3
31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3
32 32 H 0.97000 * 120.00145 * 0.02562 * 6 4 2
33 33 H 1.07998 * 125.80243 * 0.02562 * 8 7 6
34 34 H 0.97004 * 119.99708 * 179.97438 * 14 13 11
35 35 H 1.07996 * 126.24512 * 359.97155 * 19 7 6
36 36 H 1.08003 * 126.13055 * 0.02562 * 21 20 2
37 37 H 1.08005 * 126.04473 * 180.16869 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7105 -1.2304
5 8 2.7298 -1.6966 -1.1191
6 7 1.7068 -0.2500 -2.4545
7 6 2.1759 -0.9124 -3.6024
8 6 2.9879 -2.0607 -3.6225
9 7 3.2170 -2.3827 -4.8705
10 7 2.5637 -1.4565 -5.6934
11 6 2.5640 -1.4535 -7.0665
12 1 2.0239 -0.6889 -7.6051
13 6 3.2593 -2.4347 -7.7635
14 7 3.9155 -3.3645 -7.1088
15 14 3.2592 -2.4311 -9.6314
16 1 4.4019 -1.6213 -10.1250
17 1 3.3882 -3.8244 -10.1291
18 1 1.9872 -1.8450 -10.1252
19 6 1.9211 -0.5612 -4.8880
20 7 2.0184 -0.6906 1.1962
21 6 1.4373 -1.7525 1.7926
22 6 2.1965 -2.0927 2.8598
23 6 3.2734 -1.2024 2.9231
24 6 4.3664 -1.2102 3.9605
25 9 5.2014 -0.1046 3.7665
26 9 3.7980 -1.1467 5.2373
27 9 5.1146 -2.3863 3.8410
28 7 3.1676 -0.3615 1.9265
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.1495 0.5389 -2.5435
33 1 3.3592 -2.5872 -2.7557
34 1 4.4005 -4.0495 -7.5952
35 1 1.3221 0.2760 -5.2144
36 1 0.5304 -2.2447 1.4736
37 1 2.0028 -2.9054 3.5443
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000865057185.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:23
Heat of formation + Delta-G solvation = -35.433045 kcal
Electronic energy + Delta-G solvation = -28921.958845 eV
Core-core repulsion = 24094.968352 eV
Total energy + Delta-G solvation = -4826.990493 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 343.100 amu
Computer time = 6.61 seconds
Orbital eigenvalues (eV)
-51.24328 -48.76466 -48.74884 -42.68380 -41.71119 -40.32031 -36.03535 -35.92692
-34.96841 -32.31583 -31.80330 -31.21695 -29.56550 -27.56604 -26.99114 -25.51911
-23.23223 -22.74259 -22.23151 -21.45928 -21.09555 -19.63565 -19.45877 -19.27113
-19.06310 -18.31464 -17.86454 -17.42190 -16.75521 -16.33876 -16.04374 -15.70815
-15.61622 -15.50642 -15.27508 -15.17256 -14.92995 -14.90131 -14.89065 -14.83266
-14.73430 -14.43460 -13.81150 -13.51289 -13.40617 -13.29545 -13.20890 -12.92262
-12.86592 -12.64829 -12.12181 -12.09419 -11.90459 -11.22162 -11.04944 -10.84060
-10.63105 -10.13035 -9.85918 -8.57644 -8.48348 -6.26306 0.38804 0.81987
1.14598 1.30819 1.39685 1.43874 1.57385 1.67304 1.82997 2.03500
2.24407 2.45708 2.57298 2.85170 2.87774 3.08241 3.29063 3.46863
3.64412 3.74345 3.84566 4.23595 4.41922 4.47495 4.55310 4.61291
4.67013 4.72948 4.98515 5.02029 5.11705 5.14746 5.27372 5.38268
5.75959 5.94323 6.21071 6.27599 6.62799 6.71705 7.26418 7.45007
7.65803 8.50874
Molecular weight = 343.10amu
Principal moments of inertia in cm(-1)
A = 0.022026 B = 0.002218 C = 0.002094
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1270.899347 B =12620.618810 C =13368.847715
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.150 3.850
3 H 0.152 0.848
4 C 0.484 3.516
5 O -0.569 6.569
6 N -0.601 5.601
7 C -0.044 4.044
8 C -0.060 4.060
9 N -0.313 5.313
10 N -0.168 5.168
11 C -0.352 4.352
12 H 0.144 0.856
13 C -0.008 4.008
14 N -0.826 5.826
15 Si 1.019 2.981
16 H -0.266 1.266
17 H -0.279 1.279
18 H -0.241 1.241
19 C -0.075 4.075
20 N -0.336 5.336
21 C 0.084 3.916
22 C -0.240 4.240
23 C -0.036 4.036
24 C 0.561 3.439
25 F -0.176 7.176
26 F -0.160 7.160
27 F -0.171 7.171
28 N -0.272 5.272
29 H 0.104 0.896
30 H 0.117 0.883
31 H 0.077 0.923
32 H 0.425 0.575
33 H 0.160 0.840
34 H 0.276 0.724
35 H 0.193 0.807
36 H 0.219 0.781
37 H 0.184 0.816
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.177 8.835 16.794 22.024
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.045 3.955
3 H 0.169 0.831
4 C 0.269 3.731
5 O -0.447 6.447
6 N -0.247 5.247
7 C -0.151 4.151
8 C -0.236 4.236
9 N -0.145 5.145
10 N 0.064 4.936
11 C -0.483 4.483
12 H 0.161 0.839
13 C -0.219 4.219
14 N -0.454 5.454
15 Si 0.838 3.162
16 H -0.191 1.191
17 H -0.204 1.204
18 H -0.164 1.164
19 C -0.225 4.225
20 N -0.119 5.119
21 C -0.061 4.061
22 C -0.269 4.269
23 C -0.202 4.202
24 C 0.505 3.495
25 F -0.157 7.157
26 F -0.142 7.142
27 F -0.152 7.152
28 N -0.096 5.096
29 H 0.123 0.877
30 H 0.136 0.864
31 H 0.096 0.904
32 H 0.263 0.737
33 H 0.177 0.823
34 H 0.085 0.915
35 H 0.210 0.790
36 H 0.235 0.765
37 H 0.201 0.799
Dipole moment (debyes) X Y Z Total
from point charges -9.489 8.215 15.399 19.866
hybrid contribution -0.049 -0.231 0.338 0.413
sum -9.537 7.984 15.737 20.059
Atomic orbital electron populations
1.22302 0.86144 1.05595 1.07231 1.21491 0.98928 0.97400 0.77684
0.83055 1.21274 0.81287 0.85294 0.85235 1.90680 1.39197 1.28353
1.86483 1.42236 1.50411 1.30039 1.02058 1.17244 1.11002 1.00502
0.86316 1.24092 1.04424 0.99503 0.95538 1.78179 1.21393 1.15070
0.99857 1.44860 1.27605 1.15394 1.05786 1.20640 1.34891 1.15865
0.76953 0.83881 1.26897 0.94060 0.93934 1.07052 1.70406 1.24477
1.11609 1.38893 0.84596 0.80281 0.78192 0.73176 1.19056 1.20387
1.16429 1.22052 1.09539 1.02105 0.88839 1.48480 1.17471 1.24903
1.21060 1.23177 1.00736 0.89283 0.92938 1.21527 0.95929 1.05115
1.04298 1.22187 0.99251 1.00737 0.98069 1.16829 0.79563 0.73693
0.79453 1.93212 1.73507 1.53960 1.95064 1.93233 1.84651 1.96007
1.40280 1.93238 1.77725 1.48318 1.95933 1.77254 1.03295 1.23256
1.05780 0.87704 0.86424 0.90421 0.73666 0.82267 0.91472 0.78964
0.76456 0.79858
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.29 8.73 71.98 0.63 -0.67 16
2 C 0.15 2.79 3.73 44.25 0.17 2.96 16
3 H 0.15 2.21 8.14 -2.39 -0.02 2.19 16
4 C 0.48 14.57 7.19 87.66 0.63 15.20 16
5 O -0.57 -23.95 13.57 -3.07 -0.04 -23.99 16
6 N -0.60 -17.53 5.36 -303.93 -1.63 -19.16 16
7 C -0.04 -1.90 6.90 37.73 0.26 -1.64 16
8 C -0.06 -3.23 10.85 85.42 0.93 -2.30 16
9 N -0.31 -18.69 10.40 -56.47 -0.59 -19.27 16
10 N -0.17 -9.04 3.74 -190.01 -0.71 -9.75 16
11 C -0.35 -18.15 10.25 84.02 0.86 -17.29 16
12 H 0.14 6.28 7.83 -2.91 -0.02 6.26 16
13 C -0.01 -0.41 5.50 84.95 0.47 0.06 16
14 N -0.83 -47.53 11.81 21.66 0.26 -47.27 16
15 Si 1.02 37.91 29.55 68.60 2.03 39.93 16
16 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16
17 H -0.28 -10.37 7.11 99.48 0.71 -9.66 16
18 H -0.24 -8.02 7.11 99.48 0.71 -7.31 16
19 C -0.07 -3.24 11.49 83.38 0.96 -2.28 16
20 N -0.34 -8.01 3.02 -331.06 -1.00 -9.01 16
21 C 0.08 1.64 10.58 83.54 0.88 2.52 16
22 C -0.24 -5.06 10.73 21.99 0.24 -4.83 16
23 C -0.04 -0.97 6.51 43.10 0.28 -0.69 16
24 C 0.56 13.93 3.51 71.24 0.25 14.18 16
25 F -0.18 -4.78 17.14 44.97 0.77 -4.01 16
26 F -0.16 -3.45 17.30 44.97 0.78 -2.68 16
27 F -0.17 -4.42 17.30 44.97 0.78 -3.64 16
28 N -0.27 -8.02 12.35 -47.39 -0.59 -8.60 16
29 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16
30 H 0.12 0.47 7.57 -2.39 -0.02 0.45 16
31 H 0.08 0.69 7.15 -2.39 -0.02 0.67 16
32 H 0.42 7.66 8.24 -92.71 -0.76 6.89 16
33 H 0.16 8.83 5.92 -2.91 -0.02 8.81 16
34 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16
35 H 0.19 6.24 8.06 -2.91 -0.02 6.22 16
36 H 0.22 2.49 7.26 -2.91 -0.02 2.46 16
37 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16
Total: -1.00 -84.04 343.50 7.01 -77.03
By element:
Atomic # 1 Polarization: 24.78 SS G_CDS: 0.40 Total: 25.18 kcal
Atomic # 6 Polarization: -1.32 SS G_CDS: 6.55 Total: 5.22 kcal
Atomic # 7 Polarization: -108.81 SS G_CDS: -4.25 Total: -113.06 kcal
Atomic # 8 Polarization: -23.95 SS G_CDS: -0.04 Total: -23.99 kcal
Atomic # 9 Polarization: -12.65 SS G_CDS: 2.33 Total: -10.32 kcal
Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.93 kcal
Total: -84.04 7.01 -77.03 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000865057185.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.598 kcal
(2) G-P(sol) polarization free energy of solvation -84.041 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.443 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.009 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.031 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.433 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 6.61 seconds