Wall clock time and date at job start Sat Apr 11 2020 06:48:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86802 * 119.99800 * 2 1
4 4 H 1.48504 * 109.46678 * 239.99973 * 3 2 1
5 5 H 1.48499 * 109.47250 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47262 * 120.00063 * 3 2 1
7 7 C 1.38804 * 119.99972 * 179.97438 * 2 1 3
8 8 H 1.08006 * 119.99755 * 195.05057 * 7 2 1
9 9 N 1.36941 * 120.00429 * 15.05348 * 7 2 1
10 10 C 1.46610 * 119.89163 * 197.61581 * 9 7 2
11 11 C 1.53109 * 108.00744 * 237.32263 * 10 9 7
12 12 C 1.53005 * 109.44665 * 301.02559 * 11 10 9
13 13 H 1.09002 * 113.42511 * 275.04111 * 12 11 10
14 14 C 1.54657 * 110.83861 * 143.89026 * 12 11 10
15 15 N 1.47803 * 85.79309 * 270.23166 * 14 12 11
16 16 C 1.34777 * 135.01578 * 153.82524 * 15 14 12
17 17 O 1.21609 * 120.00332 * 180.34527 * 16 15 14
18 18 C 1.47369 * 119.99617 * 0.34598 * 16 15 14
19 19 C 1.38758 * 120.55406 * 7.38151 * 18 16 15
20 20 N 1.31898 * 121.12343 * 179.97438 * 19 18 16
21 21 C 1.31670 * 122.21905 * 359.97438 * 20 19 18
22 22 C 1.39290 * 121.13669 * 0.02562 * 21 20 19
23 23 S 1.75879 * 131.39169 * 179.97438 * 22 21 20
24 24 C 1.75547 * 91.52540 * 179.97438 * 23 22 21
25 25 C 1.32487 * 110.79360 * 0.02562 * 24 23 22
26 26 C 1.40010 * 115.77740 * 359.74842 * 25 24 23
27 27 C 1.46825 * 89.97193 * 333.80548 * 15 14 12
28 28 H 1.08995 * 111.56120 * 274.47876 * 27 15 14
29 29 C 1.45683 * 119.88616 * 17.61347 * 9 7 2
30 30 H 0.96995 * 119.99647 * 0.02562 * 1 2 3
31 31 H 1.09001 * 109.75498 * 117.70029 * 10 9 7
32 32 H 1.08997 * 109.76069 * 356.95137 * 10 9 7
33 33 H 1.08998 * 109.47007 * 61.01719 * 11 10 9
34 34 H 1.09000 * 109.47545 * 181.02612 * 11 10 9
35 35 H 1.08998 * 113.81690 * 24.44880 * 14 12 11
36 36 H 1.08999 * 113.81917 * 156.00933 * 14 12 11
37 37 H 1.08000 * 119.44202 * 0.02562 * 19 18 16
38 38 H 1.08001 * 119.43545 * 180.02562 * 21 20 19
39 39 H 1.07999 * 124.60580 * 180.02562 * 24 23 22
40 40 H 1.07998 * 122.11096 * 180.02562 * 25 24 23
41 41 H 1.09001 * 108.71337 * 19.76732 * 29 9 7
42 42 H 1.08996 * 108.71310 * 261.74780 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1039 1.6964 -1.2126
5 1 1.2852 2.7465 -0.0006
6 1 3.1040 1.6965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0625 -1.2180 0.2434
9 7 1.3609 -2.3679 -0.3069
10 6 1.9591 -3.6556 0.0581
11 6 2.1163 -4.4838 -1.2200
12 6 0.7460 -4.6793 -1.8721
13 1 0.1897 -5.5244 -1.4665
14 6 0.8616 -4.6519 -3.4141
15 7 0.6465 -3.1944 -3.2955
16 6 0.9776 -2.1185 -4.0367
17 8 0.6568 -1.0046 -3.6689
18 6 1.7284 -2.2920 -5.2929
19 6 1.9681 -3.5603 -5.8020
20 7 2.6383 -3.7286 -6.9254
21 6 3.1116 -2.7144 -7.6191
22 6 2.9249 -1.4013 -7.1938
23 16 3.4305 0.1309 -7.8939
24 6 2.6852 1.0295 -6.5829
25 6 2.1158 0.2078 -5.7136
26 6 2.2162 -1.1569 -6.0099
27 6 -0.0779 -3.4045 -2.0358
28 1 -1.1306 -3.6260 -2.2112
29 6 0.0779 -2.3242 -0.9957
30 1 -0.4849 0.8400 -0.0004
31 1 1.3080 -4.1790 0.7584
32 1 2.9357 -3.4924 0.5137
33 1 2.7770 -3.9618 -1.9122
34 1 2.5433 -5.4558 -0.9731
35 1 1.8497 -4.9222 -3.7863
36 1 0.0541 -5.1759 -3.9254
37 1 1.5989 -4.4245 -5.2697
38 1 3.6539 -2.9040 -8.5337
39 1 2.6902 2.1061 -6.4967
40 1 1.6026 0.5681 -4.8343
41 1 -0.0257 -1.3537 -1.4810
42 1 -0.7183 -2.4306 -0.2589
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001084603148.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:35
Heat of formation + Delta-G solvation = 110.662257 kcal
Electronic energy + Delta-G solvation = -28447.861084 eV
Core-core repulsion = 24715.355713 eV
Total energy + Delta-G solvation = -3732.505371 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 343.110 amu
Computer time = 1.52 seconds
Orbital eigenvalues (eV)
-40.99513 -39.99689 -37.50593 -36.30183 -35.24297 -32.35131 -31.76667 -30.38214
-30.11098 -28.75782 -27.08672 -24.71383 -24.46882 -23.88992 -22.78449 -21.35352
-20.75791 -20.24807 -18.37746 -17.67034 -17.43786 -16.52068 -16.29497 -15.82282
-15.50437 -15.28178 -14.69443 -14.40939 -14.24169 -14.01288 -13.72393 -13.42057
-13.34623 -13.22007 -12.82302 -12.60335 -12.29662 -12.28841 -11.99562 -11.92733
-11.52610 -11.15154 -10.98959 -10.71043 -10.65654 -10.51144 -10.21982 -10.00127
-9.92007 -9.86114 -9.75695 -9.63119 -9.12497 -8.97037 -8.26963 -8.18879
-7.94181 -6.69224 -5.64006 -3.01664 0.23981 0.68931 1.30592 1.74308
2.31581 3.11191 3.13666 3.45874 3.51725 3.53598 3.90523 4.15804
4.43120 4.55520 4.59275 4.64464 4.68391 5.03879 5.06235 5.16202
5.26481 5.33597 5.43108 5.48538 5.50285 5.58774 5.68571 5.85069
5.87159 6.05931 6.11331 6.16875 6.26160 6.31521 6.36942 6.39904
6.52299 6.57275 6.75325 6.97104 7.51455 7.67950 7.77430 7.98666
8.20434 8.56927 8.66551 9.35020 10.00163 10.44337 11.42478
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.010667 B = 0.005069 C = 0.003755
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2624.367779 B = 5522.152730 C = 7454.238890
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.007 3.993
3 Si 0.901 3.099
4 H -0.286 1.286
5 H -0.291 1.291
6 H -0.286 1.286
7 C -0.249 4.249
8 H 0.066 0.934
9 N -0.587 5.587
10 C 0.148 3.852
11 C -0.119 4.119
12 C -0.108 4.108
13 H 0.089 0.911
14 C 0.081 3.919
15 N -0.623 5.623
16 C 0.579 3.421
17 O -0.504 6.504
18 C -0.128 4.128
19 C 0.101 3.899
20 N -0.476 5.476
21 C 0.168 3.832
22 C -0.213 4.213
23 S 0.105 5.895
24 C -0.174 4.174
25 C -0.116 4.116
26 C 0.015 3.985
27 C 0.127 3.873
28 H 0.075 0.925
29 C 0.155 3.845
30 H 0.252 0.748
31 H 0.021 0.979
32 H 0.055 0.945
33 H 0.060 0.940
34 H 0.056 0.944
35 H 0.083 0.917
36 H 0.085 0.915
37 H 0.175 0.825
38 H 0.163 0.837
39 H 0.175 0.825
40 H 0.171 0.829
41 H 0.127 0.873
42 H 0.027 0.973
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.637 -8.004 -14.617 17.057
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.550 5.550
2 C -0.191 4.191
3 Si 0.732 3.268
4 H -0.212 1.212
5 H -0.217 1.217
6 H -0.213 1.213
7 C -0.378 4.378
8 H 0.083 0.917
9 N -0.310 5.310
10 C 0.021 3.979
11 C -0.158 4.158
12 C -0.127 4.127
13 H 0.107 0.893
14 C -0.042 4.042
15 N -0.359 5.359
16 C 0.367 3.633
17 O -0.380 6.380
18 C -0.135 4.135
19 C -0.052 4.052
20 N -0.185 5.185
21 C 0.001 3.999
22 C -0.331 4.331
23 S 0.367 5.633
24 C -0.310 4.310
25 C -0.144 4.144
26 C -0.002 4.002
27 C 0.023 3.977
28 H 0.093 0.907
29 C 0.029 3.971
30 H 0.063 0.937
31 H 0.039 0.961
32 H 0.074 0.926
33 H 0.079 0.921
34 H 0.074 0.926
35 H 0.101 0.899
36 H 0.103 0.897
37 H 0.191 0.809
38 H 0.180 0.820
39 H 0.192 0.808
40 H 0.188 0.812
41 H 0.144 0.856
42 H 0.045 0.955
Dipole moment (debyes) X Y Z Total
from point charges 4.290 -7.433 -16.038 18.190
hybrid contribution -0.472 1.297 1.352 1.932
sum 3.818 -6.136 -14.686 16.368
Atomic orbital electron populations
1.69975 1.05051 1.25216 1.54781 1.24765 0.95301 0.97869 1.01151
0.86375 0.78845 0.83835 0.77747 1.21246 1.21662 1.21271 1.19128
0.92185 0.84700 1.41812 0.91667 1.43544 1.21856 1.00635 1.64948
1.20726 0.97104 0.87452 0.92652 1.21878 0.94249 0.99521 1.00155
1.22867 0.98476 0.97950 0.93417 0.89250 1.23813 1.01154 0.81361
0.97905 1.49718 1.56419 1.05013 1.24730 1.17288 0.80083 0.83884
0.82051 1.90823 1.54061 1.23031 1.70064 1.21050 1.01952 0.93333
0.97209 1.23422 0.93680 0.96255 0.91799 1.67746 1.10186 1.33454
1.07093 1.22310 0.94430 0.85169 0.98026 1.23828 1.07905 0.99963
1.01408 1.83990 1.58917 0.93877 1.26563 1.25553 1.03388 1.04101
0.97919 1.20406 1.01199 0.90759 1.02085 1.18294 0.95371 0.93868
0.92645 1.22766 0.94642 0.95807 0.84447 0.90710 1.20392 0.86987
0.98526 0.91171 0.93750 0.96135 0.92599 0.92111 0.92583 0.89916
0.89721 0.80881 0.81998 0.80805 0.81182 0.85572 0.95487
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 33.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.04 10.50 55.49 0.58 -26.46 16
2 C 0.01 0.19 5.02 -17.43 -0.09 0.11 16
3 Si 0.90 23.07 29.58 -169.99 -5.03 18.04 16
4 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16
6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
7 C -0.25 -7.03 9.66 -15.06 -0.15 -7.17 16
8 H 0.07 1.81 7.78 -52.48 -0.41 1.40 16
9 N -0.59 -14.75 3.04 -175.07 -0.53 -15.28 16
10 C 0.15 2.98 6.47 -3.93 -0.03 2.95 16
11 C -0.12 -1.92 5.66 -26.67 -0.15 -2.07 16
12 C -0.11 -1.58 4.39 -89.97 -0.40 -1.97 16
13 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16
14 C 0.08 1.03 5.82 -3.01 -0.02 1.01 16
15 N -0.62 -11.13 3.34 -175.29 -0.59 -11.71 16
16 C 0.58 11.69 7.92 -12.54 -0.10 11.59 16
17 O -0.50 -12.28 13.62 5.27 0.07 -12.20 16
18 C -0.13 -2.21 5.94 -104.21 -0.62 -2.83 16
19 C 0.10 1.45 10.27 -17.33 -0.18 1.28 16
20 N -0.48 -6.51 10.32 -12.88 -0.13 -6.65 16
21 C 0.17 2.08 11.20 -17.23 -0.19 1.88 16
22 C -0.21 -2.93 6.52 -38.48 -0.25 -3.18 16
23 S 0.10 1.18 23.29 -107.50 -2.50 -1.32 16
24 C -0.17 -2.26 11.10 28.82 0.32 -1.94 16
25 C -0.12 -1.91 9.44 -40.83 -0.39 -2.30 16
26 C 0.01 0.25 5.88 -106.74 -0.63 -0.38 16
27 C 0.13 2.36 4.23 -69.59 -0.29 2.07 16
28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16
29 C 0.16 3.78 4.67 -5.60 -0.03 3.76 16
30 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16
31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
32 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16
33 H 0.06 1.11 7.69 -51.93 -0.40 0.71 16
34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
35 H 0.08 0.95 6.28 -51.93 -0.33 0.63 16
36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16
37 H 0.17 2.12 3.90 -52.49 -0.20 1.91 16
38 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16
39 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16
40 H 0.17 3.27 6.32 -52.49 -0.33 2.93 16
41 H 0.13 3.60 4.26 -51.93 -0.22 3.38 16
42 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16
LS Contribution 346.45 15.07 5.22 5.22
Total: -1.00 -33.87 346.45 -10.89 -44.77
By element:
Atomic # 1 Polarization: 7.62 SS G_CDS: -4.81 Total: 2.81 kcal
Atomic # 6 Polarization: 5.97 SS G_CDS: -3.18 Total: 2.79 kcal
Atomic # 7 Polarization: -59.43 SS G_CDS: -0.67 Total: -60.10 kcal
Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.20 kcal
Atomic # 14 Polarization: 23.07 SS G_CDS: -5.03 Total: 18.04 kcal
Atomic # 16 Polarization: 1.18 SS G_CDS: -2.50 Total: -1.32 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -33.87 -10.89 -44.77 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084603148.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 155.428 kcal
(2) G-P(sol) polarization free energy of solvation -33.872 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.556 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.766 kcal
(6) G-S(sol) free energy of system = (1) + (5) 110.662 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.52 seconds