Wall clock time and date at job start Sat Apr 11 2020 06:48:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86802 * 119.99800 * 2 1
4 4 H 1.48504 * 109.46678 * 239.99973 * 3 2 1
5 5 H 1.48499 * 109.47250 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47262 * 120.00063 * 3 2 1
7 7 C 1.38804 * 119.99972 * 179.97438 * 2 1 3
8 8 H 1.08006 * 119.99755 * 195.05057 * 7 2 1
9 9 N 1.36941 * 120.00429 * 15.05348 * 7 2 1
10 10 C 1.46610 * 119.89163 * 197.61581 * 9 7 2
11 11 C 1.53109 * 108.00744 * 237.32263 * 10 9 7
12 12 C 1.53005 * 109.44665 * 301.02559 * 11 10 9
13 13 H 1.09002 * 113.42511 * 275.04111 * 12 11 10
14 14 C 1.54657 * 110.83861 * 143.89026 * 12 11 10
15 15 N 1.47803 * 85.79309 * 270.23166 * 14 12 11
16 16 C 1.34777 * 135.01578 * 153.82524 * 15 14 12
17 17 O 1.21609 * 120.00332 * 180.34527 * 16 15 14
18 18 C 1.47369 * 119.99617 * 0.34598 * 16 15 14
19 19 C 1.38758 * 120.55406 * 7.38151 * 18 16 15
20 20 N 1.31898 * 121.12343 * 179.97438 * 19 18 16
21 21 C 1.31670 * 122.21905 * 359.97438 * 20 19 18
22 22 C 1.39290 * 121.13669 * 0.02562 * 21 20 19
23 23 S 1.75879 * 131.39169 * 179.97438 * 22 21 20
24 24 C 1.75547 * 91.52540 * 179.97438 * 23 22 21
25 25 C 1.32487 * 110.79360 * 0.02562 * 24 23 22
26 26 C 1.40010 * 115.77740 * 359.74842 * 25 24 23
27 27 C 1.46825 * 89.97193 * 333.80548 * 15 14 12
28 28 H 1.08995 * 111.56120 * 274.47876 * 27 15 14
29 29 C 1.45683 * 119.88616 * 17.61347 * 9 7 2
30 30 H 0.96995 * 119.99647 * 0.02562 * 1 2 3
31 31 H 1.09001 * 109.75498 * 117.70029 * 10 9 7
32 32 H 1.08997 * 109.76069 * 356.95137 * 10 9 7
33 33 H 1.08998 * 109.47007 * 61.01719 * 11 10 9
34 34 H 1.09000 * 109.47545 * 181.02612 * 11 10 9
35 35 H 1.08998 * 113.81690 * 24.44880 * 14 12 11
36 36 H 1.08999 * 113.81917 * 156.00933 * 14 12 11
37 37 H 1.08000 * 119.44202 * 0.02562 * 19 18 16
38 38 H 1.08001 * 119.43545 * 180.02562 * 21 20 19
39 39 H 1.07999 * 124.60580 * 180.02562 * 24 23 22
40 40 H 1.07998 * 122.11096 * 180.02562 * 25 24 23
41 41 H 1.09001 * 108.71337 * 19.76732 * 29 9 7
42 42 H 1.08996 * 108.71310 * 261.74780 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1039 1.6964 -1.2126
5 1 1.2852 2.7465 -0.0006
6 1 3.1040 1.6965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0625 -1.2180 0.2434
9 7 1.3609 -2.3679 -0.3069
10 6 1.9591 -3.6556 0.0581
11 6 2.1163 -4.4838 -1.2200
12 6 0.7460 -4.6793 -1.8721
13 1 0.1897 -5.5244 -1.4665
14 6 0.8616 -4.6519 -3.4141
15 7 0.6465 -3.1944 -3.2955
16 6 0.9776 -2.1185 -4.0367
17 8 0.6568 -1.0046 -3.6689
18 6 1.7284 -2.2920 -5.2929
19 6 1.9681 -3.5603 -5.8020
20 7 2.6383 -3.7286 -6.9254
21 6 3.1116 -2.7144 -7.6191
22 6 2.9249 -1.4013 -7.1938
23 16 3.4305 0.1309 -7.8939
24 6 2.6852 1.0295 -6.5829
25 6 2.1158 0.2078 -5.7136
26 6 2.2162 -1.1569 -6.0099
27 6 -0.0779 -3.4045 -2.0358
28 1 -1.1306 -3.6260 -2.2112
29 6 0.0779 -2.3242 -0.9957
30 1 -0.4849 0.8400 -0.0004
31 1 1.3080 -4.1790 0.7584
32 1 2.9357 -3.4924 0.5137
33 1 2.7770 -3.9618 -1.9122
34 1 2.5433 -5.4558 -0.9731
35 1 1.8497 -4.9222 -3.7863
36 1 0.0541 -5.1759 -3.9254
37 1 1.5989 -4.4245 -5.2697
38 1 3.6539 -2.9040 -8.5337
39 1 2.6902 2.1061 -6.4967
40 1 1.6026 0.5681 -4.8343
41 1 -0.0257 -1.3537 -1.4810
42 1 -0.7183 -2.4306 -0.2589
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001084603148.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:34
Heat of formation + Delta-G solvation = 87.756814 kcal
Electronic energy + Delta-G solvation = -28448.854338 eV
Core-core repulsion = 24715.355713 eV
Total energy + Delta-G solvation = -3733.498625 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 343.110 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.23523 -41.20812 -38.97778 -37.47806 -36.98747 -34.08694 -33.07680 -31.88257
-31.44149 -30.24809 -28.69873 -26.04000 -25.69253 -25.45586 -24.21969 -22.84028
-21.94328 -21.61102 -19.76441 -19.21376 -18.64787 -18.01827 -17.44560 -17.35512
-16.85015 -16.68787 -16.23748 -15.78853 -15.50093 -15.45166 -15.19516 -14.98460
-14.75192 -14.59552 -14.29428 -14.03720 -13.73056 -13.51918 -13.36325 -13.19950
-13.09877 -12.78282 -12.65701 -12.37873 -12.23784 -12.07928 -12.01112 -11.74181
-11.49929 -11.20417 -11.06898 -11.00822 -10.63448 -10.24229 -10.19666 -9.56801
-8.93280 -8.74850 -7.82987 -5.21388 -0.88495 -0.36724 0.33023 0.67969
1.16381 1.32805 1.39706 1.43080 1.82525 1.85314 2.47186 2.69998
3.11868 3.28971 3.35888 3.46264 3.51970 3.63661 3.72770 3.91994
3.93496 4.02011 4.22700 4.23966 4.37459 4.47335 4.50746 4.58450
4.69123 4.73553 4.75191 4.81137 4.92834 5.00009 5.05161 5.09878
5.16345 5.29016 5.34074 5.44311 5.53996 5.71999 5.93688 6.42901
6.63350 6.83442 7.18743 7.23641 7.98030 8.33246 9.19372
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.010667 B = 0.005069 C = 0.003755
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2624.367779 B = 5522.152730 C = 7454.238890
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C -0.048 4.048
3 Si 0.953 3.047
4 H -0.293 1.293
5 H -0.294 1.294
6 H -0.269 1.269
7 C -0.253 4.253
8 H 0.064 0.936
9 N -0.605 5.605
10 C 0.138 3.862
11 C -0.108 4.108
12 C -0.095 4.095
13 H 0.133 0.867
14 C 0.093 3.907
15 N -0.630 5.630
16 C 0.567 3.433
17 O -0.569 6.569
18 C -0.165 4.165
19 C 0.118 3.882
20 N -0.482 5.482
21 C 0.186 3.814
22 C -0.234 4.234
23 S 0.197 5.803
24 C -0.163 4.163
25 C -0.162 4.162
26 C -0.010 4.010
27 C 0.112 3.888
28 H 0.093 0.907
29 C 0.166 3.834
30 H 0.242 0.758
31 H 0.032 0.968
32 H 0.050 0.950
33 H 0.037 0.963
34 H 0.102 0.898
35 H 0.103 0.897
36 H 0.128 0.872
37 H 0.196 0.804
38 H 0.207 0.793
39 H 0.198 0.802
40 H 0.126 0.874
41 H 0.079 0.921
42 H -0.008 1.008
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.741 -11.169 -17.680 21.686
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.243 4.243
3 Si 0.783 3.217
4 H -0.220 1.220
5 H -0.221 1.221
6 H -0.195 1.195
7 C -0.384 4.384
8 H 0.081 0.919
9 N -0.328 5.328
10 C 0.013 3.987
11 C -0.147 4.147
12 C -0.114 4.114
13 H 0.151 0.849
14 C -0.027 4.027
15 N -0.364 5.364
16 C 0.357 3.643
17 O -0.450 6.450
18 C -0.172 4.172
19 C -0.034 4.034
20 N -0.191 5.191
21 C 0.018 3.982
22 C -0.351 4.351
23 S 0.459 5.541
24 C -0.299 4.299
25 C -0.192 4.192
26 C -0.027 4.027
27 C 0.008 3.992
28 H 0.111 0.889
29 C 0.039 3.961
30 H 0.051 0.949
31 H 0.050 0.950
32 H 0.069 0.931
33 H 0.056 0.944
34 H 0.121 0.879
35 H 0.121 0.879
36 H 0.146 0.854
37 H 0.212 0.788
38 H 0.224 0.776
39 H 0.215 0.785
40 H 0.144 0.856
41 H 0.097 0.903
42 H 0.010 0.990
Dipole moment (debyes) X Y Z Total
from point charges 6.426 -10.691 -19.102 22.814
hybrid contribution -1.046 2.310 2.239 3.383
sum 5.380 -8.382 -16.863 19.584
Atomic orbital electron populations
1.70180 1.06215 1.24832 1.56547 1.25437 0.96021 1.00656 1.02164
0.85533 0.77739 0.80651 0.77784 1.22027 1.22063 1.19457 1.19426
0.92263 0.86296 1.40379 0.91869 1.43784 1.21946 1.01616 1.65474
1.20988 0.96543 0.85964 0.95211 1.21762 0.95239 1.00483 0.97206
1.22872 0.96869 0.96462 0.95168 0.84941 1.24111 1.03954 0.77924
0.96735 1.49895 1.55550 1.07075 1.23883 1.17917 0.79825 0.83568
0.83008 1.90794 1.56714 1.25575 1.71883 1.20915 1.04354 0.95043
0.96882 1.23654 0.92525 0.95480 0.91760 1.67887 1.10654 1.33704
1.06896 1.23061 0.92478 0.84163 0.98456 1.24163 1.08039 1.02092
1.00836 1.83626 1.56249 0.90842 1.23354 1.25969 1.00922 1.05377
0.97653 1.20191 1.04303 0.92112 1.02560 1.18484 0.96385 0.93687
0.94106 1.22724 0.96848 0.96005 0.83628 0.88933 1.19990 0.85790
0.98830 0.91446 0.94862 0.95044 0.93123 0.94398 0.87936 0.87902
0.85387 0.78803 0.77619 0.78479 0.85612 0.90257 0.99046
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -59.89 10.50 21.65 0.23 -59.66 16
2 C -0.05 -2.96 5.02 84.86 0.43 -2.53 16
3 Si 0.95 50.26 29.58 68.60 2.03 52.29 16
4 H -0.29 -15.61 7.11 99.48 0.71 -14.90 16
5 H -0.29 -15.53 7.11 99.48 0.71 -14.83 16
6 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16
7 C -0.25 -15.05 9.66 84.03 0.81 -14.24 16
8 H 0.06 3.67 7.78 -2.91 -0.02 3.65 16
9 N -0.60 -31.70 3.04 -707.81 -2.15 -33.85 16
10 C 0.14 5.52 6.47 86.39 0.56 6.08 16
11 C -0.11 -3.21 5.66 30.63 0.17 -3.04 16
12 C -0.09 -2.46 4.39 -10.32 -0.05 -2.50 16
13 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16
14 C 0.09 2.01 5.82 86.34 0.50 2.52 16
15 N -0.63 -22.52 3.34 -826.74 -2.76 -25.28 16
16 C 0.57 24.24 7.92 86.65 0.69 24.93 16
17 O -0.57 -30.75 13.62 -4.06 -0.06 -30.81 16
18 C -0.16 -5.78 5.94 -19.60 -0.12 -5.90 16
19 C 0.12 3.14 10.27 84.81 0.87 4.01 16
20 N -0.48 -11.58 10.32 -194.66 -2.01 -13.59 16
21 C 0.19 3.90 11.20 84.97 0.95 4.85 16
22 C -0.23 -5.94 6.52 22.98 0.15 -5.79 16
23 S 0.20 3.82 23.29 -56.49 -1.32 2.51 16
24 C -0.16 -4.19 11.10 66.69 0.74 -3.45 16
25 C -0.16 -5.77 9.44 21.57 0.20 -5.57 16
26 C -0.01 -0.34 5.88 -21.24 -0.12 -0.46 16
27 C 0.11 4.18 4.23 43.74 0.18 4.37 16
28 H 0.09 3.09 8.14 -2.39 -0.02 3.08 16
29 C 0.17 8.59 4.67 85.81 0.40 8.99 16
30 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16
31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16
32 H 0.05 2.03 7.84 -2.39 -0.02 2.01 16
33 H 0.04 1.31 7.69 -2.39 -0.02 1.29 16
34 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16
35 H 0.10 1.88 6.28 -2.39 -0.02 1.87 16
36 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16
37 H 0.20 4.06 3.90 -2.91 -0.01 4.04 16
38 H 0.21 2.39 8.06 -2.91 -0.02 2.36 16
39 H 0.20 3.86 8.06 -2.91 -0.02 3.84 16
40 H 0.13 5.57 6.32 -2.91 -0.02 5.56 16
41 H 0.08 4.93 4.26 -2.39 -0.01 4.92 16
42 H -0.01 -0.47 8.08 -2.39 -0.02 -0.49 16
Total: -1.00 -85.56 346.45 1.41 -84.15
By element:
Atomic # 1 Polarization: 10.91 SS G_CDS: 1.07 Total: 11.99 kcal
Atomic # 6 Polarization: 5.89 SS G_CDS: 6.37 Total: 12.26 kcal
Atomic # 7 Polarization: -125.70 SS G_CDS: -6.69 Total: -132.39 kcal
Atomic # 8 Polarization: -30.75 SS G_CDS: -0.06 Total: -30.81 kcal
Atomic # 14 Polarization: 50.26 SS G_CDS: 2.03 Total: 52.29 kcal
Atomic # 16 Polarization: 3.82 SS G_CDS: -1.32 Total: 2.51 kcal
Total: -85.56 1.41 -84.15 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084603148.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 171.909 kcal
(2) G-P(sol) polarization free energy of solvation -85.565 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.344 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.152 kcal
(6) G-S(sol) free energy of system = (1) + (5) 87.757 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds