Wall clock time and date at job start Sat Apr 11 2020 06:49:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17400 * 1
3 3 C 1.47209 * 179.97438 * 2 1
4 4 N 1.46493 * 109.46934 * 228.57283 * 3 2 1
5 5 C 1.36750 * 120.00285 * 270.00182 * 4 3 2
6 6 H 1.07996 * 120.00022 * 42.11036 * 5 4 3
7 7 C 1.39088 * 120.00129 * 222.11605 * 5 4 3
8 8 N 1.31343 * 120.00110 * 16.38185 * 7 5 4
9 9 Si 1.86804 * 119.99917 * 196.38294 * 7 5 4
10 10 H 1.48501 * 109.47127 * 60.00230 * 9 7 5
11 11 H 1.48498 * 109.46953 * 179.97438 * 9 7 5
12 12 H 1.48495 * 109.47142 * 299.99985 * 9 7 5
13 13 C 1.34775 * 120.00342 * 90.00147 * 4 3 2
14 14 O 1.21785 * 120.00636 * 175.30800 * 13 4 3
15 15 C 1.41799 * 119.99589 * 355.31218 * 13 4 3
16 16 C 1.35147 * 119.99729 * 184.27404 * 15 13 4
17 17 C 1.46950 * 119.99778 * 185.42225 * 16 15 13
18 18 C 1.39999 * 120.10768 * 354.97001 * 17 16 15
19 19 C 1.38080 * 119.86454 * 180.31991 * 18 17 16
20 20 O 1.36001 * 119.89055 * 179.73250 * 19 18 17
21 21 C 1.42902 * 117.00211 * 0.02562 * 20 19 18
22 22 C 1.39480 * 120.21725 * 359.75269 * 19 18 17
23 23 C 1.39120 * 120.07367 * 359.88846 * 22 19 18
24 24 C 1.38362 * 120.02437 * 0.11799 * 23 22 19
25 25 O 1.36157 * 120.75826 * 180.26929 * 23 22 19
26 26 C 1.43156 * 116.73041 * 342.81746 * 25 23 22
27 27 C 1.53471 * 108.23450 * 46.18239 * 26 25 23
28 28 O 1.36089 * 119.20281 * 179.79593 * 22 19 18
29 29 H 4.40634 * 5.51393 * 179.97438 * 4 1 2
30 30 H 1.08999 * 109.46641 * 108.57642 * 3 2 1
31 31 H 1.08995 * 109.47147 * 348.57275 * 3 2 1
32 32 H 0.97001 * 119.99850 * 184.89208 * 8 7 5
33 33 H 1.07994 * 119.99855 * 4.26695 * 15 13 4
34 34 H 1.08000 * 120.00313 * 5.42590 * 16 15 13
35 35 H 1.07994 * 120.06917 * 0.02562 * 18 17 16
36 36 H 1.08996 * 109.47324 * 179.97438 * 21 20 19
37 37 H 1.09001 * 109.46898 * 300.00233 * 21 20 19
38 38 H 1.08999 * 109.46828 * 59.99756 * 21 20 19
39 39 H 1.08003 * 119.98284 * 179.97438 * 24 23 22
40 40 H 1.09006 * 109.71109 * 165.86544 * 26 25 23
41 41 H 1.08998 * 109.71399 * 286.49214 * 26 25 23
42 42 H 1.08997 * 109.70856 * 59.88284 * 27 26 25
43 43 H 1.08996 * 109.71132 * 180.51957 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 7 3.1339 0.9147 1.0356
5 6 3.3612 2.2294 0.7354
6 1 2.6594 2.7718 0.1193
7 6 4.4964 2.8680 1.2235
8 7 5.4994 2.1595 1.6893
9 14 4.5943 4.7335 1.2166
10 1 3.4887 5.2902 2.0370
11 1 5.8970 5.1628 1.7856
12 1 4.4747 5.2302 -0.1777
13 6 3.3588 0.4601 2.2843
14 8 3.8447 1.1978 3.1227
15 6 3.0297 -0.8772 2.6218
16 6 3.1742 -1.3079 3.8946
17 6 2.9478 -2.7225 4.2217
18 6 2.4809 -3.6044 3.2397
19 6 2.2636 -4.9312 3.5543
20 8 1.8048 -5.7871 2.6021
21 6 1.5708 -5.2450 1.3008
22 6 2.5126 -5.3964 4.8454
23 6 2.9837 -4.5246 5.8218
24 6 3.2036 -3.1937 5.5138
25 8 3.2366 -4.9649 7.0851
26 6 2.6546 -6.2183 7.4588
27 6 2.9000 -7.2197 6.3219
28 8 2.2873 -6.7072 5.1339
29 1 -1.0501 0.0000 -0.0003
30 1 3.0092 0.3282 -0.9741
31 1 3.0099 -1.0064 0.2036
32 1 6.2604 2.6041 2.0945
33 1 2.6635 -1.5514 1.8618
34 1 3.4559 -0.6125 4.6714
35 1 2.2865 -3.2466 2.2395
36 1 1.2084 -6.0318 0.6392
37 1 0.8252 -4.4526 1.3661
38 1 2.5006 -4.8372 0.9046
39 1 3.5690 -2.5174 6.2724
40 1 3.1201 -6.5813 8.3752
41 1 1.5829 -6.0942 7.6144
42 1 3.9716 -7.3380 6.1612
43 1 2.4575 -8.1823 6.5780
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000491012490.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:52
Heat of formation + Delta-G solvation = -11.182310 kcal
Electronic energy + Delta-G solvation = -29320.887794 eV
Core-core repulsion = 25108.053224 eV
Total energy + Delta-G solvation = -4212.834570 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.130 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.36313 -39.40603 -38.67332 -37.42359 -36.81494 -34.82468 -33.33230 -32.41288
-31.30819 -30.54841 -29.92270 -28.27431 -27.31623 -26.52606 -25.44244 -24.53168
-22.64076 -21.95087 -20.53765 -18.99872 -18.60045 -17.94218 -17.69751 -17.34074
-16.97590 -16.24186 -15.93767 -15.73189 -15.32577 -15.13265 -14.97315 -14.85514
-14.42519 -14.32430 -14.02138 -13.94917 -13.48284 -13.16392 -12.78403 -12.59136
-12.48007 -12.38322 -12.16603 -11.77962 -11.43443 -11.38876 -11.22836 -11.05185
-10.98534 -10.90232 -10.68635 -10.61703 -10.34769 -9.97326 -9.67820 -9.02642
-8.90374 -8.22237 -8.14712 -7.52685 -7.23864 -6.13554 -3.91749 0.80720
1.34070 2.39711 2.88944 3.05665 3.20971 3.22369 3.30674 3.32125
3.36627 3.41478 3.81424 4.08458 4.30879 4.59587 4.67132 4.70997
4.73442 4.81208 4.92616 4.98227 5.06390 5.13697 5.15285 5.18878
5.24377 5.30087 5.33699 5.44740 5.48383 5.67922 5.92263 5.95142
6.06711 6.21745 6.26079 6.32385 6.43348 6.56345 6.74261 6.94536
7.03201 7.12293 7.48141 7.54728 8.09098 8.19532 8.94995 9.09287
9.55064 10.22476 10.90270
Molecular weight = 343.13amu
Principal moments of inertia in cm(-1)
A = 0.015478 B = 0.002867 C = 0.002513
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1808.544185 B = 9765.409567 C =11137.233735
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C -0.175 4.175
3 C 0.202 3.798
4 N -0.439 5.439
5 C -0.339 4.339
6 H 0.081 0.919
7 C 0.064 3.936
8 N -0.810 5.810
9 Si 0.913 3.087
10 H -0.275 1.275
11 H -0.285 1.285
12 H -0.277 1.277
13 C 0.484 3.516
14 O -0.524 6.524
15 C -0.148 4.148
16 C -0.087 4.087
17 C 0.006 3.994
18 C -0.202 4.202
19 C 0.140 3.860
20 O -0.307 6.307
21 C 0.024 3.976
22 C 0.007 3.993
23 C 0.088 3.912
24 C -0.139 4.139
25 O -0.303 6.303
26 C 0.020 3.980
27 C 0.020 3.980
28 O -0.297 6.297
29 H 0.210 0.790
30 H 0.096 0.904
31 H 0.081 0.919
32 H 0.267 0.733
33 H 0.109 0.891
34 H 0.135 0.865
35 H 0.142 0.858
36 H 0.100 0.900
37 H 0.058 0.942
38 H 0.058 0.942
39 H 0.140 0.860
40 H 0.120 0.880
41 H 0.077 0.923
42 H 0.075 0.925
43 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.645 -18.573 4.490 20.231
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.249 4.249
2 C -0.177 4.177
3 C 0.078 3.922
4 N -0.160 5.160
5 C -0.466 4.466
6 H 0.099 0.901
7 C -0.148 4.148
8 N -0.443 5.443
9 Si 0.740 3.260
10 H -0.200 1.200
11 H -0.210 1.210
12 H -0.202 1.202
13 C 0.276 3.724
14 O -0.403 6.403
15 C -0.169 4.169
16 C -0.108 4.108
17 C 0.005 3.995
18 C -0.221 4.221
19 C 0.094 3.906
20 O -0.220 6.220
21 C -0.071 4.071
22 C -0.039 4.039
23 C 0.043 3.957
24 C -0.158 4.158
25 O -0.217 6.217
26 C -0.056 4.056
27 C -0.056 4.056
28 O -0.212 6.212
29 H 0.227 0.773
30 H 0.114 0.886
31 H 0.099 0.901
32 H 0.077 0.923
33 H 0.127 0.873
34 H 0.153 0.847
35 H 0.159 0.841
36 H 0.118 0.882
37 H 0.077 0.923
38 H 0.077 0.923
39 H 0.158 0.842
40 H 0.138 0.862
41 H 0.095 0.905
42 H 0.093 0.907
43 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -6.169 -18.412 4.974 20.045
hybrid contribution -0.178 0.808 -0.082 0.831
sum -6.347 -17.604 4.892 19.342
Atomic orbital electron populations
1.24732 0.95735 1.02342 1.02089 1.24274 0.95423 0.98898 0.99063
1.18623 0.82871 0.95363 0.95299 1.43255 1.58394 1.08462 1.05863
1.19074 1.05516 0.85198 1.36818 0.90130 1.25242 0.93645 0.99326
0.96551 1.69870 1.05422 1.36650 1.32330 0.86263 0.77578 0.84079
0.78128 1.20012 1.21048 1.20213 1.16640 0.85357 0.87462 0.82977
1.90676 1.43392 1.58615 1.47601 1.22554 0.99952 0.97571 0.96806
1.22003 0.99347 0.91758 0.97667 1.18609 0.95750 0.93502 0.91594
1.21269 1.08198 0.91319 1.01344 1.17922 0.97476 0.88967 0.86228
1.86127 1.80356 1.36014 1.19517 1.23124 1.01324 1.00797 0.81896
1.18029 1.10173 0.84084 0.91579 1.18388 1.01394 0.92703 0.83259
1.20486 1.06052 0.92055 0.97197 1.86350 1.70696 1.37801 1.26884
1.23636 0.99989 0.83290 0.98692 1.23591 0.99520 0.97936 0.84563
1.86357 1.70112 1.21737 1.42967 0.77315 0.88607 0.90075 0.92270
0.87297 0.84697 0.84090 0.88177 0.92348 0.92312 0.84177 0.86183
0.90462 0.90686 0.86289
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.23 -3.64 19.25 29.55 0.57 -3.07 16
2 C -0.18 -3.16 13.61 -37.12 -0.51 -3.66 16
3 C 0.20 3.88 5.48 -6.83 -0.04 3.84 16
4 N -0.44 -10.87 2.47 -121.14 -0.30 -11.17 16
5 C -0.34 -9.19 9.27 -15.04 -0.14 -9.33 16
6 H 0.08 2.11 7.89 -52.49 -0.41 1.70 16
7 C 0.06 1.79 4.46 -17.44 -0.08 1.71 16
8 N -0.81 -23.66 11.20 55.50 0.62 -23.04 16
9 Si 0.91 21.55 29.59 -169.99 -5.03 16.52 16
10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
13 C 0.48 12.31 6.82 -14.90 -0.10 12.21 16
14 O -0.52 -15.43 13.32 5.11 0.07 -15.37 16
15 C -0.15 -2.99 8.42 -39.32 -0.33 -3.32 16
16 C -0.09 -1.62 9.40 -37.15 -0.35 -1.97 16
17 C 0.01 0.10 5.86 -105.09 -0.62 -0.52 16
18 C -0.20 -3.02 8.39 -38.98 -0.33 -3.34 16
19 C 0.14 2.08 6.69 -39.18 -0.26 1.82 16
20 O -0.31 -4.23 10.24 -35.18 -0.36 -4.59 16
21 C 0.02 0.23 9.81 101.05 0.99 1.22 16
22 C 0.01 0.10 6.52 -38.79 -0.25 -0.16 16
23 C 0.09 1.27 6.48 -39.21 -0.25 1.02 16
24 C -0.14 -2.11 9.70 -38.92 -0.38 -2.48 16
25 O -0.30 -3.86 10.41 -33.03 -0.34 -4.21 16
26 C 0.02 0.17 7.26 37.40 0.27 0.44 16
27 C 0.02 0.17 7.26 37.40 0.27 0.44 16
28 O -0.30 -3.98 10.16 -44.91 -0.46 -4.44 16
29 H 0.21 2.46 7.80 -54.09 -0.42 2.04 16
30 H 0.10 1.75 8.04 -51.93 -0.42 1.33 16
31 H 0.08 1.34 6.24 -51.93 -0.32 1.02 16
32 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16
33 H 0.11 1.87 4.17 -52.49 -0.22 1.65 16
34 H 0.14 2.67 7.48 -52.49 -0.39 2.28 16
35 H 0.14 1.91 4.39 -52.49 -0.23 1.68 16
36 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16
37 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16
38 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16
39 H 0.14 1.96 8.06 -52.48 -0.42 1.54 16
40 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16
41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
43 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16
LS Contribution 371.77 15.07 5.60 5.60
Total: -1.00 -35.67 371.77 -6.61 -42.28
By element:
Atomic # 1 Polarization: 8.44 SS G_CDS: -4.88 Total: 3.56 kcal
Atomic # 6 Polarization: -3.62 SS G_CDS: -1.53 Total: -5.15 kcal
Atomic # 7 Polarization: -34.54 SS G_CDS: 0.32 Total: -34.21 kcal
Atomic # 8 Polarization: -27.51 SS G_CDS: -1.09 Total: -28.60 kcal
Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -35.67 -6.61 -42.28 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000491012490.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.095 kcal
(2) G-P(sol) polarization free energy of solvation -35.667 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.572 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.182 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds