Wall clock time and date at job start Sat Apr 11 2020 06:49:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17400 * 1
3 3 C 1.47209 * 179.97438 * 2 1
4 4 N 1.46493 * 109.46934 * 228.57283 * 3 2 1
5 5 C 1.36750 * 120.00285 * 270.00182 * 4 3 2
6 6 H 1.07996 * 120.00022 * 42.11036 * 5 4 3
7 7 C 1.39088 * 120.00129 * 222.11605 * 5 4 3
8 8 N 1.31343 * 120.00110 * 16.38185 * 7 5 4
9 9 Si 1.86804 * 119.99917 * 196.38294 * 7 5 4
10 10 H 1.48501 * 109.47127 * 60.00230 * 9 7 5
11 11 H 1.48498 * 109.46953 * 179.97438 * 9 7 5
12 12 H 1.48495 * 109.47142 * 299.99985 * 9 7 5
13 13 C 1.34775 * 120.00342 * 90.00147 * 4 3 2
14 14 O 1.21785 * 120.00636 * 175.30800 * 13 4 3
15 15 C 1.41799 * 119.99589 * 355.31218 * 13 4 3
16 16 C 1.35147 * 119.99729 * 184.27404 * 15 13 4
17 17 C 1.46950 * 119.99778 * 185.42225 * 16 15 13
18 18 C 1.39999 * 120.10768 * 354.97001 * 17 16 15
19 19 C 1.38080 * 119.86454 * 180.31991 * 18 17 16
20 20 O 1.36001 * 119.89055 * 179.73250 * 19 18 17
21 21 C 1.42902 * 117.00211 * 0.02562 * 20 19 18
22 22 C 1.39480 * 120.21725 * 359.75269 * 19 18 17
23 23 C 1.39120 * 120.07367 * 359.88846 * 22 19 18
24 24 C 1.38362 * 120.02437 * 0.11799 * 23 22 19
25 25 O 1.36157 * 120.75826 * 180.26929 * 23 22 19
26 26 C 1.43156 * 116.73041 * 342.81746 * 25 23 22
27 27 C 1.53471 * 108.23450 * 46.18239 * 26 25 23
28 28 O 1.36089 * 119.20281 * 179.79593 * 22 19 18
29 29 H 4.40634 * 5.51393 * 179.97438 * 4 1 2
30 30 H 1.08999 * 109.46641 * 108.57642 * 3 2 1
31 31 H 1.08995 * 109.47147 * 348.57275 * 3 2 1
32 32 H 0.97001 * 119.99850 * 184.89208 * 8 7 5
33 33 H 1.07994 * 119.99855 * 4.26695 * 15 13 4
34 34 H 1.08000 * 120.00313 * 5.42590 * 16 15 13
35 35 H 1.07994 * 120.06917 * 0.02562 * 18 17 16
36 36 H 1.08996 * 109.47324 * 179.97438 * 21 20 19
37 37 H 1.09001 * 109.46898 * 300.00233 * 21 20 19
38 38 H 1.08999 * 109.46828 * 59.99756 * 21 20 19
39 39 H 1.08003 * 119.98284 * 179.97438 * 24 23 22
40 40 H 1.09006 * 109.71109 * 165.86544 * 26 25 23
41 41 H 1.08998 * 109.71399 * 286.49214 * 26 25 23
42 42 H 1.08997 * 109.70856 * 59.88284 * 27 26 25
43 43 H 1.08996 * 109.71132 * 180.51957 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 7 3.1339 0.9147 1.0356
5 6 3.3612 2.2294 0.7354
6 1 2.6594 2.7718 0.1193
7 6 4.4964 2.8680 1.2235
8 7 5.4994 2.1595 1.6893
9 14 4.5943 4.7335 1.2166
10 1 3.4887 5.2902 2.0370
11 1 5.8970 5.1628 1.7856
12 1 4.4747 5.2302 -0.1777
13 6 3.3588 0.4601 2.2843
14 8 3.8447 1.1978 3.1227
15 6 3.0297 -0.8772 2.6218
16 6 3.1742 -1.3079 3.8946
17 6 2.9478 -2.7225 4.2217
18 6 2.4809 -3.6044 3.2397
19 6 2.2636 -4.9312 3.5543
20 8 1.8048 -5.7871 2.6021
21 6 1.5708 -5.2450 1.3008
22 6 2.5126 -5.3964 4.8454
23 6 2.9837 -4.5246 5.8218
24 6 3.2036 -3.1937 5.5138
25 8 3.2366 -4.9649 7.0851
26 6 2.6546 -6.2183 7.4588
27 6 2.9000 -7.2197 6.3219
28 8 2.2873 -6.7072 5.1339
29 1 -1.0501 0.0000 -0.0003
30 1 3.0092 0.3282 -0.9741
31 1 3.0099 -1.0064 0.2036
32 1 6.2604 2.6041 2.0945
33 1 2.6635 -1.5514 1.8618
34 1 3.4559 -0.6125 4.6714
35 1 2.2865 -3.2466 2.2395
36 1 1.2084 -6.0318 0.6392
37 1 0.8252 -4.4526 1.3661
38 1 2.5006 -4.8372 0.9046
39 1 3.5690 -2.5174 6.2724
40 1 3.1201 -6.5813 8.3752
41 1 1.5829 -6.0942 7.6144
42 1 3.9716 -7.3380 6.1612
43 1 2.4575 -8.1823 6.5780
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000491012490.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:51
Heat of formation + Delta-G solvation = -33.621779 kcal
Electronic energy + Delta-G solvation = -29321.860843 eV
Core-core repulsion = 25108.053224 eV
Total energy + Delta-G solvation = -4213.807618 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.130 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.36373 -40.61606 -40.26152 -38.50498 -37.87001 -36.58272 -34.88584 -33.99276
-32.94910 -31.56600 -31.06228 -29.37306 -28.39340 -28.07699 -26.86051 -25.80665
-24.03676 -23.08789 -21.79603 -20.36024 -19.79363 -19.37791 -18.78481 -18.54582
-18.32854 -17.70491 -17.19386 -16.84730 -16.81227 -16.30176 -15.99423 -15.92314
-15.76141 -15.68237 -15.38543 -15.26001 -14.84208 -14.27347 -14.14580 -14.10472
-14.03641 -13.53284 -13.40679 -13.25742 -12.78555 -12.77846 -12.66428 -12.48133
-12.32586 -12.23765 -12.16514 -11.85558 -11.53181 -11.42620 -11.03275 -10.84905
-10.39149 -10.11906 -9.32097 -9.23352 -8.76674 -8.17480 -6.00472 -0.50046
0.21095 1.00861 1.40071 1.47426 1.51306 1.87066 1.95109 2.01375
2.12963 2.32154 2.40745 2.58403 2.96864 3.24077 3.32846 3.35350
3.63714 3.73638 3.74566 3.86186 3.99807 4.07311 4.13075 4.20124
4.25362 4.40295 4.41313 4.48210 4.56794 4.61710 4.67965 4.75721
4.78275 4.84893 4.89913 5.03849 5.19156 5.31379 5.42283 5.51967
5.59466 5.79178 6.11341 6.18271 6.46353 6.79761 6.97714 7.16946
7.60939 8.31287 8.86155
Molecular weight = 343.13amu
Principal moments of inertia in cm(-1)
A = 0.015478 B = 0.002867 C = 0.002513
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1808.544185 B = 9765.409567 C =11137.233735
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.226 4.226
3 C 0.203 3.797
4 N -0.455 5.455
5 C -0.360 4.360
6 H 0.081 0.919
7 C 0.016 3.984
8 N -0.851 5.851
9 Si 0.971 3.029
10 H -0.282 1.282
11 H -0.286 1.286
12 H -0.255 1.255
13 C 0.478 3.522
14 O -0.580 6.580
15 C -0.174 4.174
16 C -0.053 4.053
17 C -0.016 4.016
18 C -0.194 4.194
19 C 0.131 3.869
20 O -0.318 6.318
21 C 0.013 3.987
22 C 0.010 3.990
23 C 0.085 3.915
24 C -0.141 4.141
25 O -0.315 6.315
26 C 0.013 3.987
27 C 0.012 3.988
28 O -0.312 6.312
29 H 0.250 0.750
30 H 0.097 0.903
31 H 0.104 0.896
32 H 0.260 0.740
33 H 0.140 0.860
34 H 0.117 0.883
35 H 0.154 0.846
36 H 0.126 0.874
37 H 0.064 0.936
38 H 0.063 0.937
39 H 0.145 0.855
40 H 0.158 0.842
41 H 0.083 0.917
42 H 0.078 0.922
43 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.498 -21.158 4.595 23.259
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.227 4.227
3 C 0.081 3.919
4 N -0.175 5.175
5 C -0.488 4.488
6 H 0.099 0.901
7 C -0.192 4.192
8 N -0.485 5.485
9 Si 0.796 3.204
10 H -0.208 1.208
11 H -0.212 1.212
12 H -0.179 1.179
13 C 0.271 3.729
14 O -0.463 6.463
15 C -0.195 4.195
16 C -0.074 4.074
17 C -0.017 4.017
18 C -0.212 4.212
19 C 0.085 3.915
20 O -0.232 6.232
21 C -0.081 4.081
22 C -0.036 4.036
23 C 0.039 3.961
24 C -0.160 4.160
25 O -0.230 6.230
26 C -0.062 4.062
27 C -0.062 4.062
28 O -0.227 6.227
29 H 0.266 0.734
30 H 0.115 0.885
31 H 0.122 0.878
32 H 0.069 0.931
33 H 0.158 0.842
34 H 0.135 0.865
35 H 0.171 0.829
36 H 0.144 0.856
37 H 0.083 0.917
38 H 0.082 0.918
39 H 0.162 0.838
40 H 0.176 0.824
41 H 0.101 0.899
42 H 0.097 0.903
43 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -8.050 -21.032 5.035 23.075
hybrid contribution 0.238 1.260 0.046 1.283
sum -7.812 -19.772 5.080 21.858
Atomic orbital electron populations
1.25639 0.96527 0.99590 0.99279 1.24125 0.95582 1.01425 1.01608
1.18658 0.84161 0.95309 0.93768 1.43429 1.58502 1.08636 1.06949
1.19296 1.05410 0.87033 1.37022 0.90101 1.26077 0.93434 1.03395
0.96257 1.69985 1.06032 1.37990 1.34511 0.85360 0.76890 0.79221
0.78939 1.20772 1.21208 1.17900 1.17397 0.83850 0.88910 0.82746
1.90626 1.45915 1.60490 1.49290 1.22309 1.03105 0.95872 0.98164
1.22051 0.95772 0.92895 0.96648 1.18418 0.98375 0.92160 0.92727
1.21340 1.07174 0.91247 1.01465 1.18036 0.97631 0.89012 0.86869
1.86122 1.80104 1.36317 1.20630 1.23437 1.01919 1.02147 0.80565
1.18245 1.08762 0.84930 0.91638 1.18360 1.01155 0.92381 0.84211
1.20593 1.05566 0.92845 0.96948 1.86335 1.71023 1.39890 1.25771
1.24044 1.00715 0.81452 0.99947 1.24000 0.99992 0.99303 0.82937
1.86336 1.70520 1.20793 1.45068 0.73397 0.88490 0.87824 0.93073
0.84221 0.86536 0.82866 0.85555 0.91733 0.91800 0.83771 0.82438
0.89882 0.90329 0.82568
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -5.54 19.25 74.32 1.43 -4.11 16
2 C -0.23 -7.87 13.61 31.13 0.42 -7.45 16
3 C 0.20 7.83 5.48 84.58 0.46 8.30 16
4 N -0.46 -23.19 2.47 -655.35 -1.62 -24.81 16
5 C -0.36 -20.15 9.27 84.13 0.78 -19.37 16
6 H 0.08 4.36 7.89 -2.91 -0.02 4.34 16
7 C 0.02 0.92 4.46 84.97 0.38 1.30 16
8 N -0.85 -52.10 11.20 21.69 0.24 -51.86 16
9 Si 0.97 45.67 29.59 68.60 2.03 47.70 16
10 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16
11 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16
12 H -0.25 -10.93 7.11 99.48 0.71 -10.22 16
13 C 0.48 25.23 6.82 85.12 0.58 25.81 16
14 O -0.58 -36.00 13.32 -4.62 -0.06 -36.06 16
15 C -0.17 -7.14 8.42 22.44 0.19 -6.95 16
16 C -0.05 -2.00 9.40 23.84 0.22 -1.78 16
17 C -0.02 -0.52 5.86 -20.17 -0.12 -0.64 16
18 C -0.19 -5.51 8.39 22.66 0.19 -5.32 16
19 C 0.13 3.68 6.69 22.53 0.15 3.83 16
20 O -0.32 -8.10 10.24 -78.81 -0.81 -8.90 16
21 C 0.01 0.23 9.81 113.37 1.11 1.34 16
22 C 0.01 0.28 6.52 22.78 0.15 0.43 16
23 C 0.08 2.35 6.48 22.51 0.15 2.49 16
24 C -0.14 -4.20 9.70 22.70 0.22 -3.98 16
25 O -0.32 -7.43 10.41 -83.11 -0.87 -8.30 16
26 C 0.01 0.18 7.26 72.14 0.52 0.70 16
27 C 0.01 0.17 7.26 72.14 0.52 0.70 16
28 O -0.31 -7.62 10.16 -70.77 -0.72 -8.34 16
29 H 0.25 4.72 7.80 -4.41 -0.03 4.68 16
30 H 0.10 3.60 8.04 -2.39 -0.02 3.58 16
31 H 0.10 3.38 6.24 -2.39 -0.01 3.37 16
32 H 0.26 15.46 8.31 -92.71 -0.77 14.68 16
33 H 0.14 4.71 4.17 -2.91 -0.01 4.70 16
34 H 0.12 4.85 7.48 -2.91 -0.02 4.83 16
35 H 0.15 3.86 4.39 -2.91 -0.01 3.84 16
36 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16
37 H 0.06 1.04 7.65 -2.39 -0.02 1.02 16
38 H 0.06 1.04 7.65 -2.39 -0.02 1.02 16
39 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16
40 H 0.16 0.96 8.14 -2.38 -0.02 0.94 16
41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16
42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16
43 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16
Total: -1.00 -81.85 371.77 6.62 -75.22
By element:
Atomic # 1 Polarization: 18.99 SS G_CDS: 1.05 Total: 20.05 kcal
Atomic # 6 Polarization: -12.06 SS G_CDS: 7.37 Total: -4.70 kcal
Atomic # 7 Polarization: -75.29 SS G_CDS: -1.38 Total: -76.67 kcal
Atomic # 8 Polarization: -59.15 SS G_CDS: -2.45 Total: -61.60 kcal
Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal
Total: -81.85 6.62 -75.22 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000491012490.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.603 kcal
(2) G-P(sol) polarization free energy of solvation -81.845 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.242 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.620 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.225 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.622 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds