Wall clock time and date at job start Sat Apr 11 2020 06:49:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09003 * 109.46813 * 2 1
4 4 C 1.52996 * 109.47194 * 120.00416 * 2 1 3
5 5 C 1.53002 * 109.47140 * 185.00206 * 4 2 1
6 6 H 1.08991 * 109.46843 * 304.99457 * 5 4 2
7 7 C 1.53003 * 109.46967 * 184.99372 * 5 4 2
8 8 N 1.46503 * 109.47281 * 64.99784 * 5 4 2
9 9 C 1.34775 * 119.99954 * 205.00267 * 8 5 4
10 10 O 1.21277 * 119.99856 * 359.97438 * 9 8 5
11 11 C 1.50698 * 120.00040 * 179.97438 * 9 8 5
12 12 S 1.80998 * 109.47389 * 179.97438 * 11 9 8
13 13 C 1.76195 * 100.00377 * 180.02562 * 12 11 9
14 14 H 1.08002 * 119.99972 * 359.97438 * 13 12 11
15 15 C 1.38798 * 120.00023 * 180.02562 * 13 12 11
16 16 N 1.31632 * 119.99705 * 179.97438 * 15 13 12
17 17 Si 1.86796 * 120.00096 * 359.97438 * 15 13 12
18 18 H 1.48505 * 109.46988 * 90.00366 * 17 15 13
19 19 H 1.48494 * 109.47322 * 209.99914 * 17 15 13
20 20 H 1.48501 * 109.47269 * 330.00471 * 17 15 13
21 21 N 1.46905 * 109.47102 * 240.00077 * 2 1 3
22 22 C 1.46901 * 110.99870 * 85.00132 * 21 2 1
23 23 C 1.50697 * 109.46943 * 180.02562 * 22 21 2
24 24 N 1.29028 * 124.91760 * 89.69464 * 23 22 21
25 25 C 1.31786 * 117.11979 * 179.80941 * 24 23 22
26 26 C 1.33633 * 114.50341 * 0.47857 * 25 24 23
27 27 S 1.70980 * 124.91445 * 269.99561 * 23 22 21
28 28 H 1.09000 * 109.46959 * 179.97438 * 1 2 3
29 29 H 1.08999 * 109.47105 * 300.00114 * 1 2 3
30 30 H 1.08996 * 109.46950 * 59.99838 * 1 2 3
31 31 H 1.09006 * 109.47142 * 304.99743 * 4 2 1
32 32 H 1.08991 * 109.47453 * 64.99824 * 4 2 1
33 33 H 1.09002 * 109.46783 * 60.00279 * 7 5 4
34 34 H 1.08998 * 109.47033 * 179.97438 * 7 5 4
35 35 H 1.08999 * 109.47109 * 299.99901 * 7 5 4
36 36 H 0.97003 * 120.00039 * 24.99895 * 8 5 4
37 37 H 1.09002 * 109.46896 * 299.99512 * 11 9 8
38 38 H 1.08995 * 109.47229 * 59.99700 * 11 9 8
39 39 H 0.97002 * 120.00000 * 179.97438 * 16 15 13
40 40 H 1.00901 * 110.99869 * 321.04843 * 21 2 1
41 41 H 1.09004 * 109.47031 * 299.99620 * 22 21 2
42 42 H 1.08995 * 109.47111 * 59.99900 * 22 21 2
43 43 H 1.08006 * 122.74908 * 180.22179 * 25 24 23
44 44 H 1.08005 * 126.04031 * 179.71479 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 1.2491
5 6 3.5649 -0.6133 1.3136
6 1 3.9954 -0.9922 0.3868
7 6 4.0852 -1.4383 2.4925
8 7 3.9480 0.7894 1.4924
9 6 5.1612 1.2136 1.0867
10 8 5.9359 0.4340 0.5740
11 6 5.5551 2.6565 1.2701
12 16 7.2293 2.9109 0.6311
13 6 7.4262 4.6298 0.9644
14 1 6.6263 5.1842 1.4326
15 6 8.6089 5.2717 0.6241
16 7 8.7558 6.5560 0.8726
17 14 9.9921 4.3130 -0.1865
18 1 9.8309 4.3634 -1.6619
19 1 11.2971 4.9135 0.1895
20 1 9.9479 2.9001 0.2683
21 7 2.0197 -0.6925 -1.1995
22 6 2.0825 0.2226 -2.3469
23 6 2.5874 -0.5218 -3.5560
24 7 1.8413 -1.1464 -4.4034
25 6 2.4463 -1.7442 -5.4101
26 6 3.7773 -1.6252 -5.4064
27 16 4.2322 -0.6670 -3.9995
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 1.6054 -0.2618 2.1370
32 1 1.7517 -1.7715 1.2055
33 1 3.8001 -2.4819 2.3594
34 1 5.1715 -1.3617 2.5381
35 1 3.6546 -1.0593 3.4193
36 1 3.3285 1.4129 1.9028
37 1 4.8579 3.2952 0.7277
38 1 5.5291 2.9083 2.3303
39 1 9.5824 7.0045 0.6352
40 1 1.4495 -1.4979 -1.4101
41 1 1.0871 0.6163 -2.5526
42 1 2.7589 1.0462 -2.1182
43 1 1.9106 -2.2894 -6.1732
44 1 4.4547 -2.0430 -6.1366
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001133735651.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:42
Heat of formation + Delta-G solvation = -1.794718 kcal
Electronic energy + Delta-G solvation = -25070.258881 eV
Core-core repulsion = 21468.320961 eV
Total energy + Delta-G solvation = -3601.937920 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 343.113 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-39.87398 -39.49063 -37.82900 -35.31095 -32.63371 -32.42085 -31.27793 -29.69864
-28.57816 -27.05228 -26.56281 -25.59274 -23.61058 -21.88126 -21.01108 -20.22384
-20.02681 -18.28460 -17.81844 -16.55430 -16.22222 -15.94985 -15.74116 -15.09188
-15.01129 -14.89697 -14.66873 -14.37429 -13.94258 -13.80654 -13.61423 -13.25082
-13.06236 -12.90010 -12.77956 -12.71621 -12.39710 -12.29863 -11.98593 -11.93339
-11.52446 -11.30818 -11.23778 -11.06982 -10.99431 -10.82405 -10.54889 -9.83799
-9.82486 -9.55869 -9.37824 -9.08436 -8.99177 -8.82760 -8.71019 -8.46690
-6.88779 -6.27567 -3.98537 0.53558 1.26820 1.69225 2.61988 2.82918
3.09804 3.33481 3.39447 3.52014 3.70479 3.76539 4.12542 4.34638
4.40525 4.70368 4.73646 4.79446 4.92589 5.00942 5.09013 5.11634
5.12694 5.20502 5.29355 5.33131 5.35492 5.40855 5.45384 5.57007
5.63323 5.71139 5.78754 5.80911 5.84203 5.96691 6.05210 6.20294
6.32107 6.60640 6.76795 7.03472 7.53976 7.75402 7.95616 8.43059
8.63241 9.18953 10.81765
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.009408 B = 0.003269 C = 0.002677
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2975.398516 B = 8562.812423 C =10458.292268
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.083 3.917
3 H 0.085 0.915
4 C -0.113 4.113
5 C 0.147 3.853
6 H 0.102 0.898
7 C -0.164 4.164
8 N -0.731 5.731
9 C 0.531 3.469
10 O -0.517 6.517
11 C -0.125 4.125
12 S -0.141 6.141
13 C -0.521 4.521
14 H 0.087 0.913
15 C 0.095 3.905
16 N -0.882 5.882
17 Si 0.856 3.144
18 H -0.267 1.267
19 H -0.275 1.275
20 H -0.235 1.235
21 N -0.673 5.673
22 C 0.136 3.864
23 C 0.042 3.958
24 N -0.479 5.479
25 C 0.033 3.967
26 C -0.272 4.272
27 S 0.180 5.820
28 H 0.058 0.942
29 H 0.064 0.936
30 H 0.055 0.945
31 H 0.070 0.930
32 H 0.077 0.923
33 H 0.060 0.940
34 H 0.062 0.938
35 H 0.051 0.949
36 H 0.394 0.606
37 H 0.093 0.907
38 H 0.094 0.906
39 H 0.270 0.730
40 H 0.346 0.654
41 H 0.061 0.939
42 H 0.096 0.904
43 H 0.172 0.828
44 H 0.175 0.825
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.165 -17.073 -4.949 25.416
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C -0.027 4.027
3 H 0.103 0.897
4 C -0.151 4.151
5 C 0.043 3.957
6 H 0.120 0.880
7 C -0.223 4.223
8 N -0.385 5.385
9 C 0.316 3.684
10 O -0.391 6.391
11 C -0.275 4.275
12 S 0.085 5.915
13 C -0.668 4.668
14 H 0.105 0.895
15 C -0.113 4.113
16 N -0.518 5.518
17 Si 0.681 3.319
18 H -0.192 1.192
19 H -0.200 1.200
20 H -0.159 1.159
21 N -0.305 5.305
22 C 0.004 3.996
23 C -0.235 4.235
24 N -0.195 5.195
25 C -0.119 4.119
26 C -0.412 4.412
27 S 0.434 5.566
28 H 0.077 0.923
29 H 0.083 0.917
30 H 0.074 0.926
31 H 0.089 0.911
32 H 0.096 0.904
33 H 0.079 0.921
34 H 0.081 0.919
35 H 0.071 0.929
36 H 0.227 0.773
37 H 0.112 0.888
38 H 0.113 0.887
39 H 0.080 0.920
40 H 0.164 0.836
41 H 0.079 0.921
42 H 0.114 0.886
43 H 0.189 0.811
44 H 0.193 0.807
Dipole moment (debyes) X Y Z Total
from point charges -15.714 -17.768 -5.137 24.269
hybrid contribution -1.936 0.695 -0.526 2.123
sum -17.649 -17.073 -5.663 25.200
Atomic orbital electron populations
1.22512 0.96945 1.02290 1.02464 1.21621 0.92404 0.98680 0.90005
0.89715 1.21879 0.95063 1.01612 0.96573 1.20871 0.93627 0.81311
0.99919 0.87960 1.22197 1.02373 0.99561 0.98143 1.46070 1.17191
1.10888 1.64339 1.20188 0.81210 0.89699 0.77280 1.90694 1.50314
1.56148 1.41924 1.23290 1.03633 0.95222 1.05402 1.84778 1.12181
1.13713 1.80785 1.22332 1.05820 0.91761 1.46924 0.89481 1.24712
0.97792 0.94458 0.94353 1.69942 1.27058 1.08857 1.45978 0.86742
0.81686 0.82623 0.80859 1.19218 1.20006 1.15867 1.60556 1.57878
1.09401 1.02692 1.20441 1.00626 0.93655 0.84841 1.26906 0.93949
1.02203 1.00481 1.66288 1.38954 1.10527 1.03685 1.21715 0.91113
1.01389 0.97733 1.27259 1.00125 1.09086 1.04745 1.84666 1.09095
1.45301 1.17498 0.92316 0.91728 0.92581 0.91110 0.90433 0.92146
0.91918 0.92939 0.77252 0.88840 0.88724 0.91983 0.83572 0.92120
0.88584 0.81078 0.80723
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.14 9.16 37.16 0.34 -0.80 16
2 C 0.08 0.62 2.53 -67.71 -0.17 0.45 16
3 H 0.08 0.71 7.28 -51.93 -0.38 0.34 16
4 C -0.11 -0.83 4.43 -26.73 -0.12 -0.95 16
5 C 0.15 1.58 2.52 -67.93 -0.17 1.41 16
6 H 0.10 1.39 7.05 -51.93 -0.37 1.03 16
7 C -0.16 -1.74 9.48 37.16 0.35 -1.38 16
8 N -0.73 -8.72 4.45 -53.81 -0.24 -8.96 16
9 C 0.53 9.06 7.81 -10.99 -0.09 8.97 16
10 O -0.52 -10.81 15.52 5.56 0.09 -10.72 16
11 C -0.12 -2.36 6.16 36.00 0.22 -2.14 16
12 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16
13 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16
14 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16
15 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16
16 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16
17 Si 0.86 21.73 27.74 -169.99 -4.71 17.02 16
18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16
19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16
20 H -0.23 -5.95 6.74 56.52 0.38 -5.57 16
21 N -0.67 -6.00 5.61 -107.99 -0.61 -6.61 16
22 C 0.14 1.34 6.06 -4.98 -0.03 1.31 16
23 C 0.04 0.47 6.90 -13.46 -0.09 0.38 16
24 N -0.48 -5.57 10.54 -11.86 -0.13 -5.69 16
25 C 0.03 0.32 11.35 -19.18 -0.22 0.11 16
26 C -0.27 -2.58 11.37 29.12 0.33 -2.25 16
27 S 0.18 2.07 23.18 -107.50 -2.49 -0.43 16
28 H 0.06 0.35 8.13 -51.93 -0.42 -0.08 16
29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
30 H 0.06 0.37 7.45 -51.93 -0.39 -0.01 16
31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16
32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16
34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
36 H 0.39 3.64 8.60 -40.82 -0.35 3.28 16
37 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16
38 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16
39 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16
40 H 0.35 2.94 8.46 -39.29 -0.33 2.61 16
41 H 0.06 0.55 7.44 -51.93 -0.39 0.17 16
42 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16
43 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16
44 H 0.18 1.20 8.06 -52.48 -0.42 0.78 16
LS Contribution 393.89 15.07 5.94 5.94
Total: -1.00 -34.04 393.89 -9.65 -43.69
By element:
Atomic # 1 Polarization: 10.74 SS G_CDS: -6.85 Total: 3.89 kcal
Atomic # 6 Polarization: -7.37 SS G_CDS: 0.57 Total: -6.80 kcal
Atomic # 7 Polarization: -46.86 SS G_CDS: -0.20 Total: -47.06 kcal
Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal
Atomic # 16 Polarization: -1.46 SS G_CDS: -4.49 Total: -5.95 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -34.04 -9.65 -43.69 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001133735651.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.892 kcal
(2) G-P(sol) polarization free energy of solvation -34.040 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.853 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds