Wall clock time and date at job start Sat Apr 11 2020 06:49:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09003 * 109.46813 * 2 1
4 4 C 1.52996 * 109.47194 * 120.00416 * 2 1 3
5 5 C 1.53002 * 109.47140 * 185.00206 * 4 2 1
6 6 H 1.08991 * 109.46843 * 304.99457 * 5 4 2
7 7 C 1.53003 * 109.46967 * 184.99372 * 5 4 2
8 8 N 1.46503 * 109.47281 * 64.99784 * 5 4 2
9 9 C 1.34775 * 119.99954 * 205.00267 * 8 5 4
10 10 O 1.21277 * 119.99856 * 359.97438 * 9 8 5
11 11 C 1.50698 * 120.00040 * 179.97438 * 9 8 5
12 12 S 1.80998 * 109.47389 * 179.97438 * 11 9 8
13 13 C 1.76195 * 100.00377 * 180.02562 * 12 11 9
14 14 H 1.08002 * 119.99972 * 359.97438 * 13 12 11
15 15 C 1.38798 * 120.00023 * 180.02562 * 13 12 11
16 16 N 1.31632 * 119.99705 * 179.97438 * 15 13 12
17 17 Si 1.86796 * 120.00096 * 359.97438 * 15 13 12
18 18 H 1.48505 * 109.46988 * 90.00366 * 17 15 13
19 19 H 1.48494 * 109.47322 * 209.99914 * 17 15 13
20 20 H 1.48501 * 109.47269 * 330.00471 * 17 15 13
21 21 N 1.46905 * 109.47102 * 240.00077 * 2 1 3
22 22 C 1.46901 * 110.99870 * 85.00132 * 21 2 1
23 23 C 1.50697 * 109.46943 * 180.02562 * 22 21 2
24 24 N 1.29028 * 124.91760 * 89.69464 * 23 22 21
25 25 C 1.31786 * 117.11979 * 179.80941 * 24 23 22
26 26 C 1.33633 * 114.50341 * 0.47857 * 25 24 23
27 27 S 1.70980 * 124.91445 * 269.99561 * 23 22 21
28 28 H 1.09000 * 109.46959 * 179.97438 * 1 2 3
29 29 H 1.08999 * 109.47105 * 300.00114 * 1 2 3
30 30 H 1.08996 * 109.46950 * 59.99838 * 1 2 3
31 31 H 1.09006 * 109.47142 * 304.99743 * 4 2 1
32 32 H 1.08991 * 109.47453 * 64.99824 * 4 2 1
33 33 H 1.09002 * 109.46783 * 60.00279 * 7 5 4
34 34 H 1.08998 * 109.47033 * 179.97438 * 7 5 4
35 35 H 1.08999 * 109.47109 * 299.99901 * 7 5 4
36 36 H 0.97003 * 120.00039 * 24.99895 * 8 5 4
37 37 H 1.09002 * 109.46896 * 299.99512 * 11 9 8
38 38 H 1.08995 * 109.47229 * 59.99700 * 11 9 8
39 39 H 0.97002 * 120.00000 * 179.97438 * 16 15 13
40 40 H 1.00901 * 110.99869 * 321.04843 * 21 2 1
41 41 H 1.09004 * 109.47031 * 299.99620 * 22 21 2
42 42 H 1.08995 * 109.47111 * 59.99900 * 22 21 2
43 43 H 1.08006 * 122.74908 * 180.22179 * 25 24 23
44 44 H 1.08005 * 126.04031 * 179.71479 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 1.2491
5 6 3.5649 -0.6133 1.3136
6 1 3.9954 -0.9922 0.3868
7 6 4.0852 -1.4383 2.4925
8 7 3.9480 0.7894 1.4924
9 6 5.1612 1.2136 1.0867
10 8 5.9359 0.4340 0.5740
11 6 5.5551 2.6565 1.2701
12 16 7.2293 2.9109 0.6311
13 6 7.4262 4.6298 0.9644
14 1 6.6263 5.1842 1.4326
15 6 8.6089 5.2717 0.6241
16 7 8.7558 6.5560 0.8726
17 14 9.9921 4.3130 -0.1865
18 1 9.8309 4.3634 -1.6619
19 1 11.2971 4.9135 0.1895
20 1 9.9479 2.9001 0.2683
21 7 2.0197 -0.6925 -1.1995
22 6 2.0825 0.2226 -2.3469
23 6 2.5874 -0.5218 -3.5560
24 7 1.8413 -1.1464 -4.4034
25 6 2.4463 -1.7442 -5.4101
26 6 3.7773 -1.6252 -5.4064
27 16 4.2322 -0.6670 -3.9995
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 1.6054 -0.2618 2.1370
32 1 1.7517 -1.7715 1.2055
33 1 3.8001 -2.4819 2.3594
34 1 5.1715 -1.3617 2.5381
35 1 3.6546 -1.0593 3.4193
36 1 3.3285 1.4129 1.9028
37 1 4.8579 3.2952 0.7277
38 1 5.5291 2.9083 2.3303
39 1 9.5824 7.0045 0.6352
40 1 1.4495 -1.4979 -1.4101
41 1 1.0871 0.6163 -2.5526
42 1 2.7589 1.0462 -2.1182
43 1 1.9106 -2.2894 -6.1732
44 1 4.4547 -2.0430 -6.1366
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001133735651.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:41
Heat of formation + Delta-G solvation = -26.348958 kcal
Electronic energy + Delta-G solvation = -25071.323633 eV
Core-core repulsion = 21468.320961 eV
Total energy + Delta-G solvation = -3603.002672 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 343.113 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.80441 -40.57473 -38.67907 -36.32458 -34.65588 -33.51807 -32.34542 -30.47441
-29.89971 -27.82820 -27.68986 -27.33324 -24.39339 -22.83680 -21.82277 -21.32919
-20.82535 -19.86654 -19.06370 -17.88182 -17.31688 -17.04063 -16.75838 -16.56814
-16.32836 -15.94083 -15.64170 -15.44961 -15.09526 -14.94432 -14.70787 -14.61626
-14.29808 -13.91419 -13.70745 -13.57748 -13.33161 -13.27102 -13.15244 -12.98787
-12.90163 -12.68463 -12.56066 -12.33012 -12.03910 -11.85340 -11.71746 -11.62588
-11.15563 -10.82186 -10.67942 -10.49238 -10.39163 -9.96383 -9.91158 -9.38527
-8.95856 -8.50204 -6.19713 -0.26987 0.44862 0.88258 1.02839 1.32032
1.48728 1.59546 1.71549 1.83003 2.25854 2.38405 2.76895 2.88296
3.00475 3.41446 3.72633 3.95637 3.99404 4.09012 4.26618 4.29691
4.32016 4.40570 4.47507 4.51044 4.54387 4.56764 4.59435 4.63259
4.80848 4.87579 4.93241 5.05143 5.15658 5.23159 5.30410 5.33258
5.43810 5.68782 5.72305 5.97050 6.12938 6.38385 6.63650 6.72223
6.95535 7.36844 8.62313
Molecular weight = 343.11amu
Principal moments of inertia in cm(-1)
A = 0.009408 B = 0.003269 C = 0.002677
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2975.398516 B = 8562.812423 C =10458.292268
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.083 3.917
3 H 0.076 0.924
4 C -0.102 4.102
5 C 0.148 3.852
6 H 0.073 0.927
7 C -0.160 4.160
8 N -0.705 5.705
9 C 0.535 3.465
10 O -0.560 6.560
11 C -0.112 4.112
12 S -0.174 6.174
13 C -0.527 4.527
14 H 0.061 0.939
15 C 0.046 3.954
16 N -0.918 5.918
17 Si 0.913 3.087
18 H -0.262 1.262
19 H -0.260 1.260
20 H -0.237 1.237
21 N -0.679 5.679
22 C 0.141 3.859
23 C 0.041 3.959
24 N -0.492 5.492
25 C 0.021 3.979
26 C -0.258 4.258
27 S 0.128 5.872
28 H 0.064 0.936
29 H 0.076 0.924
30 H 0.049 0.951
31 H 0.095 0.905
32 H 0.091 0.909
33 H 0.077 0.923
34 H 0.028 0.972
35 H 0.069 0.931
36 H 0.412 0.588
37 H 0.110 0.890
38 H 0.109 0.891
39 H 0.276 0.724
40 H 0.348 0.652
41 H 0.068 0.932
42 H 0.084 0.916
43 H 0.200 0.800
44 H 0.202 0.798
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.010 -18.737 -4.842 27.838
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C -0.026 4.026
3 H 0.094 0.906
4 C -0.140 4.140
5 C 0.044 3.956
6 H 0.091 0.909
7 C -0.218 4.218
8 N -0.358 5.358
9 C 0.320 3.680
10 O -0.438 6.438
11 C -0.263 4.263
12 S 0.052 5.948
13 C -0.675 4.675
14 H 0.080 0.920
15 C -0.159 4.159
16 N -0.557 5.557
17 Si 0.735 3.265
18 H -0.187 1.187
19 H -0.184 1.184
20 H -0.161 1.161
21 N -0.312 5.312
22 C 0.009 3.991
23 C -0.237 4.237
24 N -0.208 5.208
25 C -0.129 4.129
26 C -0.397 4.397
27 S 0.381 5.619
28 H 0.083 0.917
29 H 0.095 0.905
30 H 0.068 0.932
31 H 0.113 0.887
32 H 0.109 0.891
33 H 0.096 0.904
34 H 0.047 0.953
35 H 0.088 0.912
36 H 0.248 0.752
37 H 0.128 0.872
38 H 0.127 0.873
39 H 0.086 0.914
40 H 0.167 0.833
41 H 0.086 0.914
42 H 0.102 0.898
43 H 0.216 0.784
44 H 0.219 0.781
Dipole moment (debyes) X Y Z Total
from point charges -17.621 -19.432 -5.008 26.705
hybrid contribution -1.532 1.163 -0.532 1.996
sum -19.153 -18.269 -5.540 27.042
Atomic orbital electron populations
1.22421 0.95443 1.02795 1.02747 1.21646 0.93514 0.98028 0.89462
0.90613 1.21839 0.92015 1.02787 0.97363 1.20961 0.95978 0.79878
0.98806 0.90854 1.22153 1.00184 1.00787 0.98704 1.45856 1.15472
1.12057 1.62450 1.19850 0.82374 0.88415 0.77334 1.90688 1.52001
1.56783 1.44295 1.23285 0.99685 0.97245 1.06046 1.84719 1.17526
1.10908 1.81633 1.22480 1.05175 0.93606 1.46219 0.92048 1.25547
1.00120 0.95322 0.94957 1.70020 1.28140 1.10259 1.47246 0.85889
0.79390 0.81203 0.80047 1.18680 1.18435 1.16060 1.60550 1.58402
1.09504 1.02764 1.20363 1.00471 0.93378 0.84868 1.27095 0.93361
1.02343 1.00888 1.66320 1.39323 1.10931 1.04250 1.22196 0.91513
1.01348 0.97879 1.27506 1.00387 1.07978 1.03875 1.84853 1.10492
1.46931 1.19659 0.91680 0.90549 0.93201 0.88703 0.89075 0.90389
0.95266 0.91159 0.75173 0.87218 0.87254 0.91429 0.83267 0.91436
0.89811 0.78372 0.78147
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.69 9.16 71.98 0.66 -1.03 16
2 C 0.08 1.07 2.53 44.91 0.11 1.18 16
3 H 0.08 1.13 7.28 -2.39 -0.02 1.11 16
4 C -0.10 -1.18 4.43 30.59 0.14 -1.04 16
5 C 0.15 2.91 2.52 44.99 0.11 3.02 16
6 H 0.07 1.96 7.05 -2.39 -0.02 1.95 16
7 C -0.16 -3.08 9.48 71.98 0.68 -2.40 16
8 N -0.70 -15.60 4.45 -442.54 -1.97 -17.57 16
9 C 0.54 17.94 7.81 87.66 0.68 18.62 16
10 O -0.56 -23.67 15.52 -3.02 -0.05 -23.72 16
11 C -0.11 -4.14 6.16 71.24 0.44 -3.71 16
12 S -0.17 -8.79 18.55 -56.49 -1.05 -9.84 16
13 C -0.53 -30.67 10.04 67.95 0.68 -29.99 16
14 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16
15 C 0.05 2.69 5.50 84.86 0.47 3.16 16
16 N -0.92 -56.09 13.97 21.65 0.30 -55.78 16
17 Si 0.91 45.18 27.74 68.60 1.90 47.09 16
18 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16
19 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16
20 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16
21 N -0.68 -11.42 5.61 -495.57 -2.78 -14.20 16
22 C 0.14 2.74 6.06 85.56 0.52 3.26 16
23 C 0.04 0.91 6.90 88.52 0.61 1.52 16
24 N -0.49 -11.02 10.54 -191.44 -2.02 -13.04 16
25 C 0.02 0.39 11.35 83.65 0.95 1.34 16
26 C -0.26 -4.60 11.37 66.77 0.76 -3.84 16
27 S 0.13 2.97 23.18 -56.49 -1.31 1.66 16
28 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16
29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16
30 H 0.05 0.56 7.45 -2.39 -0.02 0.54 16
31 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16
32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16
33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16
34 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16
35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
36 H 0.41 6.42 8.60 -92.71 -0.80 5.62 16
37 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16
38 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16
39 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16
40 H 0.35 5.47 8.46 -89.69 -0.76 4.71 16
41 H 0.07 1.19 7.44 -2.39 -0.02 1.17 16
42 H 0.08 1.81 8.05 -2.39 -0.02 1.79 16
43 H 0.20 2.39 8.06 -2.91 -0.02 2.36 16
44 H 0.20 2.36 8.06 -2.91 -0.02 2.33 16
Total: -1.00 -75.58 393.89 -0.73 -76.30
By element:
Atomic # 1 Polarization: 19.57 SS G_CDS: -0.58 Total: 18.99 kcal
Atomic # 6 Polarization: -16.71 SS G_CDS: 6.81 Total: -9.89 kcal
Atomic # 7 Polarization: -94.13 SS G_CDS: -6.46 Total: -100.59 kcal
Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.72 kcal
Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.09 kcal
Atomic # 16 Polarization: -5.82 SS G_CDS: -2.36 Total: -8.18 kcal
Total: -75.58 -0.73 -76.30 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001133735651.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.955 kcal
(2) G-P(sol) polarization free energy of solvation -75.576 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.620 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.728 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.304 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.349 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds