Wall clock time and date at job start Sat Apr 11 2020 06:48:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09008 * 109.46930 * 2 1
4 4 C 1.52993 * 109.47660 * 239.99619 * 2 1 3
5 5 N 1.46905 * 109.47039 * 65.00109 * 4 2 1
6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 2
7 7 C 1.50697 * 109.46943 * 180.02562 * 6 5 4
8 8 O 1.21292 * 120.00024 * 359.97438 * 7 6 5
9 9 N 1.34776 * 119.99767 * 180.02562 * 7 6 5
10 10 C 1.37097 * 119.99759 * 179.97438 * 9 7 6
11 11 H 1.08000 * 120.00171 * 359.97438 * 10 9 7
12 12 C 1.38951 * 120.00074 * 179.97438 * 10 9 7
13 13 N 1.31416 * 119.99768 * 0.02562 * 12 10 9
14 14 Si 1.86800 * 120.00310 * 179.97438 * 12 10 9
15 15 H 1.48498 * 109.47100 * 90.00351 * 14 12 10
16 16 H 1.48501 * 109.47251 * 210.00371 * 14 12 10
17 17 H 1.48503 * 109.46881 * 330.00485 * 14 12 10
18 18 C 1.53002 * 109.47018 * 119.99296 * 2 1 3
19 19 N 1.46497 * 109.47145 * 295.00697 * 18 2 1
20 20 C 1.34779 * 119.99900 * 179.97438 * 19 18 2
21 21 O 1.21735 * 120.00184 * 359.97438 * 20 19 18
22 22 C 1.46349 * 120.00046 * 180.02562 * 20 19 18
23 23 C 1.36731 * 125.43417 * 179.72076 * 22 20 19
24 24 C 1.37346 * 113.32913 * 179.79524 * 23 22 20
25 25 C 1.34210 * 115.04490 * 0.49109 * 24 23 22
26 26 F 1.35096 * 124.54279 * 179.74278 * 25 24 23
27 27 S 1.70618 * 110.91713 * 359.73021 * 25 24 23
28 28 H 1.08996 * 109.47633 * 300.00550 * 1 2 3
29 29 H 1.09008 * 109.46827 * 60.00928 * 1 2 3
30 30 H 1.08998 * 109.46936 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.47393 * 305.00390 * 4 2 1
32 32 H 1.08998 * 109.47408 * 185.00036 * 4 2 1
33 33 H 1.00901 * 110.99869 * 56.04956 * 5 4 2
34 34 H 1.09004 * 109.47031 * 299.99620 * 6 5 4
35 35 H 1.08995 * 109.47111 * 59.99900 * 6 5 4
36 36 H 0.96997 * 120.00713 * 359.97438 * 9 7 6
37 37 H 0.96999 * 119.99907 * 179.97438 * 13 12 10
38 38 H 1.09002 * 109.46730 * 55.00366 * 18 2 1
39 39 H 1.08994 * 109.47589 * 175.00151 * 18 2 1
40 40 H 0.97000 * 120.00674 * 359.97438 * 19 18 2
41 41 H 1.07998 * 123.33993 * 359.97438 * 23 22 20
42 42 H 1.07995 * 122.47881 * 180.23748 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2491
5 7 1.6515 0.0374 -2.4456
6 6 2.1250 -0.6273 -3.6671
7 6 1.7091 0.1784 -4.8708
8 8 1.0798 1.2051 -4.7254
9 7 2.0356 -0.2423 -6.1088
10 6 1.6568 0.4904 -7.2039
11 1 1.0965 1.4046 -7.0745
12 6 1.9939 0.0570 -8.4803
13 7 2.6753 -1.0556 -8.6378
14 14 1.4772 1.0550 -9.9725
15 1 2.5365 2.0434 -10.2979
16 1 1.2753 0.1466 -11.1298
17 1 0.2089 1.7682 -9.6759
18 6 2.0399 -0.7211 1.2494
19 7 1.6522 0.0355 2.4424
20 6 1.9953 -0.4133 3.6660
21 8 2.6270 -1.4477 3.7800
22 6 1.6075 0.3422 4.8579
23 6 1.8907 -0.0118 6.1479
24 6 1.4112 0.8812 7.0747
25 6 0.7466 1.9290 6.5633
26 9 0.1917 2.9171 7.2987
27 16 0.6968 1.8462 4.8599
28 1 -0.3634 0.5139 0.8899
29 1 -0.3633 0.5137 -0.8901
30 1 -0.3633 -1.0277 0.0005
31 1 1.6055 -1.7198 -1.2951
32 1 3.1264 -0.7995 -1.2054
33 1 1.9883 0.9872 -2.3967
34 1 3.2119 -0.7051 -3.6404
35 1 1.6907 -1.6250 -3.7295
36 1 2.5386 -1.0635 -6.2252
37 1 2.9103 -1.3584 -9.5289
38 1 1.6053 -1.7197 1.2953
39 1 3.1262 -0.7994 1.2058
40 1 1.1486 0.8596 2.3517
41 1 2.4397 -0.9036 6.4117
42 1 1.5547 0.7478 8.1368
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001732374422.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:59
Heat of formation + Delta-G solvation = -87.100584 kcal
Electronic energy + Delta-G solvation = -25537.277281 eV
Core-core repulsion = 21365.427045 eV
Total energy + Delta-G solvation = -4171.850236 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.115 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-49.67655 -40.25757 -38.45696 -38.07145 -37.13660 -34.99456 -33.88813 -32.51817
-31.20899 -30.08845 -27.44616 -27.00458 -25.45434 -24.66434 -23.21764 -21.86595
-20.92468 -20.23465 -19.50137 -19.09030 -17.88843 -17.31715 -17.02511 -16.59202
-16.24514 -16.01007 -15.69138 -15.46484 -15.07929 -14.90284 -14.75072 -14.39606
-14.29007 -13.74158 -13.69801 -13.42918 -13.36382 -12.89675 -12.66373 -12.62592
-12.41165 -11.96825 -11.70616 -11.65894 -11.53010 -11.19237 -11.12734 -11.01231
-10.93635 -10.52179 -10.40146 -10.22623 -9.58852 -9.51850 -9.38420 -9.25918
-8.47987 -8.07774 -7.96851 -6.42579 -3.83503 -0.27365 0.36100 0.98210
1.63297 2.65127 2.70987 3.17154 3.25962 3.31859 3.68750 3.89867
4.06030 4.25592 4.27258 4.63543 4.64994 4.69123 4.74952 4.88890
5.14579 5.18421 5.24665 5.27740 5.35678 5.40923 5.53837 5.56759
5.63753 5.71356 5.82632 5.84677 5.91586 5.97034 6.13209 6.25526
6.35342 6.97600 7.17090 7.54317 7.62296 7.68823 8.05365 8.60237
9.16934 9.53452 10.04707 10.75105
Molecular weight = 343.12amu
Principal moments of inertia in cm(-1)
A = 0.030809 B = 0.001465 C = 0.001411
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 908.594838 B =19106.607392 C =19842.567264
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.101 4.101
3 H 0.078 0.922
4 C 0.066 3.934
5 N -0.666 5.666
6 C 0.051 3.949
7 C 0.441 3.559
8 O -0.584 6.584
9 N -0.564 5.564
10 C -0.300 4.300
11 H 0.103 0.897
12 C 0.022 3.978
13 N -0.901 5.901
14 Si 0.930 3.070
15 H -0.278 1.278
16 H -0.284 1.284
17 H -0.269 1.269
18 C 0.124 3.876
19 N -0.721 5.721
20 C 0.592 3.408
21 O -0.524 6.524
22 C -0.262 4.262
23 C -0.034 4.034
24 C -0.182 4.182
25 C -0.020 4.020
26 F -0.097 7.097
27 S 0.227 5.773
28 H 0.043 0.957
29 H 0.079 0.921
30 H 0.055 0.945
31 H 0.075 0.925
32 H 0.030 0.970
33 H 0.349 0.651
34 H 0.043 0.957
35 H 0.086 0.914
36 H 0.392 0.608
37 H 0.271 0.729
38 H 0.075 0.925
39 H 0.072 0.928
40 H 0.399 0.601
41 H 0.165 0.835
42 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.207 1.661 30.039 30.109
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.120 4.120
3 H 0.096 0.904
4 C -0.064 4.064
5 N -0.298 5.298
6 C -0.082 4.082
7 C 0.226 3.774
8 O -0.468 6.468
9 N -0.200 5.200
10 C -0.430 4.430
11 H 0.121 0.879
12 C -0.179 4.179
13 N -0.543 5.543
14 Si 0.757 3.243
15 H -0.204 1.204
16 H -0.209 1.209
17 H -0.194 1.194
18 C 0.001 3.999
19 N -0.373 5.373
20 C 0.377 3.623
21 O -0.402 6.402
22 C -0.383 4.383
23 C -0.066 4.066
24 C -0.215 4.215
25 C -0.158 4.158
26 F -0.076 7.076
27 S 0.492 5.508
28 H 0.062 0.938
29 H 0.098 0.902
30 H 0.074 0.926
31 H 0.094 0.906
32 H 0.048 0.952
33 H 0.168 0.832
34 H 0.061 0.939
35 H 0.104 0.896
36 H 0.226 0.774
37 H 0.081 0.919
38 H 0.093 0.907
39 H 0.091 0.909
40 H 0.233 0.767
41 H 0.183 0.817
42 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -2.395 2.200 28.871 29.054
hybrid contribution 1.293 -0.129 0.547 1.410
sum -1.101 2.070 29.418 29.511
Atomic orbital electron populations
1.21777 0.93635 1.02331 1.02149 1.21363 0.97727 1.00042 0.92910
0.90401 1.21887 0.97402 0.97988 0.89127 1.60033 1.64181 1.05841
0.99778 1.21666 0.97772 0.98661 0.90083 1.19807 0.85568 0.87936
0.84088 1.90518 1.44132 1.26437 1.85745 1.41865 1.49496 1.24207
1.04447 1.19706 1.32916 1.06726 0.83627 0.87917 1.25265 0.96915
0.96632 0.99117 1.69614 1.38908 1.21670 1.24082 0.85853 0.79147
0.79031 0.80224 1.20438 1.20919 1.19410 1.21490 1.00398 0.95485
0.82535 1.45888 1.57776 1.27830 1.05765 1.16745 0.79455 0.84326
0.81770 1.90875 1.39842 1.23347 1.86128 1.24550 1.13033 1.02182
0.98504 1.20513 0.97099 0.99662 0.89348 1.20332 1.03126 0.94771
1.03257 1.21974 1.05310 0.92628 0.95852 1.91557 1.82858 1.58091
1.75129 1.83499 1.50408 1.19051 0.97844 0.93816 0.90226 0.92612
0.90629 0.95176 0.83222 0.93858 0.89558 0.77448 0.91867 0.90658
0.90942 0.76656 0.81708 0.82268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.33 8.95 37.16 0.33 -1.00 16
2 C -0.10 -0.90 2.57 -90.62 -0.23 -1.14 16
3 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16
4 C 0.07 0.72 5.07 -3.82 -0.02 0.71 16
5 N -0.67 -9.93 5.58 -115.06 -0.64 -10.57 16
6 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16
7 C 0.44 10.21 7.82 -10.99 -0.09 10.12 16
8 O -0.58 -15.56 15.78 5.55 0.09 -15.47 16
9 N -0.56 -14.15 5.29 -10.96 -0.06 -14.20 16
10 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16
11 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16
12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16
13 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16
14 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16
15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
17 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16
18 C 0.12 1.07 5.06 -4.04 -0.02 1.05 16
19 N -0.72 -5.83 5.28 -61.72 -0.33 -6.16 16
20 C 0.59 5.80 7.77 -13.00 -0.10 5.70 16
21 O -0.52 -6.91 16.84 5.16 0.09 -6.82 16
22 C -0.26 -2.02 6.44 -36.87 -0.24 -2.26 16
23 C -0.03 -0.23 10.00 -40.45 -0.40 -0.64 16
24 C -0.18 -1.08 10.16 -41.33 -0.42 -1.50 16
25 C -0.02 -0.13 8.10 29.31 0.24 0.10 16
26 F -0.10 -0.74 17.32 2.25 0.04 -0.70 16
27 S 0.23 1.34 22.14 -107.50 -2.38 -1.04 16
28 H 0.04 0.33 7.18 -51.93 -0.37 -0.04 16
29 H 0.08 0.94 7.75 -51.92 -0.40 0.54 16
30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16
33 H 0.35 5.37 8.43 -39.29 -0.33 5.03 16
34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16
35 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16
36 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16
37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16
38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
40 H 0.40 2.49 6.76 -40.82 -0.28 2.22 16
41 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16
42 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16
LS Contribution 380.20 15.07 5.73 5.73
Total: -1.00 -32.70 380.20 -8.43 -41.13
By element:
Atomic # 1 Polarization: 17.31 SS G_CDS: -5.44 Total: 11.87 kcal
Atomic # 6 Polarization: 5.24 SS G_CDS: -1.22 Total: 4.02 kcal
Atomic # 7 Polarization: -54.30 SS G_CDS: -0.30 Total: -54.60 kcal
Atomic # 8 Polarization: -22.47 SS G_CDS: 0.17 Total: -22.30 kcal
Atomic # 9 Polarization: -0.74 SS G_CDS: 0.04 Total: -0.70 kcal
Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal
Atomic # 16 Polarization: 1.34 SS G_CDS: -2.38 Total: -1.04 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -32.70 -8.43 -41.13 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732374422.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.972 kcal
(2) G-P(sol) polarization free energy of solvation -32.700 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.101 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds