Wall clock time and date at job start Sat Apr 11 2020 06:48:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09008 * 109.46930 * 2 1
4 4 C 1.52993 * 109.47660 * 239.99619 * 2 1 3
5 5 N 1.46905 * 109.47039 * 65.00109 * 4 2 1
6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 2
7 7 C 1.50697 * 109.46943 * 180.02562 * 6 5 4
8 8 O 1.21292 * 120.00024 * 359.97438 * 7 6 5
9 9 N 1.34776 * 119.99767 * 180.02562 * 7 6 5
10 10 C 1.37097 * 119.99759 * 179.97438 * 9 7 6
11 11 H 1.08000 * 120.00171 * 359.97438 * 10 9 7
12 12 C 1.38951 * 120.00074 * 179.97438 * 10 9 7
13 13 N 1.31416 * 119.99768 * 0.02562 * 12 10 9
14 14 Si 1.86800 * 120.00310 * 179.97438 * 12 10 9
15 15 H 1.48498 * 109.47100 * 90.00351 * 14 12 10
16 16 H 1.48501 * 109.47251 * 210.00371 * 14 12 10
17 17 H 1.48503 * 109.46881 * 330.00485 * 14 12 10
18 18 C 1.53002 * 109.47018 * 119.99296 * 2 1 3
19 19 N 1.46497 * 109.47145 * 295.00697 * 18 2 1
20 20 C 1.34779 * 119.99900 * 179.97438 * 19 18 2
21 21 O 1.21735 * 120.00184 * 359.97438 * 20 19 18
22 22 C 1.46349 * 120.00046 * 180.02562 * 20 19 18
23 23 C 1.36731 * 125.43417 * 179.72076 * 22 20 19
24 24 C 1.37346 * 113.32913 * 179.79524 * 23 22 20
25 25 C 1.34210 * 115.04490 * 0.49109 * 24 23 22
26 26 F 1.35096 * 124.54279 * 179.74278 * 25 24 23
27 27 S 1.70618 * 110.91713 * 359.73021 * 25 24 23
28 28 H 1.08996 * 109.47633 * 300.00550 * 1 2 3
29 29 H 1.09008 * 109.46827 * 60.00928 * 1 2 3
30 30 H 1.08998 * 109.46936 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.47393 * 305.00390 * 4 2 1
32 32 H 1.08998 * 109.47408 * 185.00036 * 4 2 1
33 33 H 1.00901 * 110.99869 * 56.04956 * 5 4 2
34 34 H 1.09004 * 109.47031 * 299.99620 * 6 5 4
35 35 H 1.08995 * 109.47111 * 59.99900 * 6 5 4
36 36 H 0.96997 * 120.00713 * 359.97438 * 9 7 6
37 37 H 0.96999 * 119.99907 * 179.97438 * 13 12 10
38 38 H 1.09002 * 109.46730 * 55.00366 * 18 2 1
39 39 H 1.08994 * 109.47589 * 175.00151 * 18 2 1
40 40 H 0.97000 * 120.00674 * 359.97438 * 19 18 2
41 41 H 1.07998 * 123.33993 * 359.97438 * 23 22 20
42 42 H 1.07995 * 122.47881 * 180.23748 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2491
5 7 1.6515 0.0374 -2.4456
6 6 2.1250 -0.6273 -3.6671
7 6 1.7091 0.1784 -4.8708
8 8 1.0798 1.2051 -4.7254
9 7 2.0356 -0.2423 -6.1088
10 6 1.6568 0.4904 -7.2039
11 1 1.0965 1.4046 -7.0745
12 6 1.9939 0.0570 -8.4803
13 7 2.6753 -1.0556 -8.6378
14 14 1.4772 1.0550 -9.9725
15 1 2.5365 2.0434 -10.2979
16 1 1.2753 0.1466 -11.1298
17 1 0.2089 1.7682 -9.6759
18 6 2.0399 -0.7211 1.2494
19 7 1.6522 0.0355 2.4424
20 6 1.9953 -0.4133 3.6660
21 8 2.6270 -1.4477 3.7800
22 6 1.6075 0.3422 4.8579
23 6 1.8907 -0.0118 6.1479
24 6 1.4112 0.8812 7.0747
25 6 0.7466 1.9290 6.5633
26 9 0.1917 2.9171 7.2987
27 16 0.6968 1.8462 4.8599
28 1 -0.3634 0.5139 0.8899
29 1 -0.3633 0.5137 -0.8901
30 1 -0.3633 -1.0277 0.0005
31 1 1.6055 -1.7198 -1.2951
32 1 3.1264 -0.7995 -1.2054
33 1 1.9883 0.9872 -2.3967
34 1 3.2119 -0.7051 -3.6404
35 1 1.6907 -1.6250 -3.7295
36 1 2.5386 -1.0635 -6.2252
37 1 2.9103 -1.3584 -9.5289
38 1 1.6053 -1.7197 1.2953
39 1 3.1262 -0.7994 1.2058
40 1 1.1486 0.8596 2.3517
41 1 2.4397 -0.9036 6.4117
42 1 1.5547 0.7478 8.1368
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001732374422.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:59
Heat of formation + Delta-G solvation = -111.005560 kcal
Electronic energy + Delta-G solvation = -25538.313879 eV
Core-core repulsion = 21365.427045 eV
Total energy + Delta-G solvation = -4172.886834 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 343.115 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-50.21685 -40.99150 -40.14909 -38.75631 -38.06215 -36.19885 -35.67141 -33.54884
-33.16807 -30.69368 -28.80821 -27.72757 -26.66433 -25.75562 -24.37634 -22.55478
-21.71486 -21.11081 -20.73840 -20.03962 -19.81731 -17.92437 -17.87405 -17.54926
-17.14104 -16.96938 -16.72203 -16.47541 -16.38475 -15.99068 -15.62373 -15.54856
-15.44762 -15.17484 -14.81786 -14.45728 -14.18571 -13.93542 -13.64106 -13.44670
-13.36608 -13.16956 -13.13917 -12.98911 -12.83052 -12.40839 -12.16575 -12.11915
-12.01781 -11.95230 -11.71844 -11.49297 -11.32345 -10.32822 -10.31305 -10.00304
-9.83941 -9.81847 -9.27522 -8.45721 -5.94463 -0.82426 -0.13468 0.46713
1.10123 1.38919 1.42784 1.55479 1.96423 2.02664 2.07024 2.30356
2.96028 3.18757 3.21834 3.54010 3.64642 3.87148 3.98169 4.06886
4.12386 4.24186 4.34731 4.49741 4.50880 4.60288 4.64118 4.72276
4.74984 4.84783 4.90750 4.97652 5.07938 5.10062 5.18244 5.36825
5.41931 5.54091 5.90136 6.11754 6.30972 6.44771 6.61266 6.98784
7.13721 7.57858 8.12932 8.71612
Molecular weight = 343.12amu
Principal moments of inertia in cm(-1)
A = 0.030809 B = 0.001465 C = 0.001411
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 908.594838 B =19106.607392 C =19842.567264
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.090 4.090
3 H 0.084 0.916
4 C 0.067 3.933
5 N -0.677 5.677
6 C 0.065 3.935
7 C 0.438 3.562
8 O -0.622 6.622
9 N -0.574 5.574
10 C -0.335 4.335
11 H 0.079 0.921
12 C -0.013 4.013
13 N -0.920 5.920
14 Si 0.993 3.007
15 H -0.271 1.271
16 H -0.271 1.271
17 H -0.273 1.273
18 C 0.131 3.869
19 N -0.713 5.713
20 C 0.592 3.408
21 O -0.564 6.564
22 C -0.284 4.284
23 C -0.032 4.032
24 C -0.178 4.178
25 C -0.033 4.033
26 F -0.103 7.103
27 S 0.265 5.735
28 H 0.062 0.938
29 H 0.054 0.946
30 H 0.053 0.947
31 H 0.080 0.920
32 H 0.043 0.957
33 H 0.345 0.655
34 H 0.066 0.934
35 H 0.103 0.897
36 H 0.396 0.604
37 H 0.277 0.723
38 H 0.072 0.928
39 H 0.071 0.929
40 H 0.408 0.592
41 H 0.170 0.830
42 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.110 1.768 30.915 30.986
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.109 4.109
3 H 0.103 0.897
4 C -0.063 4.063
5 N -0.310 5.310
6 C -0.067 4.067
7 C 0.225 3.775
8 O -0.509 6.509
9 N -0.211 5.211
10 C -0.464 4.464
11 H 0.097 0.903
12 C -0.213 4.213
13 N -0.561 5.561
14 Si 0.817 3.183
15 H -0.196 1.196
16 H -0.196 1.196
17 H -0.198 1.198
18 C 0.007 3.993
19 N -0.364 5.364
20 C 0.379 3.621
21 O -0.445 6.445
22 C -0.405 4.405
23 C -0.065 4.065
24 C -0.211 4.211
25 C -0.171 4.171
26 F -0.082 7.082
27 S 0.530 5.470
28 H 0.080 0.920
29 H 0.073 0.927
30 H 0.072 0.928
31 H 0.098 0.902
32 H 0.061 0.939
33 H 0.163 0.837
34 H 0.084 0.916
35 H 0.121 0.879
36 H 0.230 0.770
37 H 0.087 0.913
38 H 0.090 0.910
39 H 0.089 0.911
40 H 0.245 0.755
41 H 0.187 0.813
42 H 0.197 0.803
Dipole moment (debyes) X Y Z Total
from point charges -2.302 2.311 29.751 29.929
hybrid contribution 1.239 -0.140 0.358 1.297
sum -1.064 2.172 30.109 30.206
Atomic orbital electron populations
1.21732 0.93898 1.02128 1.01848 1.21231 0.97310 1.00195 0.92139
0.89731 1.21964 0.98331 0.97846 0.88120 1.60026 1.64718 1.05956
1.00279 1.21522 0.99109 0.98034 0.88081 1.20904 0.83841 0.87628
0.85086 1.90486 1.45535 1.28360 1.86514 1.41943 1.50090 1.24332
1.04782 1.19678 1.34423 1.06992 0.85338 0.90272 1.26036 0.96463
0.97559 1.01208 1.69674 1.39021 1.22411 1.25027 0.84926 0.78607
0.77832 0.76955 1.19623 1.19620 1.19795 1.21369 1.00252 0.95285
0.82402 1.45811 1.57336 1.27983 1.05279 1.16980 0.78772 0.83903
0.82494 1.90850 1.41803 1.25143 1.86743 1.24455 1.14513 1.03424
0.98082 1.20670 0.96700 0.99888 0.89231 1.20500 1.02307 0.94041
1.04205 1.22195 1.05667 0.92824 0.96422 1.91545 1.82995 1.58324
1.75346 1.83315 1.49245 1.17355 0.97072 0.91951 0.92662 0.92781
0.90167 0.93871 0.83679 0.91611 0.87896 0.76992 0.91333 0.91015
0.91077 0.75505 0.81269 0.80305
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.43 8.95 71.98 0.64 -1.78 16
2 C -0.09 -1.45 2.57 -10.80 -0.03 -1.48 16
3 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16
4 C 0.07 1.34 5.07 86.30 0.44 1.78 16
5 N -0.68 -19.44 5.58 -517.93 -2.89 -22.33 16
6 C 0.06 2.12 6.17 85.56 0.53 2.65 16
7 C 0.44 20.41 7.82 87.66 0.69 21.10 16
8 O -0.62 -33.82 15.78 -3.07 -0.05 -33.87 16
9 N -0.57 -29.18 5.29 -306.99 -1.62 -30.81 16
10 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16
11 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16
12 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16
13 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16
14 Si 0.99 42.68 29.55 68.60 2.03 44.71 16
15 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16
16 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16
17 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16
18 C 0.13 2.06 5.06 86.38 0.44 2.50 16
19 N -0.71 -10.52 5.28 -467.39 -2.47 -12.99 16
20 C 0.59 11.09 7.77 86.35 0.67 11.76 16
21 O -0.56 -14.73 16.84 -4.46 -0.08 -14.81 16
22 C -0.28 -4.06 6.44 24.03 0.15 -3.91 16
23 C -0.03 -0.40 10.00 21.71 0.22 -0.18 16
24 C -0.18 -1.81 10.16 21.14 0.21 -1.60 16
25 C -0.03 -0.39 8.10 66.90 0.54 0.15 16
26 F -0.10 -1.41 17.32 44.97 0.78 -0.63 16
27 S 0.26 2.69 22.14 -56.49 -1.25 1.44 16
28 H 0.06 0.84 7.18 -2.39 -0.02 0.82 16
29 H 0.05 1.27 7.75 -2.38 -0.02 1.25 16
30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16
33 H 0.34 10.35 8.43 -89.69 -0.76 9.60 16
34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
35 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16
36 H 0.40 19.13 7.90 -92.71 -0.73 18.39 16
37 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16
38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16
39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
40 H 0.41 4.35 6.76 -92.71 -0.63 3.73 16
41 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16
42 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16
Total: -1.00 -70.93 380.20 -0.50 -71.44
By element:
Atomic # 1 Polarization: 35.37 SS G_CDS: -1.02 Total: 34.34 kcal
Atomic # 6 Polarization: 6.88 SS G_CDS: 5.79 Total: 12.66 kcal
Atomic # 7 Polarization: -108.59 SS G_CDS: -6.70 Total: -115.29 kcal
Atomic # 8 Polarization: -48.55 SS G_CDS: -0.12 Total: -48.67 kcal
Atomic # 9 Polarization: -1.41 SS G_CDS: 0.78 Total: -0.63 kcal
Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal
Atomic # 16 Polarization: 2.69 SS G_CDS: -1.25 Total: 1.44 kcal
Total: -70.93 -0.50 -71.44 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732374422.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.569 kcal
(2) G-P(sol) polarization free energy of solvation -70.934 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.503 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.503 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.006 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds