Wall clock time and date at job start Sat Apr 11 2020 06:50:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86802 * 119.99854 * 2 1
4 4 H 1.48501 * 109.46907 * 274.98306 * 3 2 1
5 5 H 1.48496 * 109.47377 * 34.98451 * 3 2 1
6 6 H 1.48501 * 109.47212 * 154.98776 * 3 2 1
7 7 C 1.38817 * 120.00093 * 179.97438 * 2 1 3
8 8 H 1.07994 * 119.99525 * 187.06708 * 7 2 1
9 9 N 1.36938 * 119.99760 * 7.06129 * 7 2 1
10 10 C 1.47022 * 125.64896 * 354.88028 * 9 7 2
11 11 C 1.54328 * 107.26739 * 178.90272 * 10 9 7
12 12 H 1.09003 * 110.71839 * 96.16964 * 11 10 9
13 13 O 1.42907 * 110.71808 * 219.26562 * 11 10 9
14 14 C 1.55151 * 102.94504 * 337.80685 * 11 10 9
15 15 H 1.08996 * 111.00652 * 277.43106 * 14 11 10
16 16 N 1.46494 * 111.00557 * 153.57630 * 14 11 10
17 17 C 1.34781 * 120.00041 * 155.00157 * 16 14 11
18 18 O 1.21580 * 119.99973 * 359.97438 * 17 16 14
19 19 C 1.47564 * 119.99775 * 179.97438 * 17 16 14
20 20 C 1.38907 * 120.29743 * 359.72435 * 19 17 16
21 21 C 1.40560 * 118.06603 * 179.74080 * 20 19 17
22 22 C 1.40540 * 121.13374 * 180.20824 * 21 20 19
23 23 C 1.36150 * 119.64045 * 180.34548 * 22 21 20
24 24 C 1.39319 * 120.83241 * 359.97438 * 23 22 21
25 25 C 1.36150 * 121.07605 * 0.02562 * 24 23 22
26 26 C 1.40523 * 119.82660 * 0.02562 * 25 24 23
27 27 N 1.33813 * 120.74225 * 179.97438 * 26 25 24
28 28 C 1.31381 * 121.66538 * 180.02562 * 27 26 25
29 29 O 1.35411 * 119.31868 * 180.02562 * 28 27 26
30 30 C 1.47425 * 125.64396 * 174.83686 * 9 7 2
31 31 H 0.96998 * 120.00290 * 0.02562 * 1 2 3
32 32 H 1.08999 * 109.88197 * 59.48881 * 10 9 7
33 33 H 1.08997 * 110.01106 * 298.38732 * 10 9 7
34 34 H 0.96701 * 113.99683 * 296.15449 * 13 11 10
35 35 H 0.97006 * 120.00035 * 334.99820 * 16 14 11
36 36 H 1.08002 * 120.96740 * 359.97438 * 20 19 17
37 37 H 1.07998 * 120.17850 * 0.32116 * 22 21 20
38 38 H 1.07995 * 119.58030 * 180.02562 * 23 22 21
39 39 H 1.08007 * 119.46471 * 180.02562 * 24 23 22
40 40 H 1.08008 * 120.08495 * 179.97438 * 25 24 23
41 41 H 0.96699 * 114.00133 * 270.01727 * 29 28 27
42 42 H 1.08996 * 110.36845 * 323.00255 * 30 9 7
43 43 H 1.09000 * 110.36879 * 85.33004 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.3923 2.1072 -1.3948
5 1 1.5043 2.6200 0.8027
6 1 3.5965 1.4121 0.5920
7 6 2.0103 -1.2022 0.0005
8 1 3.0841 -1.2056 0.1156
9 7 1.3334 -2.3836 -0.1447
10 6 -0.1281 -2.5322 -0.2032
11 6 -0.4285 -4.0332 -0.3998
12 1 -0.6384 -4.5129 0.5562
13 8 -1.5187 -4.2162 -1.3054
14 6 0.8921 -4.5752 -1.0077
15 1 0.9282 -4.3997 -2.0828
16 7 1.0650 -5.9978 -0.7038
17 6 1.8218 -6.7714 -1.5072
18 8 2.3605 -6.2886 -2.4844
19 6 1.9964 -8.2043 -1.2008
20 6 1.3883 -8.7609 -0.0828
21 6 1.5815 -10.1316 0.1615
22 6 0.9929 -10.7620 1.2711
23 6 1.2060 -12.0900 1.4825
24 6 2.0004 -12.8332 0.6121
25 6 2.5858 -12.2546 -0.4725
26 6 2.3911 -10.8860 -0.7249
27 7 2.9581 -10.2985 -1.7851
28 6 2.7886 -9.0205 -2.0380
29 8 3.3844 -8.4750 -3.1248
30 6 1.9496 -3.7171 -0.2693
31 1 -0.4850 0.8400 -0.0004
32 1 -0.5254 -1.9616 -1.0427
33 1 -0.5760 -2.1833 0.7272
34 1 -2.3588 -3.8583 -0.9871
35 1 0.6349 -6.3831 0.0757
36 1 0.7816 -8.1589 0.5775
37 1 0.3752 -10.1960 1.9526
38 1 0.7529 -12.5735 2.3353
39 1 2.1543 -13.8854 0.8007
40 1 3.1989 -12.8458 -1.1366
41 1 4.2700 -8.1261 -2.9542
42 1 2.8666 -3.6581 -0.8554
43 1 2.1548 -4.1338 0.7168
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001077481664.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:59
Heat of formation + Delta-G solvation = -27.820851 kcal
Electronic energy + Delta-G solvation = -29156.831782 eV
Core-core repulsion = 24975.568462 eV
Total energy + Delta-G solvation = -4181.263320 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.39285 -39.68540 -38.49933 -37.62284 -36.08725 -35.11043 -34.35334 -33.69903
-31.80798 -30.69268 -30.08137 -28.38944 -27.10201 -25.18045 -24.43607 -23.83315
-22.53354 -21.32768 -20.56934 -20.29963 -19.30196 -18.49546 -17.96964 -16.99669
-16.91665 -16.59232 -15.99499 -15.74231 -15.39004 -14.99876 -14.77465 -14.51838
-14.43384 -14.08519 -14.03049 -13.75058 -13.68758 -13.18465 -12.73916 -12.53312
-12.30234 -12.11094 -12.05220 -11.76511 -11.64875 -11.57170 -11.30310 -10.95685
-10.90559 -10.83721 -10.26941 -10.16008 -9.96424 -9.90354 -9.65020 -9.35444
-9.08841 -8.87581 -8.66371 -8.63918 -6.95744 -5.81598 -3.14937 -0.17330
0.23835 1.46936 2.21188 3.04162 3.12480 3.32680 3.37651 3.43300
3.44437 3.72241 4.10365 4.14409 4.28451 4.38494 4.41413 4.57366
4.69048 4.74893 4.86641 4.97651 5.13888 5.26528 5.28081 5.38174
5.48152 5.53256 5.58840 5.61539 5.76109 5.88065 5.96158 6.00539
6.02983 6.05915 6.35844 6.42310 6.55253 6.80477 7.25331 7.31257
7.43639 7.53093 7.59639 7.69767 8.07251 8.12800 8.26638 9.10634
9.71039 10.33966 11.30643
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.019528 B = 0.002394 C = 0.002301
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1433.502870 B =11691.197280 C =12163.226175
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C -0.006 4.006
3 Si 0.914 3.086
4 H -0.287 1.287
5 H -0.291 1.291
6 H -0.280 1.280
7 C -0.231 4.231
8 H 0.081 0.919
9 N -0.599 5.599
10 C 0.152 3.848
11 C 0.068 3.932
12 H 0.056 0.944
13 O -0.563 6.563
14 C 0.139 3.861
15 H 0.109 0.891
16 N -0.710 5.710
17 C 0.560 3.440
18 O -0.511 6.511
19 C -0.193 4.193
20 C -0.004 4.004
21 C -0.123 4.123
22 C -0.081 4.081
23 C -0.125 4.125
24 C -0.087 4.087
25 C -0.103 4.103
26 C 0.168 3.832
27 N -0.502 5.502
28 C 0.396 3.604
29 O -0.459 6.459
30 C 0.131 3.869
31 H 0.254 0.746
32 H 0.063 0.937
33 H 0.048 0.952
34 H 0.377 0.623
35 H 0.394 0.606
36 H 0.149 0.851
37 H 0.135 0.865
38 H 0.130 0.870
39 H 0.132 0.868
40 H 0.138 0.862
41 H 0.408 0.592
42 H 0.052 0.948
43 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.258 -24.836 5.083 25.353
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.202 4.202
3 Si 0.744 3.256
4 H -0.214 1.214
5 H -0.217 1.217
6 H -0.205 1.205
7 C -0.359 4.359
8 H 0.099 0.901
9 N -0.327 5.327
10 C 0.027 3.973
11 C 0.008 3.992
12 H 0.074 0.926
13 O -0.368 6.368
14 C 0.034 3.966
15 H 0.127 0.873
16 N -0.361 5.361
17 C 0.345 3.655
18 O -0.387 6.387
19 C -0.200 4.200
20 C -0.030 4.030
21 C -0.125 4.125
22 C -0.100 4.100
23 C -0.143 4.143
24 C -0.107 4.107
25 C -0.121 4.121
26 C 0.046 3.954
27 N -0.222 5.222
28 C 0.202 3.798
29 O -0.266 6.266
30 C 0.003 3.997
31 H 0.064 0.936
32 H 0.081 0.919
33 H 0.066 0.934
34 H 0.224 0.776
35 H 0.228 0.772
36 H 0.167 0.833
37 H 0.153 0.847
38 H 0.148 0.852
39 H 0.150 0.850
40 H 0.156 0.844
41 H 0.269 0.731
42 H 0.070 0.930
43 H 0.041 0.959
Dipole moment (debyes) X Y Z Total
from point charges 1.084 -25.188 3.180 25.411
hybrid contribution -0.373 1.616 1.496 2.234
sum 0.711 -23.572 4.676 24.042
Atomic orbital electron populations
1.69927 1.04998 1.25316 1.56626 1.24843 0.95763 0.97818 1.01782
0.86073 0.78673 0.83240 0.77632 1.21437 1.21726 1.20538 1.19081
0.91267 0.82200 1.43306 0.90086 1.44234 1.01174 1.00986 1.86318
1.21847 0.85541 0.88088 1.01861 1.23453 0.85975 0.99070 0.90682
0.92574 1.86474 1.20064 1.82962 1.47275 1.22321 0.94527 0.77639
1.02146 0.87347 1.45822 1.51067 1.10280 1.28917 1.17744 0.79750
0.84745 0.83246 1.90842 1.47013 1.74051 1.26798 1.21235 1.05028
0.95881 0.97862 1.21990 0.93398 0.93618 0.94003 1.18776 1.01302
0.94098 0.98304 1.21064 0.98142 0.95256 0.95558 1.20946 0.99130
0.94231 0.99999 1.20998 0.95576 1.00447 0.93713 1.20839 1.00715
0.92221 0.98359 1.18678 0.93014 0.94283 0.89465 1.67570 1.24613
1.11398 1.18580 1.19184 0.89956 0.86388 0.84317 1.84716 1.35685
1.77002 1.29226 1.21851 0.95034 0.86318 0.96493 0.93593 0.91905
0.93431 0.77589 0.77169 0.83321 0.84719 0.85179 0.85005 0.84402
0.73132 0.93008 0.95927
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.38 10.36 55.49 0.57 -25.81 16
2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16
3 Si 0.91 21.88 29.56 -169.99 -5.02 16.85 16
4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16
7 C -0.23 -6.35 10.27 -15.06 -0.15 -6.50 16
8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16
9 N -0.60 -15.02 3.39 -170.07 -0.58 -15.59 16
10 C 0.15 3.52 5.16 -3.06 -0.02 3.51 16
11 C 0.07 1.22 3.97 -24.90 -0.10 1.12 16
12 H 0.06 0.86 8.00 -51.93 -0.42 0.44 16
13 O -0.56 -9.55 13.40 -35.23 -0.47 -10.02 16
14 C 0.14 2.55 3.15 -65.78 -0.21 2.34 16
15 H 0.11 2.33 7.54 -51.93 -0.39 1.93 16
16 N -0.71 -10.24 5.15 -52.76 -0.27 -10.51 16
17 C 0.56 8.69 7.77 -12.45 -0.10 8.59 16
18 O -0.51 -9.78 14.78 -16.67 -0.25 -10.03 16
19 C -0.19 -2.48 5.90 -104.71 -0.62 -3.10 16
20 C 0.00 -0.04 9.38 -38.46 -0.36 -0.40 16
21 C -0.12 -1.18 5.74 -106.80 -0.61 -1.80 16
22 C -0.08 -0.56 9.77 -39.47 -0.39 -0.95 16
23 C -0.13 -0.73 9.96 -39.93 -0.40 -1.13 16
24 C -0.09 -0.54 9.94 -39.93 -0.40 -0.94 16
25 C -0.10 -0.88 9.97 -39.47 -0.39 -1.27 16
26 C 0.17 1.87 6.61 -84.79 -0.56 1.31 16
27 N -0.50 -6.60 10.33 -10.76 -0.11 -6.71 16
28 C 0.40 5.40 7.74 -16.60 -0.13 5.28 16
29 O -0.46 -6.33 11.59 -39.89 -0.46 -6.80 16
30 C 0.13 2.70 6.93 -2.53 -0.02 2.68 16
31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
32 H 0.06 1.65 7.21 -51.93 -0.37 1.28 16
33 H 0.05 1.18 7.61 -51.93 -0.40 0.78 16
34 H 0.38 4.83 9.12 45.56 0.42 5.25 16
35 H 0.39 4.32 6.63 -40.82 -0.27 4.05 16
36 H 0.15 0.98 6.47 -52.49 -0.34 0.64 16
37 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16
38 H 0.13 0.44 8.06 -52.49 -0.42 0.01 16
39 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16
40 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16
41 H 0.41 3.93 9.06 45.56 0.41 4.34 16
42 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16
43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
LS Contribution 363.91 15.07 5.48 5.48
Total: -1.00 -36.05 363.91 -9.09 -45.14
By element:
Atomic # 1 Polarization: 12.94 SS G_CDS: -3.44 Total: 9.50 kcal
Atomic # 6 Polarization: 13.03 SS G_CDS: -4.54 Total: 8.49 kcal
Atomic # 7 Polarization: -58.24 SS G_CDS: -0.39 Total: -58.62 kcal
Atomic # 8 Polarization: -25.67 SS G_CDS: -1.18 Total: -26.85 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -36.05 -9.09 -45.14 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001077481664.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.322 kcal
(2) G-P(sol) polarization free energy of solvation -36.054 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.732 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.143 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.821 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds