Wall clock time and date at job start Sat Apr 11 2020 06:50:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86802 * 119.99854 * 2 1
4 4 H 1.48501 * 109.46907 * 274.98306 * 3 2 1
5 5 H 1.48496 * 109.47377 * 34.98451 * 3 2 1
6 6 H 1.48501 * 109.47212 * 154.98776 * 3 2 1
7 7 C 1.38817 * 120.00093 * 179.97438 * 2 1 3
8 8 H 1.07994 * 119.99525 * 187.06708 * 7 2 1
9 9 N 1.36938 * 119.99760 * 7.06129 * 7 2 1
10 10 C 1.47022 * 125.64896 * 354.88028 * 9 7 2
11 11 C 1.54328 * 107.26739 * 178.90272 * 10 9 7
12 12 H 1.09003 * 110.71839 * 96.16964 * 11 10 9
13 13 O 1.42907 * 110.71808 * 219.26562 * 11 10 9
14 14 C 1.55151 * 102.94504 * 337.80685 * 11 10 9
15 15 H 1.08996 * 111.00652 * 277.43106 * 14 11 10
16 16 N 1.46494 * 111.00557 * 153.57630 * 14 11 10
17 17 C 1.34781 * 120.00041 * 155.00157 * 16 14 11
18 18 O 1.21580 * 119.99973 * 359.97438 * 17 16 14
19 19 C 1.47564 * 119.99775 * 179.97438 * 17 16 14
20 20 C 1.38907 * 120.29743 * 359.72435 * 19 17 16
21 21 C 1.40560 * 118.06603 * 179.74080 * 20 19 17
22 22 C 1.40540 * 121.13374 * 180.20824 * 21 20 19
23 23 C 1.36150 * 119.64045 * 180.34548 * 22 21 20
24 24 C 1.39319 * 120.83241 * 359.97438 * 23 22 21
25 25 C 1.36150 * 121.07605 * 0.02562 * 24 23 22
26 26 C 1.40523 * 119.82660 * 0.02562 * 25 24 23
27 27 N 1.33813 * 120.74225 * 179.97438 * 26 25 24
28 28 C 1.31381 * 121.66538 * 180.02562 * 27 26 25
29 29 O 1.35411 * 119.31868 * 180.02562 * 28 27 26
30 30 C 1.47425 * 125.64396 * 174.83686 * 9 7 2
31 31 H 0.96998 * 120.00290 * 0.02562 * 1 2 3
32 32 H 1.08999 * 109.88197 * 59.48881 * 10 9 7
33 33 H 1.08997 * 110.01106 * 298.38732 * 10 9 7
34 34 H 0.96701 * 113.99683 * 296.15449 * 13 11 10
35 35 H 0.97006 * 120.00035 * 334.99820 * 16 14 11
36 36 H 1.08002 * 120.96740 * 359.97438 * 20 19 17
37 37 H 1.07998 * 120.17850 * 0.32116 * 22 21 20
38 38 H 1.07995 * 119.58030 * 180.02562 * 23 22 21
39 39 H 1.08007 * 119.46471 * 180.02562 * 24 23 22
40 40 H 1.08008 * 120.08495 * 179.97438 * 25 24 23
41 41 H 0.96699 * 114.00133 * 270.01727 * 29 28 27
42 42 H 1.08996 * 110.36845 * 323.00255 * 30 9 7
43 43 H 1.09000 * 110.36879 * 85.33004 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.3923 2.1072 -1.3948
5 1 1.5043 2.6200 0.8027
6 1 3.5965 1.4121 0.5920
7 6 2.0103 -1.2022 0.0005
8 1 3.0841 -1.2056 0.1156
9 7 1.3334 -2.3836 -0.1447
10 6 -0.1281 -2.5322 -0.2032
11 6 -0.4285 -4.0332 -0.3998
12 1 -0.6384 -4.5129 0.5562
13 8 -1.5187 -4.2162 -1.3054
14 6 0.8921 -4.5752 -1.0077
15 1 0.9282 -4.3997 -2.0828
16 7 1.0650 -5.9978 -0.7038
17 6 1.8218 -6.7714 -1.5072
18 8 2.3605 -6.2886 -2.4844
19 6 1.9964 -8.2043 -1.2008
20 6 1.3883 -8.7609 -0.0828
21 6 1.5815 -10.1316 0.1615
22 6 0.9929 -10.7620 1.2711
23 6 1.2060 -12.0900 1.4825
24 6 2.0004 -12.8332 0.6121
25 6 2.5858 -12.2546 -0.4725
26 6 2.3911 -10.8860 -0.7249
27 7 2.9581 -10.2985 -1.7851
28 6 2.7886 -9.0205 -2.0380
29 8 3.3844 -8.4750 -3.1248
30 6 1.9496 -3.7171 -0.2693
31 1 -0.4850 0.8400 -0.0004
32 1 -0.5254 -1.9616 -1.0427
33 1 -0.5760 -2.1833 0.7272
34 1 -2.3588 -3.8583 -0.9871
35 1 0.6349 -6.3831 0.0757
36 1 0.7816 -8.1589 0.5775
37 1 0.3752 -10.1960 1.9526
38 1 0.7529 -12.5735 2.3353
39 1 2.1543 -13.8854 0.8007
40 1 3.1989 -12.8458 -1.1366
41 1 4.2700 -8.1261 -2.9542
42 1 2.8666 -3.6581 -0.8554
43 1 2.1548 -4.1338 0.7168
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001077481664.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:58
Heat of formation + Delta-G solvation = -58.617124 kcal
Electronic energy + Delta-G solvation = -29158.167209 eV
Core-core repulsion = 24975.568462 eV
Total energy + Delta-G solvation = -4182.598747 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.22133 -40.87064 -39.62124 -38.87688 -36.87739 -36.67818 -35.67130 -34.70926
-33.55625 -31.59179 -30.74324 -30.08059 -28.73866 -26.54658 -25.68838 -24.71659
-23.21708 -22.62915 -22.12733 -21.80085 -20.17257 -19.50386 -19.11033 -18.57691
-18.24229 -17.59649 -17.22532 -16.84607 -16.52236 -16.21545 -15.84189 -15.75776
-15.63689 -15.28684 -15.06988 -14.76842 -14.50868 -14.48722 -14.36009 -14.20473
-13.73512 -13.19529 -13.16485 -12.99730 -12.78171 -12.74684 -12.63952 -12.43513
-12.39586 -12.08414 -11.90244 -11.69452 -11.55135 -11.36192 -10.95295 -10.76320
-10.53799 -10.25647 -9.76579 -9.28208 -8.96870 -7.90980 -5.26261 -0.88468
-0.52304 0.81314 1.41913 1.45125 1.48178 1.55933 1.85325 2.12646
2.46429 2.51557 2.98726 3.11690 3.27671 3.33097 3.45876 3.53352
3.55612 3.73853 3.86443 4.00564 4.05867 4.18501 4.21114 4.30993
4.34381 4.45051 4.52451 4.56109 4.63236 4.82694 4.87893 4.98195
5.04970 5.29616 5.34311 5.37087 5.38756 5.46921 5.48497 5.66282
5.84443 6.13099 6.39015 6.50825 6.75817 6.86836 7.04001 7.11652
7.68776 8.31180 9.19336
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.019528 B = 0.002394 C = 0.002301
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1433.502870 B =11691.197280 C =12163.226175
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.946 5.946
2 C -0.060 4.060
3 Si 0.977 3.023
4 H -0.291 1.291
5 H -0.290 1.290
6 H -0.267 1.267
7 C -0.247 4.247
8 H 0.082 0.918
9 N -0.622 5.622
10 C 0.159 3.841
11 C 0.091 3.909
12 H 0.100 0.900
13 O -0.570 6.570
14 C 0.153 3.847
15 H 0.072 0.928
16 N -0.693 5.693
17 C 0.563 3.437
18 O -0.558 6.558
19 C -0.219 4.219
20 C 0.021 3.979
21 C -0.136 4.136
22 C -0.079 4.079
23 C -0.120 4.120
24 C -0.068 4.068
25 C -0.129 4.129
26 C 0.143 3.857
27 N -0.525 5.525
28 C 0.376 3.624
29 O -0.480 6.480
30 C 0.132 3.868
31 H 0.250 0.750
32 H 0.021 0.979
33 H 0.027 0.973
34 H 0.397 0.603
35 H 0.415 0.585
36 H 0.185 0.815
37 H 0.168 0.832
38 H 0.166 0.834
39 H 0.164 0.836
40 H 0.139 0.861
41 H 0.417 0.583
42 H 0.035 0.965
43 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.773 -27.593 8.154 28.783
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.594 5.594
2 C -0.253 4.253
3 Si 0.805 3.195
4 H -0.218 1.218
5 H -0.217 1.217
6 H -0.192 1.192
7 C -0.376 4.376
8 H 0.100 0.900
9 N -0.350 5.350
10 C 0.034 3.966
11 C 0.031 3.969
12 H 0.117 0.883
13 O -0.378 6.378
14 C 0.047 3.953
15 H 0.090 0.910
16 N -0.346 5.346
17 C 0.350 3.650
18 O -0.436 6.436
19 C -0.226 4.226
20 C -0.005 4.005
21 C -0.138 4.138
22 C -0.097 4.097
23 C -0.137 4.137
24 C -0.088 4.088
25 C -0.148 4.148
26 C 0.022 3.978
27 N -0.246 5.246
28 C 0.181 3.819
29 O -0.290 6.290
30 C 0.005 3.995
31 H 0.059 0.941
32 H 0.039 0.961
33 H 0.046 0.954
34 H 0.247 0.753
35 H 0.253 0.747
36 H 0.203 0.797
37 H 0.185 0.815
38 H 0.184 0.816
39 H 0.182 0.818
40 H 0.157 0.843
41 H 0.279 0.721
42 H 0.053 0.947
43 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 0.040 -27.998 6.290 28.696
hybrid contribution -0.067 2.235 0.637 2.325
sum -0.027 -25.764 6.926 26.678
Atomic orbital electron populations
1.70119 1.06147 1.25569 1.57566 1.25644 0.96694 1.00899 1.02108
0.85087 0.78006 0.79218 0.77188 1.21799 1.21650 1.19189 1.19424
0.91693 0.83608 1.42831 0.90021 1.44499 1.02299 1.01902 1.86254
1.21653 0.84423 0.91516 0.99046 1.23179 0.86010 0.95234 0.92476
0.88265 1.86443 1.20871 1.82814 1.47690 1.21775 0.94217 0.79596
0.99726 0.90959 1.45485 1.51100 1.08387 1.29627 1.18136 0.78663
0.85783 0.82386 1.90817 1.48861 1.75135 1.28834 1.20880 1.07764
0.93967 0.99960 1.22370 0.91558 0.94052 0.92495 1.19019 1.01571
0.94024 0.99178 1.21469 0.97608 0.96006 0.94662 1.21439 0.97949
0.93921 1.00439 1.21455 0.93349 1.01994 0.91966 1.21020 1.02305
0.91457 0.99975 1.19180 0.93614 0.95551 0.89438 1.67537 1.25793
1.11217 1.20005 1.19338 0.90857 0.86926 0.84745 1.84663 1.36631
1.77314 1.30377 1.21943 0.94914 0.85118 0.97523 0.94112 0.96095
0.95443 0.75312 0.74656 0.79743 0.81483 0.81638 0.81838 0.84340
0.72078 0.94687 0.93515
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -55.56 10.36 21.65 0.22 -55.34 16
2 C -0.06 -3.38 5.48 84.86 0.46 -2.92 16
3 Si 0.98 45.64 29.56 68.60 2.03 47.66 16
4 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16
5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16
6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16
7 C -0.25 -13.85 10.27 84.03 0.86 -12.99 16
8 H 0.08 4.43 7.84 -2.91 -0.02 4.40 16
9 N -0.62 -31.71 3.39 -691.97 -2.35 -34.06 16
10 C 0.16 7.50 5.16 86.73 0.45 7.94 16
11 C 0.09 3.12 3.97 31.78 0.13 3.25 16
12 H 0.10 2.63 8.00 -2.39 -0.02 2.61 16
13 O -0.57 -18.54 13.40 -148.98 -2.00 -20.53 16
14 C 0.15 5.59 3.15 46.38 0.15 5.74 16
15 H 0.07 3.21 7.54 -2.39 -0.02 3.20 16
16 N -0.69 -18.96 5.15 -439.10 -2.26 -21.22 16
17 C 0.56 17.55 7.77 86.70 0.67 18.23 16
18 O -0.56 -22.41 14.78 17.04 0.25 -22.16 16
19 C -0.22 -5.55 5.90 -19.92 -0.12 -5.67 16
20 C 0.02 0.35 9.38 23.00 0.22 0.57 16
21 C -0.14 -2.25 5.74 -21.28 -0.12 -2.37 16
22 C -0.08 -0.71 9.77 22.35 0.22 -0.49 16
23 C -0.12 -0.77 9.96 22.04 0.22 -0.55 16
24 C -0.07 -0.57 9.94 22.04 0.22 -0.35 16
25 C -0.13 -1.98 9.97 22.34 0.22 -1.76 16
26 C 0.14 3.06 6.61 40.27 0.27 3.32 16
27 N -0.53 -14.23 10.33 -301.41 -3.11 -17.35 16
28 C 0.38 10.72 7.74 85.50 0.66 11.38 16
29 O -0.48 -14.45 11.59 -66.04 -0.77 -15.22 16
30 C 0.13 5.46 6.93 86.86 0.60 6.06 16
31 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16
32 H 0.02 1.14 7.21 -2.39 -0.02 1.13 16
33 H 0.03 1.38 7.61 -2.39 -0.02 1.36 16
34 H 0.40 9.44 9.12 -74.06 -0.68 8.77 16
35 H 0.41 7.61 6.63 -92.70 -0.62 7.00 16
36 H 0.19 1.56 6.47 -2.91 -0.02 1.54 16
37 H 0.17 0.41 8.06 -2.91 -0.02 0.38 16
38 H 0.17 -0.02 8.06 -2.91 -0.02 -0.05 16
39 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16
40 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16
41 H 0.42 9.29 9.06 -74.06 -0.67 8.61 16
42 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16
43 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
Total: -1.00 -83.91 363.91 -3.73 -87.64
By element:
Atomic # 1 Polarization: 22.03 SS G_CDS: -0.86 Total: 21.17 kcal
Atomic # 6 Polarization: 24.29 SS G_CDS: 5.11 Total: 29.40 kcal
Atomic # 7 Polarization: -120.47 SS G_CDS: -7.50 Total: -127.97 kcal
Atomic # 8 Polarization: -55.40 SS G_CDS: -2.51 Total: -57.91 kcal
Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal
Total: -83.91 -3.73 -87.64 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001077481664.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.027 kcal
(2) G-P(sol) polarization free energy of solvation -83.911 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.885 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.733 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.644 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.617 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds