Wall clock time and date at job start Sat Apr 11 2020 06:50:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86794 * 120.00464 * 2 1
4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1
5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1
6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1
7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1
10 10 O 1.42897 * 110.63957 * 61.40714 * 9 7 2
11 11 C 1.55160 * 110.71656 * 298.26718 * 9 7 2
12 12 C 1.54913 * 101.57624 * 206.13323 * 11 9 7
13 13 N 1.47423 * 104.83089 * 37.01185 * 12 11 9
14 14 C 1.34780 * 125.64675 * 155.83077 * 13 12 11
15 15 O 1.21284 * 120.00326 * 180.02562 * 14 13 12
16 16 C 1.50703 * 120.00093 * 0.02957 * 14 13 12
17 17 C 1.50701 * 109.47210 * 179.97438 * 16 14 13
18 18 N 1.30383 * 126.18585 * 89.68731 * 17 16 14
19 19 N 1.28660 * 109.52320 * 179.88707 * 18 17 16
20 20 C 1.31228 * 109.25026 * 0.37909 * 19 18 17
21 21 C 1.47853 * 126.38035 * 179.75002 * 20 19 18
22 22 C 1.39554 * 120.13980 * 179.75451 * 21 20 19
23 23 C 1.37967 * 119.85127 * 179.69577 * 22 21 20
24 24 C 1.38353 * 120.14147 * 0.57596 * 23 22 21
25 25 C 1.38347 * 120.29263 * 359.72188 * 24 23 22
26 26 C 1.37964 * 120.14352 * 359.97205 * 25 24 23
27 27 O 1.34401 * 126.18693 * 269.99741 * 17 16 14
28 28 C 1.47020 * 108.70489 * 335.86786 * 13 12 11
29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3
30 30 H 0.96698 * 114.00670 * 300.69875 * 10 9 7
31 31 H 1.08989 * 111.00516 * 324.20630 * 11 9 7
32 32 H 1.08995 * 111.00355 * 88.06613 * 11 9 7
33 33 H 1.09003 * 110.36279 * 155.84748 * 12 11 9
34 34 H 1.08993 * 110.36858 * 278.06200 * 12 11 9
35 35 H 1.09001 * 109.46622 * 299.99685 * 16 14 13
36 36 H 1.09000 * 109.47474 * 59.99408 * 16 14 13
37 37 H 1.07997 * 120.07673 * 359.97438 * 22 21 20
38 38 H 1.08004 * 119.92833 * 180.31264 * 23 22 21
39 39 H 1.08008 * 119.85103 * 179.69306 * 24 23 22
40 40 H 1.08004 * 119.93334 * 180.02562 * 25 24 23
41 41 H 1.08000 * 120.07418 * 180.02562 * 26 25 24
42 42 H 1.09002 * 109.88085 * 241.63975 * 28 13 12
43 43 H 1.09002 * 109.87937 * 120.47931 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7092 1.3462 0.0006
5 1 1.8906 2.3963 -1.2126
6 1 1.8905 2.3965 1.2124
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 -0.0054
10 8 0.4499 -2.6130 -1.1832
11 6 0.3758 -2.6334 1.2688
12 6 0.2712 -4.1723 1.4134
13 7 1.5924 -4.6806 1.0020
14 6 2.1329 -5.8570 1.3769
15 8 3.2326 -6.1744 0.9757
16 6 1.3709 -6.7781 2.2945
17 6 2.1894 -8.0160 2.5567
18 7 3.0513 -8.1789 3.5214
19 7 3.5634 -9.3567 3.4461
20 6 3.0476 -9.9878 2.4176
21 6 3.3720 -11.3621 1.9792
22 6 2.7377 -11.9097 0.8633
23 6 3.0496 -13.1904 0.4556
24 6 3.9801 -13.9356 1.1577
25 6 4.6079 -13.4009 2.2685
26 6 4.3097 -12.1192 2.6829
27 8 2.1673 -9.1495 1.8350
28 6 2.2231 -3.6915 0.1158
29 1 -0.4850 0.8401 -0.0004
30 1 -0.2040 -1.9078 -1.2839
31 1 0.8733 -2.1928 2.1327
32 1 -0.6071 -2.1877 1.1164
33 1 0.0663 -4.4428 2.4493
34 1 -0.5080 -4.5627 0.7589
35 1 1.1707 -6.2680 3.2368
36 1 0.4277 -7.0591 1.8260
37 1 2.0077 -11.3307 0.3172
38 1 2.5631 -13.6135 -0.4108
39 1 4.2170 -14.9396 0.8374
40 1 5.3337 -13.9877 2.8120
41 1 4.8009 -11.7027 3.5499
42 1 2.3953 -4.1308 -0.8668
43 1 3.1675 -3.3577 0.5456
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001362829941.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:51
Heat of formation + Delta-G solvation = -13.379908 kcal
Electronic energy + Delta-G solvation = -28574.750104 eV
Core-core repulsion = 24394.112991 eV
Total energy + Delta-G solvation = -4180.637114 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-44.24202 -39.71487 -39.45026 -37.45939 -36.26432 -34.47070 -33.62361 -32.27746
-31.78869 -31.43538 -29.89477 -28.75188 -27.96211 -25.23205 -24.55941 -23.54330
-22.60452 -22.05763 -21.91693 -19.93862 -19.07503 -18.15278 -17.71738 -17.26506
-16.77996 -16.51178 -16.18377 -15.82961 -15.40765 -15.02592 -14.98506 -14.39661
-14.30412 -14.14668 -13.89247 -13.87172 -13.34811 -13.07446 -12.82949 -12.48251
-12.22234 -12.12867 -12.04343 -11.93271 -11.65724 -11.58222 -11.49313 -11.42694
-11.05955 -10.97007 -10.71970 -10.52546 -10.50589 -10.19897 -9.72710 -9.43391
-9.43206 -8.82365 -8.74110 -8.31447 -8.20166 -6.35517 -4.43077 0.18861
0.93390 1.41391 1.97239 2.33316 2.76475 3.15499 3.23350 3.25483
3.31244 3.37945 3.58343 4.10977 4.22289 4.43003 4.49548 4.59135
4.66787 4.75034 4.91553 4.92418 4.95863 5.09054 5.21306 5.24816
5.39532 5.42477 5.46852 5.58382 5.62657 5.78656 5.89782 5.95867
5.98576 6.02600 6.08649 6.34333 6.41753 6.55816 6.78766 6.84523
7.21794 7.27083 7.66948 7.86789 7.93124 8.16535 8.33555 8.60216
9.23069 9.32058 10.71916
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.028727 B = 0.001951 C = 0.001934
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 974.442004 B =14345.332921 C =14475.052076
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.072 3.928
3 Si 0.903 3.097
4 H -0.271 1.271
5 H -0.282 1.282
6 H -0.282 1.282
7 C -0.535 4.535
8 H 0.065 0.935
9 C 0.247 3.753
10 O -0.586 6.586
11 C -0.134 4.134
12 C 0.089 3.911
13 N -0.602 5.602
14 C 0.527 3.473
15 O -0.544 6.544
16 C -0.045 4.045
17 C 0.199 3.801
18 N -0.271 5.271
19 N -0.272 5.272
20 C 0.202 3.798
21 C -0.019 4.019
22 C -0.084 4.084
23 C -0.121 4.121
24 C -0.098 4.098
25 C -0.121 4.121
26 C -0.068 4.068
27 O -0.214 6.214
28 C 0.124 3.876
29 H 0.268 0.732
30 H 0.384 0.616
31 H 0.069 0.931
32 H 0.090 0.910
33 H 0.064 0.936
34 H 0.067 0.933
35 H 0.142 0.858
36 H 0.127 0.873
37 H 0.133 0.867
38 H 0.132 0.868
39 H 0.129 0.871
40 H 0.134 0.866
41 H 0.140 0.860
42 H 0.063 0.937
43 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.692 -22.719 4.393 23.150
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.130 4.130
3 Si 0.730 3.270
4 H -0.196 1.196
5 H -0.207 1.207
6 H -0.208 1.208
7 C -0.573 4.573
8 H 0.084 0.916
9 C 0.206 3.794
10 O -0.395 6.395
11 C -0.173 4.173
12 C -0.034 4.034
13 N -0.335 5.335
14 C 0.313 3.687
15 O -0.422 6.422
16 C -0.086 4.086
17 C -0.012 4.012
18 N -0.118 5.118
19 N -0.119 5.119
20 C -0.005 4.005
21 C -0.021 4.021
22 C -0.104 4.104
23 C -0.139 4.139
24 C -0.117 4.117
25 C -0.139 4.139
26 C -0.088 4.088
27 O -0.093 6.093
28 C 0.002 3.998
29 H 0.078 0.922
30 H 0.234 0.766
31 H 0.088 0.912
32 H 0.109 0.891
33 H 0.082 0.918
34 H 0.086 0.914
35 H 0.160 0.840
36 H 0.145 0.855
37 H 0.151 0.849
38 H 0.150 0.850
39 H 0.147 0.853
40 H 0.152 0.848
41 H 0.158 0.842
42 H 0.081 0.919
43 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 0.851 -23.068 5.167 23.655
hybrid contribution -0.759 1.365 -0.916 1.811
sum 0.092 -21.703 4.251 22.115
Atomic orbital electron populations
1.69692 1.05930 1.27635 1.50266 1.24989 0.95059 0.99585 0.93402
0.86352 0.80234 0.82632 0.77736 1.19553 1.20740 1.20790 1.21552
0.93792 0.90096 1.51891 0.91642 1.19461 0.86933 0.90665 0.82307
1.86116 1.53842 1.54380 1.45165 1.23308 1.03076 0.89848 1.01055
1.22643 0.84003 0.98170 0.98555 1.48565 1.19587 1.17462 1.47849
1.19474 0.86200 0.81286 0.81789 1.90746 1.20419 1.74238 1.56822
1.20169 0.97538 0.86993 1.03874 1.27012 0.97917 0.87918 0.88340
1.74393 1.07515 1.09489 1.20443 1.74670 1.21129 0.99975 1.16174
1.25377 0.89996 0.93887 0.91274 1.17250 1.00625 0.86140 0.98114
1.21316 0.98521 0.95826 0.94739 1.21114 0.98472 0.93909 1.00384
1.21419 0.95416 1.00023 0.94806 1.21134 1.00426 0.95002 0.97347
1.21227 0.94910 0.93606 0.99016 1.84789 1.51616 1.23113 1.49773
1.22134 0.96856 0.88136 0.92649 0.92199 0.76572 0.91218 0.89132
0.91787 0.91428 0.84049 0.85482 0.84938 0.84964 0.85268 0.84816
0.84180 0.91887 0.90655
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -22.15 10.66 55.43 0.59 -21.55 16
2 C 0.07 1.80 5.27 -17.82 -0.09 1.71 16
3 Si 0.90 19.86 29.54 -169.99 -5.02 14.83 16
4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16
5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
7 C -0.54 -13.56 8.21 -34.44 -0.28 -13.85 16
8 H 0.07 1.69 7.57 -52.49 -0.40 1.29 16
9 C 0.25 5.67 0.85 -89.94 -0.08 5.59 16
10 O -0.59 -14.01 13.09 -35.23 -0.46 -14.48 16
11 C -0.13 -2.69 5.48 -24.58 -0.13 -2.82 16
12 C 0.09 1.42 6.68 -2.53 -0.02 1.40 16
13 N -0.60 -11.08 3.33 -170.52 -0.57 -11.64 16
14 C 0.53 9.39 7.84 -10.98 -0.09 9.31 16
15 O -0.54 -11.96 16.36 5.55 0.09 -11.87 16
16 C -0.04 -0.57 5.33 -29.03 -0.15 -0.73 16
17 C 0.20 3.07 6.96 -12.89 -0.09 2.98 16
18 N -0.27 -4.67 12.22 32.58 0.40 -4.27 16
19 N -0.27 -4.45 11.92 32.07 0.38 -4.07 16
20 C 0.20 2.93 7.99 -13.88 -0.11 2.82 16
21 C -0.02 -0.22 5.87 -104.98 -0.62 -0.84 16
22 C -0.08 -0.79 9.73 -39.19 -0.38 -1.17 16
23 C -0.12 -0.85 10.03 -39.64 -0.40 -1.24 16
24 C -0.10 -0.61 10.04 -39.50 -0.40 -1.01 16
25 C -0.12 -0.84 10.03 -39.64 -0.40 -1.23 16
26 C -0.07 -0.64 9.70 -39.19 -0.38 -1.02 16
27 O -0.21 -3.21 10.67 4.06 0.04 -3.17 16
28 C 0.12 2.68 6.22 -3.07 -0.02 2.66 16
29 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16
30 H 0.38 9.19 7.41 45.56 0.34 9.53 16
31 H 0.07 1.45 8.04 -51.94 -0.42 1.03 16
32 H 0.09 1.89 7.55 -51.93 -0.39 1.49 16
33 H 0.06 0.80 7.48 -51.93 -0.39 0.41 16
34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
35 H 0.14 1.44 7.85 -51.93 -0.41 1.03 16
36 H 0.13 1.20 8.14 -51.93 -0.42 0.77 16
37 H 0.13 1.15 7.94 -52.49 -0.42 0.74 16
38 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16
39 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16
40 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16
41 H 0.14 1.28 7.87 -52.49 -0.41 0.87 16
42 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16
43 H 0.08 1.69 7.66 -51.93 -0.40 1.29 16
LS Contribution 371.53 15.07 5.60 5.60
Total: -1.00 -31.62 371.53 -7.14 -38.76
By element:
Atomic # 1 Polarization: 13.86 SS G_CDS: -4.56 Total: 9.30 kcal
Atomic # 6 Polarization: 6.20 SS G_CDS: -3.64 Total: 2.56 kcal
Atomic # 7 Polarization: -42.34 SS G_CDS: 0.80 Total: -41.54 kcal
Atomic # 8 Polarization: -29.19 SS G_CDS: -0.33 Total: -29.51 kcal
Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -31.62 -7.14 -38.76 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362829941.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.381 kcal
(2) G-P(sol) polarization free energy of solvation -31.621 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.240 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.380 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds