Wall clock time and date at job start Sat Apr 11 2020 06:50:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86794 * 120.00464 * 2 1
4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1
5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1
6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1
7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1
10 10 O 1.42897 * 110.63957 * 61.40714 * 9 7 2
11 11 C 1.55160 * 110.71656 * 298.26718 * 9 7 2
12 12 C 1.54913 * 101.57624 * 206.13323 * 11 9 7
13 13 N 1.47423 * 104.83089 * 37.01185 * 12 11 9
14 14 C 1.34780 * 125.64675 * 155.83077 * 13 12 11
15 15 O 1.21284 * 120.00326 * 180.02562 * 14 13 12
16 16 C 1.50703 * 120.00093 * 0.02957 * 14 13 12
17 17 C 1.50701 * 109.47210 * 179.97438 * 16 14 13
18 18 N 1.30383 * 126.18585 * 89.68731 * 17 16 14
19 19 N 1.28660 * 109.52320 * 179.88707 * 18 17 16
20 20 C 1.31228 * 109.25026 * 0.37909 * 19 18 17
21 21 C 1.47853 * 126.38035 * 179.75002 * 20 19 18
22 22 C 1.39554 * 120.13980 * 179.75451 * 21 20 19
23 23 C 1.37967 * 119.85127 * 179.69577 * 22 21 20
24 24 C 1.38353 * 120.14147 * 0.57596 * 23 22 21
25 25 C 1.38347 * 120.29263 * 359.72188 * 24 23 22
26 26 C 1.37964 * 120.14352 * 359.97205 * 25 24 23
27 27 O 1.34401 * 126.18693 * 269.99741 * 17 16 14
28 28 C 1.47020 * 108.70489 * 335.86786 * 13 12 11
29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3
30 30 H 0.96698 * 114.00670 * 300.69875 * 10 9 7
31 31 H 1.08989 * 111.00516 * 324.20630 * 11 9 7
32 32 H 1.08995 * 111.00355 * 88.06613 * 11 9 7
33 33 H 1.09003 * 110.36279 * 155.84748 * 12 11 9
34 34 H 1.08993 * 110.36858 * 278.06200 * 12 11 9
35 35 H 1.09001 * 109.46622 * 299.99685 * 16 14 13
36 36 H 1.09000 * 109.47474 * 59.99408 * 16 14 13
37 37 H 1.07997 * 120.07673 * 359.97438 * 22 21 20
38 38 H 1.08004 * 119.92833 * 180.31264 * 23 22 21
39 39 H 1.08008 * 119.85103 * 179.69306 * 24 23 22
40 40 H 1.08004 * 119.93334 * 180.02562 * 25 24 23
41 41 H 1.08000 * 120.07418 * 180.02562 * 26 25 24
42 42 H 1.09002 * 109.88085 * 241.63975 * 28 13 12
43 43 H 1.09002 * 109.87937 * 120.47931 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7092 1.3462 0.0006
5 1 1.8906 2.3963 -1.2126
6 1 1.8905 2.3965 1.2124
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 -0.0054
10 8 0.4499 -2.6130 -1.1832
11 6 0.3758 -2.6334 1.2688
12 6 0.2712 -4.1723 1.4134
13 7 1.5924 -4.6806 1.0020
14 6 2.1329 -5.8570 1.3769
15 8 3.2326 -6.1744 0.9757
16 6 1.3709 -6.7781 2.2945
17 6 2.1894 -8.0160 2.5567
18 7 3.0513 -8.1789 3.5214
19 7 3.5634 -9.3567 3.4461
20 6 3.0476 -9.9878 2.4176
21 6 3.3720 -11.3621 1.9792
22 6 2.7377 -11.9097 0.8633
23 6 3.0496 -13.1904 0.4556
24 6 3.9801 -13.9356 1.1577
25 6 4.6079 -13.4009 2.2685
26 6 4.3097 -12.1192 2.6829
27 8 2.1673 -9.1495 1.8350
28 6 2.2231 -3.6915 0.1158
29 1 -0.4850 0.8401 -0.0004
30 1 -0.2040 -1.9078 -1.2839
31 1 0.8733 -2.1928 2.1327
32 1 -0.6071 -2.1877 1.1164
33 1 0.0663 -4.4428 2.4493
34 1 -0.5080 -4.5627 0.7589
35 1 1.1707 -6.2680 3.2368
36 1 0.4277 -7.0591 1.8260
37 1 2.0077 -11.3307 0.3172
38 1 2.5631 -13.6135 -0.4108
39 1 4.2170 -14.9396 0.8374
40 1 5.3337 -13.9877 2.8120
41 1 4.8009 -11.7027 3.5499
42 1 2.3953 -4.1308 -0.8668
43 1 3.1675 -3.3577 0.5456
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001362829941.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:50
Heat of formation + Delta-G solvation = -38.818797 kcal
Electronic energy + Delta-G solvation = -28575.853217 eV
Core-core repulsion = 24394.112991 eV
Total energy + Delta-G solvation = -4181.740227 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-45.36119 -41.19339 -40.09293 -39.10201 -37.40786 -36.17595 -34.64028 -34.20441
-32.74631 -32.03740 -31.39707 -30.18743 -29.26641 -26.97265 -25.51794 -24.66057
-23.83768 -23.01515 -22.75479 -21.62659 -20.51672 -19.23802 -18.99519 -18.82607
-17.89964 -17.72283 -17.27238 -16.93187 -16.84532 -16.58706 -16.03300 -15.91345
-15.50674 -15.24915 -14.95633 -14.75276 -14.46962 -14.21140 -14.01566 -13.87273
-13.65164 -13.54192 -13.29183 -13.23866 -13.14391 -13.11795 -12.68391 -12.62473
-12.43454 -12.28443 -12.26195 -12.00892 -11.98392 -11.55498 -11.28612 -11.06637
-10.64583 -10.14085 -10.03367 -9.73140 -9.66045 -8.26076 -6.39688 -0.67487
0.34027 0.44826 0.94878 1.26640 1.38847 1.39418 1.44190 1.53357
1.92123 2.38619 2.54245 2.74236 2.99382 3.11949 3.34547 3.61776
3.81969 3.90605 3.92496 3.98468 4.04070 4.08714 4.24277 4.25950
4.28033 4.40282 4.41460 4.47557 4.52515 4.56937 4.70248 4.80143
4.90100 5.01566 5.16713 5.18997 5.32445 5.38477 5.45622 5.47999
5.57517 5.77039 5.86642 6.06424 6.44441 6.63549 6.91449 7.02699
7.30704 7.40588 8.79695
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.028727 B = 0.001951 C = 0.001934
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 974.442004 B =14345.332921 C =14475.052076
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.040 3.960
3 Si 0.955 3.045
4 H -0.279 1.279
5 H -0.278 1.278
6 H -0.275 1.275
7 C -0.564 4.564
8 H 0.047 0.953
9 C 0.234 3.766
10 O -0.592 6.592
11 C -0.127 4.127
12 C 0.096 3.904
13 N -0.602 5.602
14 C 0.525 3.475
15 O -0.594 6.594
16 C -0.032 4.032
17 C 0.190 3.810
18 N -0.301 5.301
19 N -0.306 5.306
20 C 0.212 3.788
21 C -0.055 4.055
22 C -0.093 4.093
23 C -0.120 4.120
24 C -0.085 4.085
25 C -0.119 4.119
26 C -0.079 4.079
27 O -0.220 6.220
28 C 0.129 3.871
29 H 0.272 0.728
30 H 0.381 0.619
31 H 0.058 0.942
32 H 0.083 0.917
33 H 0.114 0.886
34 H 0.085 0.915
35 H 0.176 0.824
36 H 0.171 0.829
37 H 0.132 0.868
38 H 0.160 0.840
39 H 0.166 0.834
40 H 0.162 0.838
41 H 0.133 0.867
42 H 0.044 0.956
43 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.941 -25.031 4.719 25.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.162 4.162
3 Si 0.781 3.219
4 H -0.204 1.204
5 H -0.204 1.204
6 H -0.200 1.200
7 C -0.602 4.602
8 H 0.066 0.934
9 C 0.194 3.806
10 O -0.401 6.401
11 C -0.165 4.165
12 C -0.025 4.025
13 N -0.334 5.334
14 C 0.313 3.687
15 O -0.476 6.476
16 C -0.072 4.072
17 C -0.022 4.022
18 N -0.147 5.147
19 N -0.152 5.152
20 C 0.004 3.996
21 C -0.057 4.057
22 C -0.113 4.113
23 C -0.138 4.138
24 C -0.103 4.103
25 C -0.137 4.137
26 C -0.098 4.098
27 O -0.099 6.099
28 C 0.006 3.994
29 H 0.082 0.918
30 H 0.231 0.769
31 H 0.077 0.923
32 H 0.102 0.898
33 H 0.132 0.868
34 H 0.103 0.897
35 H 0.193 0.807
36 H 0.188 0.812
37 H 0.150 0.850
38 H 0.178 0.822
39 H 0.183 0.817
40 H 0.180 0.820
41 H 0.151 0.849
42 H 0.062 0.938
43 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -0.422 -25.383 5.522 25.980
hybrid contribution -0.302 1.957 -1.106 2.268
sum -0.724 -23.426 4.417 23.849
Atomic orbital electron populations
1.69731 1.06291 1.28342 1.49706 1.25519 0.95894 1.01674 0.93077
0.85557 0.78693 0.79710 0.77923 1.20426 1.20372 1.20011 1.21745
0.93313 0.91938 1.53178 0.93442 1.19578 0.87556 0.90109 0.83311
1.86100 1.53836 1.54150 1.46031 1.23084 1.01589 0.93135 0.98739
1.22761 0.82911 0.94846 1.01974 1.48570 1.20267 1.17274 1.47305
1.20314 0.85767 0.81133 0.81459 1.90726 1.22892 1.75237 1.58727
1.20341 0.97555 0.84919 1.04369 1.27457 0.97944 0.88664 0.88087
1.74290 1.08369 1.10174 1.21855 1.74593 1.22575 1.00297 1.17767
1.26095 0.88605 0.94661 0.90252 1.17517 1.02933 0.85206 1.00081
1.21465 0.98570 0.97008 0.94227 1.21488 0.98386 0.92827 1.01054
1.21898 0.93680 1.01229 0.93514 1.21496 1.00576 0.93936 0.97654
1.21348 0.94790 0.94735 0.98965 1.84792 1.51941 1.23279 1.49916
1.21804 0.96336 0.88743 0.92468 0.91822 0.76872 0.92341 0.89849
0.86794 0.89691 0.80666 0.81153 0.85008 0.82212 0.81692 0.82042
0.84934 0.93775 0.92493
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -44.33 10.66 21.45 0.23 -44.10 16
2 C 0.04 2.01 5.27 84.66 0.45 2.46 16
3 Si 0.96 40.91 29.54 68.60 2.03 42.94 16
4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16
5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16
6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16
7 C -0.56 -29.32 8.21 25.60 0.21 -29.11 16
8 H 0.05 2.56 7.57 -2.91 -0.02 2.54 16
9 C 0.23 10.94 0.85 -10.35 -0.01 10.93 16
10 O -0.59 -28.64 13.09 -148.98 -1.95 -30.59 16
11 C -0.13 -4.97 5.48 31.99 0.18 -4.79 16
12 C 0.10 2.80 6.68 86.86 0.58 3.38 16
13 N -0.60 -21.59 3.33 -811.80 -2.70 -24.29 16
14 C 0.52 18.27 7.84 87.66 0.69 18.96 16
15 O -0.59 -26.75 16.36 -3.04 -0.05 -26.80 16
16 C -0.03 -0.73 5.33 29.10 0.16 -0.58 16
17 C 0.19 5.76 6.96 88.32 0.62 6.38 16
18 N -0.30 -10.51 12.22 -165.34 -2.02 -12.53 16
19 N -0.31 -10.39 11.92 -166.31 -1.98 -12.37 16
20 C 0.21 6.31 7.99 87.33 0.70 7.01 16
21 C -0.06 -1.26 5.87 -20.10 -0.12 -1.38 16
22 C -0.09 -1.65 9.73 22.52 0.22 -1.43 16
23 C -0.12 -1.34 10.03 22.23 0.22 -1.12 16
24 C -0.08 -0.74 10.04 22.32 0.22 -0.52 16
25 C -0.12 -1.35 10.03 22.23 0.22 -1.13 16
26 C -0.08 -1.46 9.70 22.52 0.22 -1.24 16
27 O -0.22 -6.62 10.67 -8.37 -0.09 -6.71 16
28 C 0.13 5.78 6.22 86.73 0.54 6.32 16
29 H 0.27 12.72 8.31 -92.70 -0.77 11.95 16
30 H 0.38 18.44 7.41 -74.06 -0.55 17.89 16
31 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16
32 H 0.08 3.38 7.55 -2.39 -0.02 3.37 16
33 H 0.11 2.26 7.48 -2.39 -0.02 2.24 16
34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
35 H 0.18 2.86 7.85 -2.39 -0.02 2.84 16
36 H 0.17 2.46 8.14 -2.39 -0.02 2.44 16
37 H 0.13 2.24 7.94 -2.91 -0.02 2.21 16
38 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16
39 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16
40 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16
41 H 0.13 2.53 7.87 -2.91 -0.02 2.51 16
42 H 0.04 2.09 8.07 -2.39 -0.02 2.07 16
43 H 0.06 2.70 7.66 -2.39 -0.02 2.68 16
Total: -1.00 -73.24 371.53 -0.94 -74.18
By element:
Atomic # 1 Polarization: 25.62 SS G_CDS: 0.51 Total: 26.13 kcal
Atomic # 6 Polarization: 9.06 SS G_CDS: 5.09 Total: 14.15 kcal
Atomic # 7 Polarization: -86.82 SS G_CDS: -6.47 Total: -93.30 kcal
Atomic # 8 Polarization: -62.00 SS G_CDS: -2.09 Total: -64.09 kcal
Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal
Total: -73.24 -0.94 -74.18 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362829941.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.360 kcal
(2) G-P(sol) polarization free energy of solvation -73.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.883 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.178 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.819 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds