Wall clock time and date at job start Sat Apr 11 2020 06:50:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.39671 * 126.06476 * 2 1
4 4 C 1.38428 * 105.35426 * 180.25919 * 3 2 1
5 5 C 1.47134 * 126.88473 * 179.97438 * 4 3 2
6 6 O 1.21647 * 119.99898 * 351.08981 * 5 4 3
7 7 N 1.34777 * 119.99890 * 171.08406 * 5 4 3
8 8 C 1.46501 * 120.00116 * 0.17200 * 7 5 4
9 9 C 1.50703 * 109.46939 * 82.98417 * 8 7 5
10 10 H 1.07995 * 119.99766 * 359.97438 * 9 8 7
11 11 C 1.37872 * 120.00131 * 180.02562 * 9 8 7
12 12 N 1.31520 * 120.00020 * 359.97438 * 11 9 8
13 13 Si 1.86796 * 120.00238 * 179.97438 * 11 9 8
14 14 H 1.48502 * 109.47237 * 59.99761 * 13 11 9
15 15 H 1.48503 * 109.47344 * 179.97438 * 13 11 9
16 16 H 1.48498 * 109.47070 * 299.99712 * 13 11 9
17 17 C 1.40006 * 119.99904 * 180.17777 * 7 5 4
18 18 C 1.38874 * 120.02176 * 171.46277 * 17 7 5
19 19 C 1.38124 * 120.03484 * 179.75927 * 18 17 7
20 20 C 1.38712 * 120.16610 * 0.55927 * 19 18 17
21 21 C 1.38999 * 119.93432 * 359.63025 * 20 19 18
22 22 C 1.38645 * 119.89027 * 0.12590 * 21 20 19
23 23 O 1.36118 * 120.78205 * 180.27257 * 21 20 19
24 24 C 1.43161 * 116.73251 * 342.79946 * 23 21 20
25 25 C 1.53471 * 108.24805 * 46.19032 * 24 23 21
26 26 O 1.36202 * 119.32027 * 179.54318 * 20 19 18
27 27 N 1.36598 * 106.22695 * 0.02562 * 4 3 2
28 28 H 0.97004 * 125.18971 * 179.97438 * 27 4 3
29 29 N 1.28436 * 109.62015 * 359.97438 * 27 4 3
30 30 H 1.08999 * 109.47256 * 269.71668 * 1 2 3
31 31 H 1.09004 * 109.47028 * 29.71633 * 1 2 3
32 32 H 1.08998 * 109.47276 * 149.71159 * 1 2 3
33 33 H 1.07997 * 127.32443 * 0.24616 * 3 2 1
34 34 H 1.08995 * 109.47146 * 202.98781 * 8 7 5
35 35 H 1.09008 * 109.47132 * 322.98498 * 8 7 5
36 36 H 0.96997 * 120.00479 * 180.02562 * 12 11 9
37 37 H 1.08000 * 119.97748 * 0.03923 * 18 17 7
38 38 H 1.07999 * 119.91385 * 180.28951 * 19 18 17
39 39 H 1.07998 * 119.99062 * 179.97438 * 22 21 20
40 40 H 1.08999 * 109.71544 * 165.87835 * 24 23 21
41 41 H 1.09007 * 109.70973 * 286.50391 * 24 23 21
42 42 H 1.09004 * 109.71247 * 59.91598 * 25 24 23
43 43 H 1.09000 * 109.71184 * 180.54954 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3292 1.1290 0.0000
4 6 3.6240 0.6395 -0.0060
5 6 4.8662 1.4280 -0.0090
6 8 4.8214 2.6330 -0.1693
7 7 6.0538 0.8152 0.1660
8 6 6.1081 -0.6365 0.3554
9 6 6.0676 -1.3201 -0.9871
10 1 6.0071 -0.7320 -1.8908
11 6 6.1069 -2.6963 -1.0614
12 7 6.1801 -3.4125 0.0392
13 14 6.0560 -3.5436 -2.7254
14 1 7.2191 -3.1071 -3.5390
15 1 6.1112 -5.0151 -2.5334
16 1 4.7979 -3.1823 -3.4266
17 6 7.2355 1.5659 0.1669
18 6 8.4380 0.9685 0.5217
19 6 9.6048 1.7077 0.5178
20 6 9.5781 3.0506 0.1713
21 6 8.3755 3.6524 -0.1805
22 6 7.2052 2.9090 -0.1815
23 8 8.3303 4.9674 -0.5288
24 6 9.4559 5.7708 -0.1585
25 6 10.7343 5.0073 -0.5301
26 8 10.7374 3.7654 0.1824
27 7 3.5172 -0.7223 -0.0099
28 1 4.2638 -1.3416 -0.0147
29 7 2.2774 -1.0577 -0.0060
30 1 -0.3634 -0.0051 1.0276
31 1 -0.3633 0.8926 -0.5094
32 1 -0.3634 -0.8874 -0.5183
33 1 2.0205 2.1639 0.0037
34 1 7.0315 -0.9015 0.8704
35 1 5.2543 -0.9573 0.9524
36 1 6.2081 -4.3806 -0.0130
37 1 8.4614 -0.0757 0.7963
38 1 10.5396 1.2400 0.7896
39 1 6.2699 3.3750 -0.4541
40 1 9.4243 6.7183 -0.6963
41 1 9.4377 5.9563 0.9155
42 1 10.7493 4.8156 -1.6031
43 1 11.6083 5.5948 -0.2488
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000112287440.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:57
Heat of formation + Delta-G solvation = 27.386753 kcal
Electronic energy + Delta-G solvation = -30204.390817 eV
Core-core repulsion = 26025.521478 eV
Total energy + Delta-G solvation = -4178.869339 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.06846 -41.03599 -39.76378 -37.18474 -36.97948 -35.54103 -33.16162 -32.47373
-30.89390 -30.66537 -29.80018 -28.34755 -27.59083 -27.02974 -24.67803 -24.01559
-22.71834 -22.45190 -20.47078 -20.08325 -19.64142 -18.36064 -17.64499 -17.30443
-16.96556 -16.69108 -16.07343 -15.45521 -15.22942 -15.20178 -14.80625 -14.70419
-14.38660 -14.16623 -14.02256 -13.70078 -13.24772 -13.08689 -12.99322 -12.80622
-12.62050 -12.52273 -12.39501 -12.07543 -11.79192 -11.54202 -11.41095 -11.16249
-11.02466 -10.91799 -10.61126 -10.48942 -10.22548 -10.15039 -9.19848 -9.07501
-8.92826 -8.60670 -8.50303 -8.13465 -7.19293 -6.62570 -4.79964 1.41589
1.69182 2.03571 3.04934 3.07726 3.09452 3.12329 3.16644 3.24479
3.48642 3.60160 3.83589 4.02003 4.20835 4.29568 4.68771 4.78239
4.85015 4.87236 4.95997 5.12564 5.21052 5.41540 5.46839 5.52234
5.61515 5.75576 5.84960 5.88888 5.96833 6.04535 6.11443 6.20353
6.28920 6.34274 6.48972 6.64393 6.67684 6.79529 7.00190 7.11760
7.30272 7.34459 7.41915 7.73246 7.74396 7.86060 8.31694 8.49035
8.70493 8.93112 10.39151
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.010868 B = 0.003993 C = 0.003116
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2575.858396 B = 7009.824072 C = 8984.894196
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 C -0.002 4.002
3 C -0.170 4.170
4 C -0.032 4.032
5 C 0.594 3.406
6 O -0.524 6.524
7 N -0.530 5.530
8 C 0.207 3.793
9 C -0.572 4.572
10 H 0.074 0.926
11 C 0.072 3.928
12 N -0.875 5.875
13 Si 0.905 3.095
14 H -0.269 1.269
15 H -0.279 1.279
16 H -0.269 1.269
17 C 0.179 3.821
18 C -0.142 4.142
19 C -0.091 4.091
20 C 0.010 3.990
21 C 0.068 3.932
22 C -0.167 4.167
23 O -0.305 6.305
24 C 0.021 3.979
25 C 0.022 3.978
26 O -0.312 6.312
27 N -0.342 5.342
28 H 0.471 0.529
29 N -0.276 5.276
30 H 0.067 0.933
31 H 0.071 0.929
32 H 0.067 0.933
33 H 0.156 0.844
34 H 0.067 0.933
35 H 0.042 0.958
36 H 0.278 0.722
37 H 0.146 0.854
38 H 0.134 0.866
39 H 0.190 0.810
40 H 0.116 0.884
41 H 0.073 0.927
42 H 0.073 0.927
43 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.299 10.750 1.299 11.069
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.158 4.158
3 C -0.200 4.200
4 C -0.163 4.163
5 C 0.384 3.616
6 O -0.402 6.402
7 N -0.249 5.249
8 C 0.088 3.912
9 C -0.610 4.610
10 H 0.092 0.908
11 C -0.135 4.135
12 N -0.510 5.510
13 Si 0.731 3.269
14 H -0.194 1.194
15 H -0.204 1.204
16 H -0.194 1.194
17 C 0.083 3.917
18 C -0.162 4.162
19 C -0.110 4.110
20 C -0.035 4.035
21 C 0.022 3.978
22 C -0.187 4.187
23 O -0.220 6.220
24 C -0.055 4.055
25 C -0.054 4.054
26 O -0.227 6.227
27 N -0.075 5.075
28 H 0.338 0.662
29 N -0.113 5.113
30 H 0.086 0.914
31 H 0.089 0.911
32 H 0.086 0.914
33 H 0.174 0.826
34 H 0.085 0.915
35 H 0.059 0.941
36 H 0.088 0.912
37 H 0.163 0.837
38 H 0.152 0.848
39 H 0.206 0.794
40 H 0.134 0.866
41 H 0.092 0.908
42 H 0.091 0.909
43 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges 2.254 9.966 1.301 10.301
hybrid contribution 0.802 0.058 -0.906 1.211
sum 3.056 10.025 0.395 10.488
Atomic orbital electron populations
1.19986 0.87152 1.02628 1.02171 1.21944 0.96942 0.89036 1.07838
1.21859 0.89691 0.99989 1.08442 1.21378 0.95232 0.85617 1.14041
1.17172 0.81961 0.86132 0.76320 1.90423 1.85698 1.13586 1.50464
1.45745 1.03546 1.10380 1.65258 1.20097 1.00362 0.72349 0.98420
1.21497 1.55065 0.91867 0.92571 0.90820 1.25061 0.93313 0.97020
0.98153 1.69888 1.45940 1.07706 1.27486 0.86377 0.79556 0.78346
0.82651 1.19420 1.20434 1.19437 1.17506 0.86145 0.90185 0.97856
1.20840 0.90170 1.01148 1.04056 1.20105 0.98720 0.89809 1.02357
1.18841 0.84124 0.92411 1.08087 1.18710 0.92822 0.83792 1.02447
1.21803 0.99429 0.93056 1.04452 1.86307 1.41947 1.17587 1.76144
1.23556 0.85665 0.94507 1.01745 1.23524 0.99467 0.85103 0.97321
1.86272 1.32127 1.33192 1.71114 1.46090 1.07075 1.06430 1.47945
0.66199 1.73067 0.91137 1.27832 1.19238 0.91384 0.91058 0.91352
0.82600 0.91535 0.94074 0.91213 0.83688 0.84835 0.79375 0.86569
0.90830 0.90896 0.86663
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.77 10.45 36.00 0.38 -0.39 16
2 C 0.00 -0.04 7.22 -82.48 -0.60 -0.64 16
3 C -0.17 -3.12 10.80 -38.98 -0.42 -3.54 16
4 C -0.03 -0.68 6.70 -82.06 -0.55 -1.23 16
5 C 0.59 12.77 7.54 -12.65 -0.10 12.68 16
6 O -0.52 -11.44 13.36 5.24 0.07 -11.37 16
7 N -0.53 -11.26 2.71 -116.02 -0.31 -11.58 16
8 C 0.21 4.59 4.48 -5.19 -0.02 4.57 16
9 C -0.57 -13.66 7.31 -34.44 -0.25 -13.91 16
10 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16
11 C 0.07 1.73 5.08 -17.82 -0.09 1.64 16
12 N -0.88 -21.48 13.29 55.43 0.74 -20.74 16
13 Si 0.91 19.42 29.54 -169.99 -5.02 14.40 16
14 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16
15 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16
16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16
17 C 0.18 3.62 6.48 -83.69 -0.54 3.07 16
18 C -0.14 -2.59 9.29 -39.39 -0.37 -2.96 16
19 C -0.09 -1.50 9.95 -39.45 -0.39 -1.90 16
20 C 0.01 0.17 6.49 -39.12 -0.25 -0.08 16
21 C 0.07 1.22 6.49 -39.15 -0.25 0.96 16
22 C -0.17 -3.33 8.93 -39.23 -0.35 -3.68 16
23 O -0.31 -4.91 10.42 -32.90 -0.34 -5.25 16
24 C 0.02 0.23 7.26 37.40 0.27 0.50 16
25 C 0.02 0.23 7.26 37.40 0.27 0.50 16
26 O -0.31 -4.59 10.42 -33.17 -0.35 -4.94 16
27 N -0.34 -7.44 5.71 33.48 0.19 -7.25 16
28 H 0.47 10.78 3.35 -190.46 -0.64 10.14 16
29 N -0.28 -5.70 12.14 33.63 0.41 -5.30 16
30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16
31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
33 H 0.16 2.47 8.06 -52.49 -0.42 2.05 16
34 H 0.07 1.47 5.64 -51.93 -0.29 1.18 16
35 H 0.04 0.95 5.21 -51.92 -0.27 0.68 16
36 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16
37 H 0.15 2.62 5.88 -52.49 -0.31 2.31 16
38 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16
39 H 0.19 4.01 4.60 -55.86 -0.26 3.75 16
40 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16
41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
43 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16
LS Contribution 354.52 15.07 5.34 5.34
Total: -1.00 -28.04 354.52 -7.66 -35.70
By element:
Atomic # 1 Polarization: 20.50 SS G_CDS: -5.12 Total: 15.39 kcal
Atomic # 6 Polarization: -1.13 SS G_CDS: -3.27 Total: -4.40 kcal
Atomic # 7 Polarization: -45.88 SS G_CDS: 1.02 Total: -44.86 kcal
Atomic # 8 Polarization: -20.95 SS G_CDS: -0.62 Total: -21.57 kcal
Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal
Total LS contribution 5.34 Total: 5.34 kcal
Total: -28.04 -7.66 -35.70 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000112287440.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.089 kcal
(2) G-P(sol) polarization free energy of solvation -28.044 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.045 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.702 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.387 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds