Wall clock time and date at job start Sat Apr 11 2020 06:50:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.39671 * 126.06476 * 2 1
4 4 C 1.38428 * 105.35426 * 180.25919 * 3 2 1
5 5 C 1.47134 * 126.88473 * 179.97438 * 4 3 2
6 6 O 1.21647 * 119.99898 * 351.08981 * 5 4 3
7 7 N 1.34777 * 119.99890 * 171.08406 * 5 4 3
8 8 C 1.46501 * 120.00116 * 0.17200 * 7 5 4
9 9 C 1.50703 * 109.46939 * 82.98417 * 8 7 5
10 10 H 1.07995 * 119.99766 * 359.97438 * 9 8 7
11 11 C 1.37872 * 120.00131 * 180.02562 * 9 8 7
12 12 N 1.31520 * 120.00020 * 359.97438 * 11 9 8
13 13 Si 1.86796 * 120.00238 * 179.97438 * 11 9 8
14 14 H 1.48502 * 109.47237 * 59.99761 * 13 11 9
15 15 H 1.48503 * 109.47344 * 179.97438 * 13 11 9
16 16 H 1.48498 * 109.47070 * 299.99712 * 13 11 9
17 17 C 1.40006 * 119.99904 * 180.17777 * 7 5 4
18 18 C 1.38874 * 120.02176 * 171.46277 * 17 7 5
19 19 C 1.38124 * 120.03484 * 179.75927 * 18 17 7
20 20 C 1.38712 * 120.16610 * 0.55927 * 19 18 17
21 21 C 1.38999 * 119.93432 * 359.63025 * 20 19 18
22 22 C 1.38645 * 119.89027 * 0.12590 * 21 20 19
23 23 O 1.36118 * 120.78205 * 180.27257 * 21 20 19
24 24 C 1.43161 * 116.73251 * 342.79946 * 23 21 20
25 25 C 1.53471 * 108.24805 * 46.19032 * 24 23 21
26 26 O 1.36202 * 119.32027 * 179.54318 * 20 19 18
27 27 N 1.36598 * 106.22695 * 0.02562 * 4 3 2
28 28 H 0.97004 * 125.18971 * 179.97438 * 27 4 3
29 29 N 1.28436 * 109.62015 * 359.97438 * 27 4 3
30 30 H 1.08999 * 109.47256 * 269.71668 * 1 2 3
31 31 H 1.09004 * 109.47028 * 29.71633 * 1 2 3
32 32 H 1.08998 * 109.47276 * 149.71159 * 1 2 3
33 33 H 1.07997 * 127.32443 * 0.24616 * 3 2 1
34 34 H 1.08995 * 109.47146 * 202.98781 * 8 7 5
35 35 H 1.09008 * 109.47132 * 322.98498 * 8 7 5
36 36 H 0.96997 * 120.00479 * 180.02562 * 12 11 9
37 37 H 1.08000 * 119.97748 * 0.03923 * 18 17 7
38 38 H 1.07999 * 119.91385 * 180.28951 * 19 18 17
39 39 H 1.07998 * 119.99062 * 179.97438 * 22 21 20
40 40 H 1.08999 * 109.71544 * 165.87835 * 24 23 21
41 41 H 1.09007 * 109.70973 * 286.50391 * 24 23 21
42 42 H 1.09004 * 109.71247 * 59.91598 * 25 24 23
43 43 H 1.09000 * 109.71184 * 180.54954 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3292 1.1290 0.0000
4 6 3.6240 0.6395 -0.0060
5 6 4.8662 1.4280 -0.0090
6 8 4.8214 2.6330 -0.1693
7 7 6.0538 0.8152 0.1660
8 6 6.1081 -0.6365 0.3554
9 6 6.0676 -1.3201 -0.9871
10 1 6.0071 -0.7320 -1.8908
11 6 6.1069 -2.6963 -1.0614
12 7 6.1801 -3.4125 0.0392
13 14 6.0560 -3.5436 -2.7254
14 1 7.2191 -3.1071 -3.5390
15 1 6.1112 -5.0151 -2.5334
16 1 4.7979 -3.1823 -3.4266
17 6 7.2355 1.5659 0.1669
18 6 8.4380 0.9685 0.5217
19 6 9.6048 1.7077 0.5178
20 6 9.5781 3.0506 0.1713
21 6 8.3755 3.6524 -0.1805
22 6 7.2052 2.9090 -0.1815
23 8 8.3303 4.9674 -0.5288
24 6 9.4559 5.7708 -0.1585
25 6 10.7343 5.0073 -0.5301
26 8 10.7374 3.7654 0.1824
27 7 3.5172 -0.7223 -0.0099
28 1 4.2638 -1.3416 -0.0147
29 7 2.2774 -1.0577 -0.0060
30 1 -0.3634 -0.0051 1.0276
31 1 -0.3633 0.8926 -0.5094
32 1 -0.3634 -0.8874 -0.5183
33 1 2.0205 2.1639 0.0037
34 1 7.0315 -0.9015 0.8704
35 1 5.2543 -0.9573 0.9524
36 1 6.2081 -4.3806 -0.0130
37 1 8.4614 -0.0757 0.7963
38 1 10.5396 1.2400 0.7896
39 1 6.2699 3.3750 -0.4541
40 1 9.4243 6.7183 -0.6963
41 1 9.4377 5.9563 0.9155
42 1 10.7493 4.8156 -1.6031
43 1 11.6083 5.5948 -0.2488
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000112287440.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:56
Heat of formation + Delta-G solvation = 10.845387 kcal
Electronic energy + Delta-G solvation = -30205.108105 eV
Core-core repulsion = 26025.521478 eV
Total energy + Delta-G solvation = -4179.586626 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-43.59909 -42.29992 -41.25506 -38.63222 -38.16681 -37.13555 -34.90715 -33.87170
-32.27102 -31.93057 -31.21492 -29.81312 -29.04895 -28.34220 -25.92186 -25.70019
-24.17596 -23.87429 -21.86108 -21.48793 -21.07565 -19.61474 -19.12554 -18.91140
-18.50142 -18.10819 -17.44767 -16.93122 -16.84717 -16.48435 -16.33709 -15.89478
-15.86839 -15.50697 -15.30349 -15.00599 -14.70427 -14.56460 -14.48844 -14.21410
-13.86220 -13.72067 -13.61782 -13.37570 -13.27493 -13.08423 -12.95562 -12.73598
-12.51650 -12.34001 -11.97871 -11.92575 -11.73383 -11.56637 -10.89692 -10.72145
-10.51689 -10.16264 -9.96401 -9.53139 -8.69505 -8.42064 -6.69304 -0.08889
0.28558 0.53785 1.33512 1.36317 1.42684 1.62584 1.65100 1.99978
2.09604 2.19856 2.28067 2.37716 2.74782 2.82705 3.26395 3.38276
3.73380 3.78644 3.97506 4.08324 4.10824 4.16847 4.19663 4.27351
4.41521 4.46666 4.51703 4.61804 4.62344 4.79250 4.84183 4.94982
4.97371 5.06261 5.10940 5.16024 5.23618 5.36359 5.43232 5.59356
5.67912 5.82452 5.92446 6.10758 6.24118 6.45082 6.46185 6.83873
7.04593 7.18431 8.54127
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.010868 B = 0.003993 C = 0.003116
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2575.858396 B = 7009.824072 C = 8984.894196
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 C 0.007 3.993
3 C -0.164 4.164
4 C -0.056 4.056
5 C 0.586 3.414
6 O -0.535 6.535
7 N -0.532 5.532
8 C 0.220 3.780
9 C -0.574 4.574
10 H 0.055 0.945
11 C 0.043 3.957
12 N -0.894 5.894
13 Si 0.951 3.049
14 H -0.269 1.269
15 H -0.269 1.269
16 H -0.277 1.277
17 C 0.152 3.848
18 C -0.148 4.148
19 C -0.086 4.086
20 C 0.018 3.982
21 C 0.066 3.934
22 C -0.185 4.185
23 O -0.324 6.324
24 C 0.012 3.988
25 C 0.015 3.985
26 O -0.317 6.317
27 N -0.363 5.363
28 H 0.464 0.536
29 N -0.304 5.304
30 H 0.088 0.912
31 H 0.098 0.902
32 H 0.073 0.927
33 H 0.181 0.819
34 H 0.064 0.936
35 H 0.034 0.966
36 H 0.281 0.719
37 H 0.143 0.857
38 H 0.161 0.839
39 H 0.172 0.828
40 H 0.155 0.845
41 H 0.080 0.920
42 H 0.076 0.924
43 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.897 12.158 1.041 12.542
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.149 4.149
3 C -0.194 4.194
4 C -0.186 4.186
5 C 0.377 3.623
6 O -0.415 6.415
7 N -0.251 5.251
8 C 0.099 3.901
9 C -0.612 4.612
10 H 0.073 0.927
11 C -0.162 4.162
12 N -0.529 5.529
13 Si 0.775 3.225
14 H -0.194 1.194
15 H -0.194 1.194
16 H -0.202 1.202
17 C 0.057 3.943
18 C -0.168 4.168
19 C -0.104 4.104
20 C -0.028 4.028
21 C 0.021 3.979
22 C -0.205 4.205
23 O -0.239 6.239
24 C -0.063 4.063
25 C -0.060 4.060
26 O -0.233 6.233
27 N -0.094 5.094
28 H 0.328 0.672
29 N -0.140 5.140
30 H 0.106 0.894
31 H 0.116 0.884
32 H 0.092 0.908
33 H 0.198 0.802
34 H 0.082 0.918
35 H 0.051 0.949
36 H 0.091 0.909
37 H 0.161 0.839
38 H 0.179 0.821
39 H 0.189 0.811
40 H 0.173 0.827
41 H 0.099 0.901
42 H 0.094 0.906
43 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges 2.874 11.398 1.046 11.801
hybrid contribution 0.674 -0.175 -0.823 1.078
sum 3.548 11.223 0.223 11.773
Atomic orbital electron populations
1.20216 0.83336 1.04284 1.03982 1.22792 0.99073 0.87848 1.05147
1.22282 0.88725 1.01400 1.06988 1.21629 0.95987 0.85634 1.15328
1.17375 0.82348 0.86232 0.76336 1.90418 1.85969 1.13823 1.51243
1.45697 1.04094 1.09984 1.65372 1.19857 0.99735 0.72967 0.97493
1.21450 1.55165 0.92067 0.92495 0.92683 1.25548 0.93030 0.97302
1.00366 1.69932 1.46470 1.07960 1.28561 0.85680 0.78949 0.78054
0.79782 1.19361 1.19354 1.20229 1.17756 0.86355 0.90606 0.99564
1.20877 0.90271 1.01223 1.04423 1.20381 0.99013 0.89883 1.01168
1.18892 0.84566 0.92650 1.06683 1.18696 0.92558 0.84766 1.01915
1.21649 0.99767 0.93248 1.05872 1.86278 1.44641 1.16863 1.76121
1.24022 0.84178 0.95127 1.02938 1.23949 1.01037 0.83655 0.97312
1.86267 1.30727 1.34700 1.71569 1.45980 1.07308 1.06491 1.49633
0.67195 1.73063 0.91070 1.29349 1.20567 0.89362 0.88356 0.90764
0.80161 0.91780 0.94852 0.90935 0.83935 0.82114 0.81127 0.82732
0.90146 0.90597 0.82283
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.36 10.45 71.23 0.74 -0.61 16
2 C 0.01 0.26 7.22 43.05 0.31 0.57 16
3 C -0.16 -5.95 10.80 22.66 0.24 -5.71 16
4 C -0.06 -2.42 6.70 40.78 0.27 -2.14 16
5 C 0.59 26.36 7.54 86.58 0.65 27.01 16
6 O -0.54 -24.37 13.36 -4.18 -0.06 -24.43 16
7 N -0.53 -23.75 2.71 -639.22 -1.73 -25.48 16
8 C 0.22 10.19 4.48 85.63 0.38 10.57 16
9 C -0.57 -28.40 7.31 25.60 0.19 -28.21 16
10 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16
11 C 0.04 2.11 5.08 84.65 0.43 2.54 16
12 N -0.89 -44.56 13.29 21.45 0.28 -44.28 16
13 Si 0.95 40.16 29.54 68.60 2.03 42.19 16
14 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16
15 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16
16 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16
17 C 0.15 6.40 6.48 38.12 0.25 6.65 16
18 C -0.15 -5.52 9.29 22.40 0.21 -5.31 16
19 C -0.09 -2.77 9.95 22.36 0.22 -2.54 16
20 C 0.02 0.58 6.49 22.57 0.15 0.72 16
21 C 0.07 2.38 6.49 22.55 0.15 2.53 16
22 C -0.19 -7.63 8.93 22.50 0.20 -7.43 16
23 O -0.32 -10.11 10.42 -82.66 -0.86 -10.97 16
24 C 0.01 0.22 7.26 72.14 0.52 0.75 16
25 C 0.02 0.27 7.26 72.14 0.52 0.79 16
26 O -0.32 -8.52 10.42 -83.63 -0.87 -9.39 16
27 N -0.36 -16.31 5.71 -48.00 -0.27 -16.58 16
28 H 0.46 22.13 3.35 -220.00 -0.74 21.40 16
29 N -0.30 -12.71 12.14 -47.50 -0.58 -13.28 16
30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16
31 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16
32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
33 H 0.18 5.47 8.06 -2.91 -0.02 5.44 16
34 H 0.06 2.96 5.64 -2.39 -0.01 2.95 16
35 H 0.03 1.63 5.21 -2.38 -0.01 1.62 16
36 H 0.28 13.29 8.31 -92.71 -0.77 12.52 16
37 H 0.14 5.31 5.88 -2.91 -0.02 5.29 16
38 H 0.16 4.23 8.06 -2.91 -0.02 4.20 16
39 H 0.17 7.64 4.60 -56.38 -0.26 7.38 16
40 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16
41 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16
42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
43 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16
Total: -1.00 -63.01 354.52 3.49 -59.52
By element:
Atomic # 1 Polarization: 42.44 SS G_CDS: 0.11 Total: 42.55 kcal
Atomic # 6 Polarization: -5.28 SS G_CDS: 5.44 Total: 0.16 kcal
Atomic # 7 Polarization: -97.33 SS G_CDS: -2.29 Total: -99.62 kcal
Atomic # 8 Polarization: -43.00 SS G_CDS: -1.79 Total: -44.79 kcal
Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal
Total: -63.01 3.49 -59.52 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000112287440.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.364 kcal
(2) G-P(sol) polarization free energy of solvation -63.012 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.351 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.519 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.845 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds