Wall clock time and date at job start Sat Apr 11 2020 06:49:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86802 * 119.99970 * 2 1
4 4 H 1.48497 * 109.47147 * 239.99380 * 3 2 1
5 5 H 1.48499 * 109.46854 * 359.97438 * 3 2 1
6 6 H 1.48507 * 109.46876 * 119.99460 * 3 2 1
7 7 C 1.38813 * 120.00049 * 179.97438 * 2 1 3
8 8 H 1.07994 * 119.99966 * 179.97438 * 7 2 1
9 9 N 1.36937 * 119.99894 * 0.02562 * 7 2 1
10 10 C 1.46499 * 120.00001 * 179.97438 * 9 7 2
11 11 H 1.09006 * 109.50078 * 34.92813 * 10 9 7
12 12 C 1.53043 * 109.50110 * 154.99483 * 10 9 7
13 13 C 1.53036 * 109.53798 * 181.34714 * 12 10 9
14 14 C 1.53185 * 109.34154 * 298.62041 * 13 12 10
15 15 N 1.46996 * 108.74175 * 54.62163 * 14 13 12
16 16 C 1.34777 * 120.61119 * 126.38683 * 15 14 13
17 17 O 1.21556 * 119.99158 * 176.01048 * 16 15 14
18 18 C 1.47835 * 120.00368 * 356.00994 * 16 15 14
19 19 C 1.39558 * 120.55770 * 55.24492 * 18 16 15
20 20 N 1.31668 * 120.56589 * 179.97438 * 19 18 16
21 21 C 1.31963 * 121.87688 * 359.97438 * 20 19 18
22 22 C 1.38302 * 121.08018 * 359.97438 * 21 20 19
23 23 C 1.38396 * 119.30878 * 359.77819 * 22 21 20
24 24 C 1.50705 * 120.86011 * 180.25120 * 23 22 21
25 25 F 1.39898 * 109.46853 * 0.21820 * 24 23 22
26 26 F 1.39893 * 109.47188 * 120.22290 * 24 23 22
27 27 F 1.39898 * 109.46830 * 240.22711 * 24 23 22
28 28 C 1.46922 * 118.75381 * 306.41354 * 15 14 13
29 29 H 0.97001 * 119.99906 * 0.02562 * 1 2 3
30 30 H 0.96996 * 120.00213 * 359.97438 * 9 7 2
31 31 H 1.09004 * 109.45538 * 61.32500 * 12 10 9
32 32 H 1.08998 * 109.45810 * 301.37100 * 12 10 9
33 33 H 1.09006 * 109.49751 * 58.59272 * 13 12 10
34 34 H 1.09008 * 109.49251 * 178.64962 * 13 12 10
35 35 H 1.09000 * 109.58848 * 174.44522 * 14 13 12
36 36 H 1.09003 * 109.58703 * 294.86132 * 14 13 12
37 37 H 1.08003 * 119.72198 * 359.97438 * 19 18 16
38 38 H 1.07999 * 119.45788 * 180.02562 * 21 20 19
39 39 H 1.08006 * 120.34878 * 179.97438 * 22 21 20
40 40 H 1.08999 * 109.58549 * 293.81599 * 28 15 14
41 41 H 1.08997 * 109.70544 * 173.46342 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1040 1.6964 -1.2124
5 1 1.2851 2.7464 -0.0006
6 1 3.1039 1.6964 1.2126
7 6 2.0103 -1.2022 0.0005
8 1 3.0902 -1.2021 0.0001
9 7 1.3256 -2.3881 0.0005
10 6 2.0581 -3.6568 0.0005
11 1 2.9696 -3.5507 0.5888
12 6 1.1812 -4.7529 0.6103
13 6 1.9577 -6.0713 0.6415
14 6 2.3183 -6.4817 -0.7896
15 7 3.0373 -5.3723 -1.4322
16 6 4.2406 -5.5744 -2.0046
17 8 4.7923 -4.6668 -2.5958
18 6 4.8894 -6.8996 -1.9135
19 6 4.2234 -8.0469 -2.3468
20 7 4.8013 -9.2273 -2.2662
21 6 6.0189 -9.3753 -1.7793
22 6 6.7453 -8.2875 -1.3300
23 6 6.1848 -7.0239 -1.3978
24 6 6.9473 -5.8137 -0.9233
25 9 8.2060 -6.2085 -0.4577
26 9 7.1032 -4.9152 -1.9842
27 9 6.2404 -5.1939 0.1127
28 6 2.4198 -4.0391 -1.4381
29 1 -0.4850 0.8401 -0.0004
30 1 0.3556 -2.3881 0.0005
31 1 0.2815 -4.8755 0.0074
32 1 0.9021 -4.4717 1.6258
33 1 2.8701 -5.9424 1.2239
34 1 1.3412 -6.8458 1.0979
35 1 2.9548 -7.3662 -0.7667
36 1 1.4076 -6.6989 -1.3478
37 1 3.2255 -7.9660 -2.7518
38 1 6.4556 -10.3619 -1.7317
39 1 7.7408 -8.4223 -0.9333
40 1 1.5174 -4.0571 -2.0493
41 1 3.1217 -3.3108 -1.8443
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001000315842.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:32
Heat of formation + Delta-G solvation = -123.659022 kcal
Electronic energy + Delta-G solvation = -31344.523526 eV
Core-core repulsion = 26617.247611 eV
Total energy + Delta-G solvation = -4727.275915 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.125 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-50.27000 -47.84803 -47.61683 -41.23009 -39.52751 -37.41436 -34.61751 -33.83607
-32.66924 -31.88673 -31.15556 -28.39242 -27.17763 -25.87488 -24.20662 -24.02545
-22.96026 -21.95514 -20.70625 -19.46420 -18.79900 -18.64211 -18.54383 -17.60488
-17.11395 -16.76180 -16.06431 -15.83330 -15.26653 -15.07324 -14.61164 -14.52572
-14.42543 -14.37122 -14.16833 -14.10245 -14.08546 -13.80490 -13.72434 -13.53246
-13.45435 -12.86431 -12.73192 -12.50118 -12.46966 -12.33538 -11.42220 -11.11981
-10.84799 -10.80088 -10.69370 -10.63567 -10.51427 -10.25056 -9.91861 -9.87491
-9.72166 -9.54478 -9.11305 -8.48064 -7.03304 -5.80338 -3.10468 0.11066
0.34261 2.30584 2.46294 2.85097 3.10114 3.41742 3.45827 3.49484
3.51712 3.66082 3.77805 4.11100 4.21857 4.30874 4.40677 4.56421
4.66876 4.78431 4.97702 5.01508 5.02632 5.16563 5.31258 5.43036
5.45807 5.52965 5.74464 5.82910 5.86727 5.95709 6.10510 6.14503
6.28662 6.40705 6.59430 6.76529 6.93530 7.20636 7.40560 7.70363
8.06147 8.37711 9.49771 10.02555 10.37996 11.41712
Molecular weight = 343.12amu
Principal moments of inertia in cm(-1)
A = 0.014730 B = 0.003667 C = 0.003188
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1900.420686 B = 7634.547462 C = 8780.524000
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C -0.008 4.008
3 Si 0.907 3.093
4 H -0.284 1.284
5 H -0.291 1.291
6 H -0.285 1.285
7 C -0.245 4.245
8 H 0.071 0.929
9 N -0.716 5.716
10 C 0.168 3.832
11 H 0.052 0.948
12 C -0.126 4.126
13 C -0.130 4.130
14 C 0.099 3.901
15 N -0.590 5.590
16 C 0.543 3.457
17 O -0.509 6.509
18 C -0.121 4.121
19 C 0.133 3.867
20 N -0.460 5.460
21 C 0.115 3.885
22 C -0.129 4.129
23 C -0.098 4.098
24 C 0.504 3.496
25 F -0.177 7.177
26 F -0.149 7.149
27 F -0.166 7.166
28 C 0.093 3.907
29 H 0.256 0.744
30 H 0.386 0.614
31 H 0.063 0.937
32 H 0.069 0.931
33 H 0.066 0.934
34 H 0.074 0.926
35 H 0.077 0.923
36 H 0.076 0.924
37 H 0.175 0.825
38 H 0.174 0.826
39 H 0.158 0.842
40 H 0.067 0.933
41 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.433 -23.113 -1.407 25.398
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.580 5.580
2 C -0.205 4.205
3 Si 0.737 3.263
4 H -0.211 1.211
5 H -0.216 1.216
6 H -0.212 1.212
7 C -0.376 4.376
8 H 0.089 0.911
9 N -0.357 5.357
10 C 0.057 3.943
11 H 0.070 0.930
12 C -0.164 4.164
13 C -0.168 4.168
14 C -0.024 4.024
15 N -0.323 5.323
16 C 0.327 3.673
17 O -0.385 6.385
18 C -0.126 4.126
19 C -0.025 4.025
20 N -0.168 5.168
21 C -0.041 4.041
22 C -0.149 4.149
23 C -0.108 4.108
24 C 0.449 3.551
25 F -0.159 7.159
26 F -0.130 7.130
27 F -0.148 7.148
28 C -0.031 4.031
29 H 0.066 0.934
30 H 0.220 0.780
31 H 0.081 0.919
32 H 0.088 0.912
33 H 0.085 0.915
34 H 0.092 0.908
35 H 0.095 0.905
36 H 0.094 0.906
37 H 0.192 0.808
38 H 0.191 0.809
39 H 0.175 0.825
40 H 0.085 0.915
41 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 10.373 -23.112 -1.984 25.411
hybrid contribution 0.733 1.813 0.350 1.987
sum 11.106 -21.299 -1.634 24.076
Atomic orbital electron populations
1.69649 1.05128 1.25940 1.57267 1.24737 0.95499 0.97744 1.02481
0.86273 0.78588 0.83345 0.78059 1.21057 1.21643 1.21156 1.19228
0.91099 0.83951 1.43345 0.91070 1.42358 1.05801 0.99512 1.88014
1.20492 0.95071 0.86553 0.92207 0.92991 1.21831 0.98662 0.93926
1.02023 1.21876 1.01086 0.98412 0.95467 1.21993 0.96958 0.88932
0.94535 1.48243 1.17855 1.11732 1.54466 1.18045 0.81953 0.86645
0.80641 1.90916 1.63302 1.42791 1.41478 1.20981 0.94193 0.97114
1.00326 1.23125 0.99690 0.85678 0.94020 1.67758 1.10977 1.25671
1.12391 1.23041 0.89629 0.99232 0.92226 1.22065 1.02311 0.91250
0.99240 1.20505 0.94589 0.94280 1.01425 1.18090 0.77234 0.83417
0.76314 1.93170 1.42760 1.90747 1.89187 1.93364 1.95348 1.68887
1.55419 1.93284 1.78175 1.84042 1.59259 1.22936 0.97947 0.80720
1.01514 0.93375 0.78003 0.91865 0.91218 0.91532 0.90768 0.90518
0.90556 0.80843 0.80919 0.82486 0.91498 0.88860
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16
2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16
3 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16
4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16
5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16
7 C -0.25 -6.81 9.93 -15.06 -0.15 -6.96 16
8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16
9 N -0.72 -17.54 5.13 -53.31 -0.27 -17.82 16
10 C 0.17 3.27 2.92 -67.81 -0.20 3.07 16
11 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16
12 C -0.13 -1.90 5.35 -26.69 -0.14 -2.05 16
13 C -0.13 -1.50 6.08 -26.62 -0.16 -1.66 16
14 C 0.10 1.07 5.60 -3.68 -0.02 1.05 16
15 N -0.59 -8.72 2.97 -173.83 -0.52 -9.23 16
16 C 0.54 8.51 6.13 -12.33 -0.08 8.44 16
17 O -0.51 -10.01 13.95 5.32 0.07 -9.94 16
18 C -0.12 -1.47 4.83 -104.82 -0.51 -1.97 16
19 C 0.13 1.27 8.65 -17.13 -0.15 1.13 16
20 N -0.46 -4.09 10.35 -12.91 -0.13 -4.22 16
21 C 0.12 0.79 11.17 -17.47 -0.20 0.59 16
22 C -0.13 -1.00 9.49 -39.50 -0.37 -1.37 16
23 C -0.10 -1.12 5.43 -103.91 -0.56 -1.68 16
24 C 0.50 6.81 2.89 36.01 0.10 6.91 16
25 F -0.18 -2.04 16.08 2.25 0.04 -2.00 16
26 F -0.15 -2.43 14.80 2.25 0.03 -2.39 16
27 F -0.17 -2.56 16.62 2.25 0.04 -2.52 16
28 C 0.09 1.70 6.00 -3.71 -0.02 1.68 16
29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
30 H 0.39 9.90 7.80 -40.82 -0.32 9.58 16
31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
34 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16
35 H 0.08 0.70 4.81 -51.93 -0.25 0.45 16
36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
37 H 0.17 1.34 7.47 -52.48 -0.39 0.95 16
38 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16
39 H 0.16 0.82 7.26 -52.48 -0.38 0.44 16
40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
41 H 0.09 2.02 7.03 -51.93 -0.37 1.66 16
LS Contribution 349.31 15.07 5.26 5.26
Total: -1.00 -33.26 349.31 -6.96 -40.22
By element:
Atomic # 1 Polarization: 9.88 SS G_CDS: -4.63 Total: 5.25 kcal
Atomic # 6 Polarization: 9.38 SS G_CDS: -2.55 Total: 6.83 kcal
Atomic # 7 Polarization: -58.18 SS G_CDS: -0.20 Total: -58.38 kcal
Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal
Atomic # 9 Polarization: -7.02 SS G_CDS: 0.11 Total: -6.91 kcal
Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -33.26 -6.96 -40.22 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001000315842.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -83.437 kcal
(2) G-P(sol) polarization free energy of solvation -33.261 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.699 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.659 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds