Wall clock time and date at job start Sat Apr 11 2020 06:49:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86802 * 119.99970 * 2 1
4 4 H 1.48497 * 109.47147 * 239.99380 * 3 2 1
5 5 H 1.48499 * 109.46854 * 359.97438 * 3 2 1
6 6 H 1.48507 * 109.46876 * 119.99460 * 3 2 1
7 7 C 1.38813 * 120.00049 * 179.97438 * 2 1 3
8 8 H 1.07994 * 119.99966 * 179.97438 * 7 2 1
9 9 N 1.36937 * 119.99894 * 0.02562 * 7 2 1
10 10 C 1.46499 * 120.00001 * 179.97438 * 9 7 2
11 11 H 1.09006 * 109.50078 * 34.92813 * 10 9 7
12 12 C 1.53043 * 109.50110 * 154.99483 * 10 9 7
13 13 C 1.53036 * 109.53798 * 181.34714 * 12 10 9
14 14 C 1.53185 * 109.34154 * 298.62041 * 13 12 10
15 15 N 1.46996 * 108.74175 * 54.62163 * 14 13 12
16 16 C 1.34777 * 120.61119 * 126.38683 * 15 14 13
17 17 O 1.21556 * 119.99158 * 176.01048 * 16 15 14
18 18 C 1.47835 * 120.00368 * 356.00994 * 16 15 14
19 19 C 1.39558 * 120.55770 * 55.24492 * 18 16 15
20 20 N 1.31668 * 120.56589 * 179.97438 * 19 18 16
21 21 C 1.31963 * 121.87688 * 359.97438 * 20 19 18
22 22 C 1.38302 * 121.08018 * 359.97438 * 21 20 19
23 23 C 1.38396 * 119.30878 * 359.77819 * 22 21 20
24 24 C 1.50705 * 120.86011 * 180.25120 * 23 22 21
25 25 F 1.39898 * 109.46853 * 0.21820 * 24 23 22
26 26 F 1.39893 * 109.47188 * 120.22290 * 24 23 22
27 27 F 1.39898 * 109.46830 * 240.22711 * 24 23 22
28 28 C 1.46922 * 118.75381 * 306.41354 * 15 14 13
29 29 H 0.97001 * 119.99906 * 0.02562 * 1 2 3
30 30 H 0.96996 * 120.00213 * 359.97438 * 9 7 2
31 31 H 1.09004 * 109.45538 * 61.32500 * 12 10 9
32 32 H 1.08998 * 109.45810 * 301.37100 * 12 10 9
33 33 H 1.09006 * 109.49751 * 58.59272 * 13 12 10
34 34 H 1.09008 * 109.49251 * 178.64962 * 13 12 10
35 35 H 1.09000 * 109.58848 * 174.44522 * 14 13 12
36 36 H 1.09003 * 109.58703 * 294.86132 * 14 13 12
37 37 H 1.08003 * 119.72198 * 359.97438 * 19 18 16
38 38 H 1.07999 * 119.45788 * 180.02562 * 21 20 19
39 39 H 1.08006 * 120.34878 * 179.97438 * 22 21 20
40 40 H 1.08999 * 109.58549 * 293.81599 * 28 15 14
41 41 H 1.08997 * 109.70544 * 173.46342 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1040 1.6964 -1.2124
5 1 1.2851 2.7464 -0.0006
6 1 3.1039 1.6964 1.2126
7 6 2.0103 -1.2022 0.0005
8 1 3.0902 -1.2021 0.0001
9 7 1.3256 -2.3881 0.0005
10 6 2.0581 -3.6568 0.0005
11 1 2.9696 -3.5507 0.5888
12 6 1.1812 -4.7529 0.6103
13 6 1.9577 -6.0713 0.6415
14 6 2.3183 -6.4817 -0.7896
15 7 3.0373 -5.3723 -1.4322
16 6 4.2406 -5.5744 -2.0046
17 8 4.7923 -4.6668 -2.5958
18 6 4.8894 -6.8996 -1.9135
19 6 4.2234 -8.0469 -2.3468
20 7 4.8013 -9.2273 -2.2662
21 6 6.0189 -9.3753 -1.7793
22 6 6.7453 -8.2875 -1.3300
23 6 6.1848 -7.0239 -1.3978
24 6 6.9473 -5.8137 -0.9233
25 9 8.2060 -6.2085 -0.4577
26 9 7.1032 -4.9152 -1.9842
27 9 6.2404 -5.1939 0.1127
28 6 2.4198 -4.0391 -1.4381
29 1 -0.4850 0.8401 -0.0004
30 1 0.3556 -2.3881 0.0005
31 1 0.2815 -4.8755 0.0074
32 1 0.9021 -4.4717 1.6258
33 1 2.8701 -5.9424 1.2239
34 1 1.3412 -6.8458 1.0979
35 1 2.9548 -7.3662 -0.7667
36 1 1.4076 -6.6989 -1.3478
37 1 3.2255 -7.9660 -2.7518
38 1 6.4556 -10.3619 -1.7317
39 1 7.7408 -8.4223 -0.9333
40 1 1.5174 -4.0571 -2.0493
41 1 3.1217 -3.3108 -1.8443
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001000315842.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:32
Heat of formation + Delta-G solvation = -146.396501 kcal
Electronic energy + Delta-G solvation = -31345.509497 eV
Core-core repulsion = 26617.247611 eV
Total energy + Delta-G solvation = -4728.261886 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.125 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-51.34734 -48.89663 -48.77536 -42.12327 -40.57965 -38.75805 -36.30797 -34.62541
-34.13512 -32.85909 -32.69212 -30.01743 -28.15666 -26.94807 -25.92999 -25.07659
-23.90512 -23.27754 -21.99844 -20.67451 -19.79766 -19.65398 -19.60370 -19.14850
-18.68330 -17.61139 -17.21835 -16.86084 -16.56078 -16.13403 -15.91439 -15.71420
-15.64266 -15.47869 -15.41721 -15.23434 -15.15061 -15.02563 -14.95308 -14.94965
-14.72462 -14.08550 -13.96611 -13.72906 -13.55249 -13.38628 -13.11864 -12.91036
-12.54133 -12.28121 -12.08719 -11.95135 -11.78707 -11.51407 -11.43415 -11.38054
-11.11264 -10.76465 -10.35419 -9.85333 -9.05623 -8.00954 -5.30115 -0.67691
-0.32567 1.30733 1.35573 1.42572 1.45111 1.51252 1.77986 2.34572
2.43551 2.51328 2.74330 3.04671 3.15904 3.31563 3.32606 3.53889
3.66139 3.69416 3.92425 3.99256 4.05636 4.14260 4.27335 4.32214
4.34514 4.46671 4.53482 4.66013 4.70678 4.82054 4.84366 4.98079
5.09775 5.27177 5.33267 5.38707 5.41307 5.50403 6.21371 6.22719
6.55720 6.87602 7.28946 8.00212 8.26370 9.21298
Molecular weight = 343.12amu
Principal moments of inertia in cm(-1)
A = 0.014730 B = 0.003667 C = 0.003188
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1900.420686 B = 7634.547462 C = 8780.524000
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.961 5.961
2 C -0.063 4.063
3 Si 0.965 3.035
4 H -0.284 1.284
5 H -0.287 1.287
6 H -0.279 1.279
7 C -0.249 4.249
8 H 0.062 0.938
9 N -0.727 5.727
10 C 0.167 3.833
11 H 0.026 0.974
12 C -0.117 4.117
13 C -0.121 4.121
14 C 0.095 3.905
15 N -0.589 5.589
16 C 0.540 3.460
17 O -0.563 6.563
18 C -0.143 4.143
19 C 0.142 3.858
20 N -0.466 5.466
21 C 0.136 3.864
22 C -0.116 4.116
23 C -0.111 4.111
24 C 0.496 3.504
25 F -0.165 7.165
26 F -0.172 7.172
27 F -0.184 7.184
28 C 0.109 3.891
29 H 0.254 0.746
30 H 0.379 0.621
31 H 0.074 0.926
32 H 0.061 0.939
33 H 0.056 0.944
34 H 0.115 0.885
35 H 0.103 0.897
36 H 0.103 0.897
37 H 0.192 0.808
38 H 0.220 0.780
39 H 0.186 0.814
40 H 0.070 0.930
41 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.995 -27.154 -1.139 29.317
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.611 5.611
2 C -0.256 4.256
3 Si 0.794 3.206
4 H -0.211 1.211
5 H -0.213 1.213
6 H -0.205 1.205
7 C -0.380 4.380
8 H 0.080 0.920
9 N -0.367 5.367
10 C 0.057 3.943
11 H 0.044 0.956
12 C -0.155 4.155
13 C -0.160 4.160
14 C -0.026 4.026
15 N -0.321 5.321
16 C 0.327 3.673
17 O -0.442 6.442
18 C -0.149 4.149
19 C -0.015 4.015
20 N -0.173 5.173
21 C -0.021 4.021
22 C -0.135 4.135
23 C -0.121 4.121
24 C 0.442 3.558
25 F -0.147 7.147
26 F -0.154 7.154
27 F -0.166 7.166
28 C -0.016 4.016
29 H 0.063 0.937
30 H 0.212 0.788
31 H 0.093 0.907
32 H 0.080 0.920
33 H 0.075 0.925
34 H 0.133 0.867
35 H 0.121 0.879
36 H 0.121 0.879
37 H 0.208 0.792
38 H 0.237 0.763
39 H 0.203 0.797
40 H 0.088 0.912
41 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 10.943 -27.222 -1.700 29.388
hybrid contribution 0.687 2.924 0.284 3.017
sum 11.630 -24.298 -1.416 26.975
Atomic orbital electron populations
1.69770 1.06211 1.26306 1.58822 1.25432 0.96358 1.00617 1.03185
0.85354 0.77466 0.79808 0.78014 1.21066 1.21311 1.20482 1.19446
0.90931 0.85569 1.42097 0.92011 1.42464 1.05551 1.00448 1.88275
1.20639 0.94607 0.86268 0.92763 0.95560 1.21736 0.98560 0.94107
1.01146 1.21866 1.00741 0.97196 0.96180 1.22351 0.98155 0.88142
0.93956 1.48230 1.18075 1.11182 1.54593 1.18628 0.81564 0.87711
0.79431 1.90879 1.64498 1.45066 1.43767 1.20661 0.94915 0.95683
1.03637 1.23323 1.00210 0.84901 0.93032 1.67908 1.11979 1.24706
1.12719 1.23836 0.88448 1.00650 0.89142 1.22446 1.03369 0.89627
0.98089 1.20511 0.94401 0.94537 1.02677 1.18487 0.77919 0.83934
0.75477 1.93179 1.42021 1.90478 1.88989 1.93311 1.95523 1.70062
1.56475 1.93240 1.78667 1.84644 1.60036 1.22313 0.96969 0.82243
1.00104 0.93721 0.78792 0.90745 0.91979 0.92549 0.86717 0.87882
0.87864 0.79162 0.76347 0.79686 0.91207 0.93281
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -58.84 13.06 21.65 0.28 -58.56 16
2 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16
3 Si 0.96 47.88 29.55 68.60 2.03 49.91 16
4 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16
5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16
6 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16
7 C -0.25 -14.40 9.93 84.03 0.83 -13.56 16
8 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16
9 N -0.73 -37.12 5.13 -322.56 -1.65 -38.78 16
10 C 0.17 6.76 2.92 45.07 0.13 6.89 16
11 H 0.03 1.19 8.08 -2.38 -0.02 1.17 16
12 C -0.12 -3.45 5.35 30.62 0.16 -3.29 16
13 C -0.12 -2.49 6.08 30.67 0.19 -2.31 16
14 C 0.09 1.80 5.60 86.35 0.48 2.29 16
15 N -0.59 -17.46 2.97 -822.16 -2.44 -19.90 16
16 C 0.54 17.34 6.13 86.78 0.53 17.87 16
17 O -0.56 -23.62 13.95 -3.89 -0.05 -23.68 16
18 C -0.14 -3.31 4.83 -20.00 -0.10 -3.40 16
19 C 0.14 2.29 8.65 85.04 0.74 3.02 16
20 N -0.47 -6.17 10.35 -194.76 -2.02 -8.18 16
21 C 0.14 1.14 11.17 84.69 0.95 2.09 16
22 C -0.12 -1.35 9.49 22.32 0.21 -1.14 16
23 C -0.11 -2.38 5.43 -19.40 -0.11 -2.48 16
24 C 0.50 13.56 2.89 71.24 0.21 13.77 16
25 F -0.17 -3.66 16.08 44.97 0.72 -2.94 16
26 F -0.17 -5.93 14.80 44.97 0.67 -5.27 16
27 F -0.18 -5.92 16.62 44.97 0.75 -5.17 16
28 C 0.11 4.19 6.00 86.36 0.52 4.71 16
29 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16
30 H 0.38 20.13 7.80 -92.71 -0.72 19.40 16
31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16
32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
33 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16
34 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16
35 H 0.10 1.49 4.81 -2.39 -0.01 1.48 16
36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16
37 H 0.19 2.28 7.47 -2.91 -0.02 2.26 16
38 H 0.22 -0.17 8.06 -2.91 -0.02 -0.19 16
39 H 0.19 1.09 7.26 -2.91 -0.02 1.06 16
40 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16
41 H 0.05 2.31 7.03 -2.39 -0.02 2.29 16
Total: -1.00 -78.36 349.31 3.87 -74.49
By element:
Atomic # 1 Polarization: 16.48 SS G_CDS: 0.37 Total: 16.86 kcal
Atomic # 6 Polarization: 16.01 SS G_CDS: 5.21 Total: 21.22 kcal
Atomic # 7 Polarization: -119.59 SS G_CDS: -5.83 Total: -125.42 kcal
Atomic # 8 Polarization: -23.62 SS G_CDS: -0.05 Total: -23.68 kcal
Atomic # 9 Polarization: -15.52 SS G_CDS: 2.14 Total: -13.38 kcal
Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal
Total: -78.36 3.87 -74.49 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001000315842.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.906 kcal
(2) G-P(sol) polarization free energy of solvation -78.357 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.264 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.490 kcal
(6) G-S(sol) free energy of system = (1) + (5) -146.397 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds