Wall clock time and date at job start Sat Apr 11 2020 06:49:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31409 * 1
3 3 Si 1.86802 * 119.99829 * 2 1
4 4 H 1.48499 * 109.47205 * 270.00053 * 3 2 1
5 5 H 1.48492 * 109.47157 * 30.00248 * 3 2 1
6 6 H 1.48502 * 109.47074 * 150.00239 * 3 2 1
7 7 C 1.38953 * 120.00067 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99670 * 179.97438 * 7 2 1
9 9 N 1.37094 * 120.00239 * 0.02562 * 7 2 1
10 10 C 1.34775 * 120.00169 * 180.02562 * 9 7 2
11 11 O 1.21290 * 120.00015 * 359.97438 * 10 9 7
12 12 C 1.50705 * 119.99911 * 179.97438 * 10 9 7
13 13 N 1.46904 * 109.46807 * 179.97438 * 12 10 9
14 14 C 1.46898 * 110.99459 * 179.97438 * 13 12 10
15 15 C 1.53004 * 109.46947 * 179.97438 * 14 13 12
16 16 N 1.46499 * 109.47198 * 180.02562 * 15 14 13
17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14
18 18 O 1.21473 * 120.00341 * 359.72050 * 17 16 15
19 19 C 1.48460 * 119.99746 * 179.72338 * 17 16 15
20 20 C 1.39534 * 120.54763 * 179.97438 * 19 17 16
21 21 C 1.38764 * 118.26008 * 180.02562 * 20 19 17
22 22 C 1.50696 * 120.42486 * 180.02562 * 21 20 19
23 23 F 1.39895 * 109.47243 * 300.00598 * 22 21 20
24 24 F 1.39905 * 109.46792 * 60.00418 * 22 21 20
25 25 N 1.32201 * 119.14831 * 0.02562 * 21 20 19
26 26 C 1.31884 * 121.03867 * 359.97438 * 25 21 20
27 27 N 1.31584 * 121.91592 * 359.71965 * 26 25 21
28 28 H 0.96999 * 120.00459 * 359.97438 * 1 2 3
29 29 H 0.97001 * 119.99386 * 359.97438 * 9 7 2
30 30 H 1.08992 * 109.47001 * 59.99355 * 12 10 9
31 31 H 1.09001 * 109.46613 * 299.99743 * 12 10 9
32 32 H 1.00894 * 110.99641 * 303.95280 * 13 12 10
33 33 H 1.08995 * 109.47478 * 60.00426 * 14 13 12
34 34 H 1.09006 * 109.47065 * 299.99823 * 14 13 12
35 35 H 1.09009 * 109.46730 * 59.99875 * 15 14 13
36 36 H 1.08998 * 109.46846 * 300.00419 * 15 14 13
37 37 H 0.97001 * 119.99790 * 359.97438 * 16 15 14
38 38 H 1.07991 * 120.87208 * 359.97438 * 20 19 17
39 39 H 1.08995 * 109.47189 * 180.02562 * 22 21 20
40 40 H 1.08002 * 119.04280 * 180.02562 * 26 25 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6178 0.0000
4 1 2.4955 2.0465 -1.4001
5 1 1.4455 2.6526 0.7000
6 1 3.5456 1.4402 0.7000
7 6 2.0089 -1.2034 -0.0005
8 1 3.0889 -1.2033 -0.0010
9 7 1.3235 -2.3907 -0.0016
10 6 1.9974 -3.5578 -0.0016
11 8 3.2103 -3.5578 -0.0011
12 6 1.2438 -4.8630 -0.0022
13 7 2.1985 -5.9795 -0.0027
14 6 1.4982 -7.2708 -0.0026
15 6 2.5231 -8.4068 -0.0038
16 7 1.8248 -9.6946 -0.0044
17 6 2.5296 -10.8434 0.0002
18 8 3.7439 -10.8110 -0.0003
19 6 1.8219 -12.1485 0.0058
20 6 2.5402 -13.3447 0.0101
21 6 1.8306 -14.5372 0.0148
22 6 2.5569 -15.8575 0.0201
23 9 3.3598 -15.9527 -1.1216
24 9 3.3593 -15.9436 1.1629
25 7 0.5091 -14.5000 0.0144
26 6 -0.1389 -13.3514 0.0103
27 7 0.4920 -12.1967 0.0118
28 1 -0.4851 0.8400 0.0004
29 1 0.3535 -2.3906 -0.0016
30 1 0.6175 -4.9205 -0.8923
31 1 0.6169 -4.9209 0.8876
32 1 2.8333 -5.9120 -0.7840
33 1 0.8731 -7.3452 -0.8924
34 1 0.8736 -7.3454 0.8876
35 1 3.1487 -8.3326 0.8858
36 1 3.1474 -8.3320 -0.8942
37 1 0.8551 -9.7205 -0.0037
38 1 3.6201 -13.3426 0.0090
39 1 1.8317 -16.6711 0.0227
40 1 -1.2189 -13.3587 0.0106
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001130231718.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:26
Heat of formation + Delta-G solvation = -114.202948 kcal
Electronic energy + Delta-G solvation = -27381.284264 eV
Core-core repulsion = 22674.338356 eV
Total energy + Delta-G solvation = -4706.945908 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.124 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-49.75103 -47.73632 -42.00588 -39.87039 -38.35297 -36.47066 -35.18639 -34.41695
-33.77110 -33.19155 -31.26364 -29.67307 -28.39360 -26.60800 -25.38412 -24.35812
-23.75759 -22.23770 -21.34303 -19.35723 -19.17815 -19.00403 -18.00420 -17.93000
-17.67747 -16.70792 -16.46393 -16.30655 -16.21567 -15.94021 -15.72920 -15.64092
-15.05553 -14.64159 -14.56668 -14.47345 -14.08140 -13.97456 -13.95193 -13.59683
-13.46973 -13.22191 -12.51060 -12.23875 -11.99385 -11.85243 -11.69668 -11.56800
-11.51675 -11.48267 -11.05104 -10.99552 -10.59077 -10.40563 -10.24007 -10.17843
-9.53329 -9.48298 -8.54151 -8.17372 -7.98930 -6.44004 -3.84895 -0.34396
-0.07883 2.11153 2.28211 2.41796 2.99975 3.14499 3.16727 3.25718
3.31816 3.38894 3.45186 3.80452 3.87388 4.06181 4.12457 4.20572
4.21181 4.36240 4.55832 4.74595 4.79009 4.90830 5.13100 5.23280
5.30630 5.33051 5.67217 5.69734 5.80335 5.84873 5.90419 5.98655
6.21522 6.89063 7.04142 7.11291 7.51327 7.53382 7.61626 8.03671
8.58391 9.15541 9.51281 10.02506 10.73644
Molecular weight = 343.12amu
Principal moments of inertia in cm(-1)
A = 0.038775 B = 0.001368 C = 0.001333
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 721.932868 B =20468.392542 C =20997.835935
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.023 3.977
3 Si 0.931 3.069
4 H -0.278 1.278
5 H -0.284 1.284
6 H -0.269 1.269
7 C -0.300 4.300
8 H 0.104 0.896
9 N -0.563 5.563
10 C 0.439 3.561
11 O -0.582 6.582
12 C 0.052 3.948
13 N -0.665 5.665
14 C 0.049 3.951
15 C 0.117 3.883
16 N -0.700 5.700
17 C 0.568 3.432
18 O -0.514 6.514
19 C 0.144 3.856
20 C -0.132 4.132
21 C 0.100 3.900
22 C 0.328 3.672
23 F -0.185 7.185
24 F -0.185 7.185
25 N -0.481 5.481
26 C 0.303 3.697
27 N -0.480 5.480
28 H 0.272 0.728
29 H 0.392 0.608
30 H 0.046 0.954
31 H 0.088 0.912
32 H 0.353 0.647
33 H 0.035 0.965
34 H 0.079 0.921
35 H 0.087 0.913
36 H 0.075 0.925
37 H 0.412 0.588
38 H 0.169 0.831
39 H 0.141 0.859
40 H 0.215 0.785
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.484 -32.264 -0.886 32.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C -0.179 4.179
3 Si 0.758 3.242
4 H -0.204 1.204
5 H -0.209 1.209
6 H -0.194 1.194
7 C -0.430 4.430
8 H 0.121 0.879
9 N -0.199 5.199
10 C 0.225 3.775
11 O -0.466 6.466
12 C -0.080 4.080
13 N -0.298 5.298
14 C -0.081 4.081
15 C -0.006 4.006
16 N -0.352 5.352
17 C 0.350 3.650
18 O -0.388 6.388
19 C -0.006 4.006
20 C -0.155 4.155
21 C -0.049 4.049
22 C 0.273 3.727
23 F -0.167 7.167
24 F -0.166 7.166
25 N -0.195 5.195
26 C 0.015 3.985
27 N -0.196 5.196
28 H 0.081 0.919
29 H 0.226 0.774
30 H 0.064 0.936
31 H 0.106 0.894
32 H 0.172 0.828
33 H 0.053 0.947
34 H 0.098 0.902
35 H 0.105 0.895
36 H 0.093 0.907
37 H 0.248 0.752
38 H 0.187 0.813
39 H 0.159 0.841
40 H 0.231 0.769
Dipole moment (debyes) X Y Z Total
from point charges -3.755 -31.980 -0.198 32.201
hybrid contribution -0.245 0.850 -0.900 1.262
sum -4.000 -31.130 -1.097 31.406
Atomic orbital electron populations
1.69607 1.05951 1.28200 1.50529 1.25265 0.95637 0.99745 0.97240
0.85846 0.79270 0.80734 0.78383 1.20415 1.20912 1.19372 1.19718
0.93419 0.82212 1.47651 0.87867 1.41851 1.09201 1.04587 1.64281
1.19765 0.88393 0.84686 0.84689 1.90535 1.13716 1.87013 1.55370
1.21672 0.94195 0.90748 1.01405 1.59924 1.18890 0.99378 1.51653
1.22073 0.95432 0.89274 1.01341 1.21449 0.95155 0.80031 1.04008
1.45727 1.11337 1.05327 1.72798 1.17609 0.86561 0.82732 0.78111
1.90865 1.12466 1.86583 1.48894 1.21754 0.89823 0.94798 0.94194
1.22787 1.04463 0.91941 0.96264 1.22100 0.91203 0.95445 0.96155
1.20102 0.85396 0.95224 0.71969 1.93078 1.75939 1.96953 1.50690
1.93082 1.75957 1.97023 1.50583 1.67978 1.08236 1.32312 1.10983
1.25116 1.01520 0.81208 0.90673 1.68387 1.08946 1.31518 1.10766
0.91854 0.77447 0.93643 0.89399 0.82752 0.94683 0.90228 0.89523
0.90699 0.75175 0.81322 0.84138 0.76872
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16
2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16
3 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16
4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16
5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16
8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16
9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16
10 C 0.44 10.19 7.82 -10.98 -0.09 10.10 16
11 O -0.58 -15.68 15.78 5.55 0.09 -15.60 16
12 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16
13 N -0.67 -10.09 6.13 -115.05 -0.70 -10.80 16
14 C 0.05 0.52 5.80 -3.82 -0.02 0.50 16
15 C 0.12 1.23 5.93 -4.04 -0.02 1.20 16
16 N -0.70 -6.38 5.55 -61.05 -0.34 -6.72 16
17 C 0.57 6.04 7.83 -12.05 -0.09 5.95 16
18 O -0.51 -7.09 16.43 5.39 0.09 -7.00 16
19 C 0.14 1.26 6.79 -82.63 -0.56 0.70 16
20 C -0.13 -1.07 9.32 -38.90 -0.36 -1.43 16
21 C 0.10 0.69 6.31 -82.24 -0.52 0.17 16
22 C 0.33 1.73 5.58 36.00 0.20 1.93 16
23 F -0.19 -1.27 17.27 2.25 0.04 -1.23 16
24 F -0.19 -1.27 17.27 2.25 0.04 -1.23 16
25 N -0.48 -3.07 10.35 -10.81 -0.11 -3.18 16
26 C 0.30 1.67 12.28 -92.26 -1.13 0.53 16
27 N -0.48 -3.48 9.70 -11.13 -0.11 -3.59 16
28 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16
29 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16
30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
31 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16
32 H 0.35 5.54 8.43 -39.29 -0.33 5.21 16
33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16
34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
35 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16
36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
37 H 0.41 2.96 7.86 -40.82 -0.32 2.64 16
38 H 0.17 1.33 7.74 -52.49 -0.41 0.93 16
39 H 0.14 0.31 8.12 -51.93 -0.42 -0.11 16
40 H 0.22 0.35 8.06 -52.49 -0.42 -0.07 16
LS Contribution 369.10 15.07 5.56 5.56
Total: -1.00 -34.06 369.10 -6.95 -41.01
By element:
Atomic # 1 Polarization: 16.26 SS G_CDS: -4.27 Total: 11.99 kcal
Atomic # 6 Polarization: 15.41 SS G_CDS: -2.87 Total: 12.54 kcal
Atomic # 7 Polarization: -61.35 SS G_CDS: -0.60 Total: -61.94 kcal
Atomic # 8 Polarization: -22.77 SS G_CDS: 0.18 Total: -22.60 kcal
Atomic # 9 Polarization: -2.54 SS G_CDS: 0.08 Total: -2.46 kcal
Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -34.06 -6.95 -41.01 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001130231718.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -73.195 kcal
(2) G-P(sol) polarization free energy of solvation -34.059 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.254 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.203 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds