Wall clock time and date at job start Sat Apr 11 2020 06:49:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31409 * 1
3 3 Si 1.86802 * 119.99829 * 2 1
4 4 H 1.48499 * 109.47205 * 270.00053 * 3 2 1
5 5 H 1.48492 * 109.47157 * 30.00248 * 3 2 1
6 6 H 1.48502 * 109.47074 * 150.00239 * 3 2 1
7 7 C 1.38953 * 120.00067 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99670 * 179.97438 * 7 2 1
9 9 N 1.37094 * 120.00239 * 0.02562 * 7 2 1
10 10 C 1.34775 * 120.00169 * 180.02562 * 9 7 2
11 11 O 1.21290 * 120.00015 * 359.97438 * 10 9 7
12 12 C 1.50705 * 119.99911 * 179.97438 * 10 9 7
13 13 N 1.46904 * 109.46807 * 179.97438 * 12 10 9
14 14 C 1.46898 * 110.99459 * 179.97438 * 13 12 10
15 15 C 1.53004 * 109.46947 * 179.97438 * 14 13 12
16 16 N 1.46499 * 109.47198 * 180.02562 * 15 14 13
17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14
18 18 O 1.21473 * 120.00341 * 359.72050 * 17 16 15
19 19 C 1.48460 * 119.99746 * 179.72338 * 17 16 15
20 20 C 1.39534 * 120.54763 * 179.97438 * 19 17 16
21 21 C 1.38764 * 118.26008 * 180.02562 * 20 19 17
22 22 C 1.50696 * 120.42486 * 180.02562 * 21 20 19
23 23 F 1.39895 * 109.47243 * 300.00598 * 22 21 20
24 24 F 1.39905 * 109.46792 * 60.00418 * 22 21 20
25 25 N 1.32201 * 119.14831 * 0.02562 * 21 20 19
26 26 C 1.31884 * 121.03867 * 359.97438 * 25 21 20
27 27 N 1.31584 * 121.91592 * 359.71965 * 26 25 21
28 28 H 0.96999 * 120.00459 * 359.97438 * 1 2 3
29 29 H 0.97001 * 119.99386 * 359.97438 * 9 7 2
30 30 H 1.08992 * 109.47001 * 59.99355 * 12 10 9
31 31 H 1.09001 * 109.46613 * 299.99743 * 12 10 9
32 32 H 1.00894 * 110.99641 * 303.95280 * 13 12 10
33 33 H 1.08995 * 109.47478 * 60.00426 * 14 13 12
34 34 H 1.09006 * 109.47065 * 299.99823 * 14 13 12
35 35 H 1.09009 * 109.46730 * 59.99875 * 15 14 13
36 36 H 1.08998 * 109.46846 * 300.00419 * 15 14 13
37 37 H 0.97001 * 119.99790 * 359.97438 * 16 15 14
38 38 H 1.07991 * 120.87208 * 359.97438 * 20 19 17
39 39 H 1.08995 * 109.47189 * 180.02562 * 22 21 20
40 40 H 1.08002 * 119.04280 * 180.02562 * 26 25 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6178 0.0000
4 1 2.4955 2.0465 -1.4001
5 1 1.4455 2.6526 0.7000
6 1 3.5456 1.4402 0.7000
7 6 2.0089 -1.2034 -0.0005
8 1 3.0889 -1.2033 -0.0010
9 7 1.3235 -2.3907 -0.0016
10 6 1.9974 -3.5578 -0.0016
11 8 3.2103 -3.5578 -0.0011
12 6 1.2438 -4.8630 -0.0022
13 7 2.1985 -5.9795 -0.0027
14 6 1.4982 -7.2708 -0.0026
15 6 2.5231 -8.4068 -0.0038
16 7 1.8248 -9.6946 -0.0044
17 6 2.5296 -10.8434 0.0002
18 8 3.7439 -10.8110 -0.0003
19 6 1.8219 -12.1485 0.0058
20 6 2.5402 -13.3447 0.0101
21 6 1.8306 -14.5372 0.0148
22 6 2.5569 -15.8575 0.0201
23 9 3.3598 -15.9527 -1.1216
24 9 3.3593 -15.9436 1.1629
25 7 0.5091 -14.5000 0.0144
26 6 -0.1389 -13.3514 0.0103
27 7 0.4920 -12.1967 0.0118
28 1 -0.4851 0.8400 0.0004
29 1 0.3535 -2.3906 -0.0016
30 1 0.6175 -4.9205 -0.8923
31 1 0.6169 -4.9209 0.8876
32 1 2.8333 -5.9120 -0.7840
33 1 0.8731 -7.3452 -0.8924
34 1 0.8736 -7.3454 0.8876
35 1 3.1487 -8.3326 0.8858
36 1 3.1474 -8.3320 -0.8942
37 1 0.8551 -9.7205 -0.0037
38 1 3.6201 -13.3426 0.0090
39 1 1.8317 -16.6711 0.0227
40 1 -1.2189 -13.3587 0.0106
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001130231718.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:25
Heat of formation + Delta-G solvation = -141.591619 kcal
Electronic energy + Delta-G solvation = -27382.471926 eV
Core-core repulsion = 22674.338356 eV
Total energy + Delta-G solvation = -4708.133570 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.124 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-50.22114 -48.21967 -42.56947 -40.69723 -40.14135 -37.57921 -36.07012 -35.75840
-35.14148 -33.74552 -33.26557 -30.76172 -28.91016 -27.92874 -26.47404 -25.36065
-24.71713 -23.15615 -22.09936 -21.10052 -19.94183 -19.82538 -19.55351 -18.47668
-18.20865 -17.79615 -17.42548 -17.29355 -16.91611 -16.82601 -16.74943 -16.47347
-16.18946 -15.89132 -15.83341 -15.29601 -15.21508 -15.07010 -14.85684 -14.57381
-14.41209 -14.07540 -14.03035 -13.52667 -13.33058 -12.94585 -12.66333 -12.62747
-12.48062 -12.41279 -12.38968 -12.22097 -12.12153 -11.83748 -11.50656 -11.16236
-10.77326 -10.36526 -10.33423 -10.01284 -9.39165 -8.46708 -5.95284 -0.95767
-0.59874 1.38333 1.38866 1.42518 1.54191 1.56973 1.91748 2.05649
2.29641 2.40601 2.57633 2.85072 3.03010 3.08414 3.20838 3.29348
3.52425 3.58605 3.76802 3.77548 3.84624 4.03159 4.08919 4.26985
4.31982 4.44931 4.50681 4.61188 4.83692 4.87755 4.89782 5.10443
5.34504 5.41379 5.83199 6.06299 6.18711 6.32240 6.54812 6.60389
6.84553 7.13020 7.56586 8.12203 8.70519
Molecular weight = 343.12amu
Principal moments of inertia in cm(-1)
A = 0.038775 B = 0.001368 C = 0.001333
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 721.932868 B =20468.392542 C =20997.835935
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C -0.011 4.011
3 Si 0.992 3.008
4 H -0.271 1.271
5 H -0.270 1.270
6 H -0.275 1.275
7 C -0.336 4.336
8 H 0.078 0.922
9 N -0.572 5.572
10 C 0.435 3.565
11 O -0.625 6.625
12 C 0.068 3.932
13 N -0.685 5.685
14 C 0.058 3.942
15 C 0.124 3.876
16 N -0.686 5.686
17 C 0.566 3.434
18 O -0.554 6.554
19 C 0.134 3.866
20 C -0.146 4.146
21 C 0.102 3.898
22 C 0.328 3.672
23 F -0.196 7.196
24 F -0.196 7.196
25 N -0.478 5.478
26 C 0.306 3.694
27 N -0.482 5.482
28 H 0.278 0.722
29 H 0.398 0.602
30 H 0.074 0.926
31 H 0.109 0.891
32 H 0.347 0.653
33 H 0.058 0.942
34 H 0.094 0.906
35 H 0.069 0.931
36 H 0.067 0.933
37 H 0.424 0.576
38 H 0.162 0.838
39 H 0.178 0.822
40 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.757 -33.378 -0.993 34.070
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.559 5.559
2 C -0.211 4.211
3 Si 0.816 3.184
4 H -0.196 1.196
5 H -0.195 1.195
6 H -0.199 1.199
7 C -0.466 4.466
8 H 0.096 0.904
9 N -0.209 5.209
10 C 0.223 3.777
11 O -0.512 6.512
12 C -0.064 4.064
13 N -0.318 5.318
14 C -0.071 4.071
15 C 0.000 4.000
16 N -0.338 5.338
17 C 0.349 3.651
18 O -0.431 6.431
19 C -0.015 4.015
20 C -0.169 4.169
21 C -0.048 4.048
22 C 0.274 3.726
23 F -0.177 7.177
24 F -0.177 7.177
25 N -0.192 5.192
26 C 0.019 3.981
27 N -0.198 5.198
28 H 0.087 0.913
29 H 0.232 0.768
30 H 0.091 0.909
31 H 0.127 0.873
32 H 0.166 0.834
33 H 0.076 0.924
34 H 0.113 0.887
35 H 0.087 0.913
36 H 0.085 0.915
37 H 0.262 0.738
38 H 0.179 0.821
39 H 0.195 0.805
40 H 0.270 0.730
Dipole moment (debyes) X Y Z Total
from point charges -6.097 -33.110 -0.303 33.668
hybrid contribution 0.422 1.109 -0.864 1.468
sum -5.675 -32.001 -1.167 32.521
Atomic orbital electron populations
1.69659 1.06751 1.29306 1.50231 1.26006 0.96538 1.02313 0.96224
0.84943 0.77873 0.76978 0.78637 1.19623 1.19501 1.19948 1.19670
0.92721 0.84132 1.50054 0.90423 1.41913 1.09370 1.04652 1.64993
1.20938 0.88273 0.86296 0.82240 1.90504 1.16007 1.87987 1.56681
1.21527 0.93739 0.87480 1.03673 1.59884 1.19361 1.00719 1.51832
1.22063 0.95182 0.86794 1.03098 1.21247 0.95124 0.80765 1.02856
1.45572 1.11814 1.04489 1.71957 1.17911 0.86220 0.83654 0.77275
1.90841 1.14216 1.87246 1.50800 1.21453 0.90626 0.93851 0.95582
1.22811 1.04356 0.92483 0.97250 1.22346 0.91546 0.95588 0.95320
1.20475 0.85445 0.95551 0.71120 1.93056 1.76376 1.96964 1.51298
1.93060 1.76402 1.97036 1.51209 1.68084 1.07753 1.32658 1.10753
1.25976 1.02999 0.80320 0.88843 1.68409 1.07939 1.32466 1.11023
0.91275 0.76842 0.90858 0.87254 0.83428 0.92358 0.88742 0.91303
0.91457 0.73761 0.82081 0.80514 0.72983
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16
2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16
3 Si 0.99 42.70 29.55 68.60 2.03 44.73 16
4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16
5 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16
6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
7 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16
8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16
9 N -0.57 -28.83 5.29 -306.98 -1.62 -30.46 16
10 C 0.43 20.24 7.82 87.66 0.69 20.93 16
11 O -0.63 -34.50 15.78 -3.06 -0.05 -34.55 16
12 C 0.07 2.15 6.17 85.56 0.53 2.68 16
13 N -0.68 -19.96 6.13 -517.92 -3.17 -23.13 16
14 C 0.06 1.11 5.80 86.30 0.50 1.61 16
15 C 0.12 2.54 5.93 86.38 0.51 3.05 16
16 N -0.69 -11.86 5.55 -465.37 -2.58 -14.44 16
17 C 0.57 12.10 7.83 86.97 0.68 12.79 16
18 O -0.55 -15.94 16.43 -3.63 -0.06 -16.00 16
19 C 0.13 2.27 6.79 42.00 0.29 2.56 16
20 C -0.15 -2.35 9.32 22.71 0.21 -2.14 16
21 C 0.10 1.27 6.31 42.63 0.27 1.54 16
22 C 0.33 3.03 5.58 71.23 0.40 3.42 16
23 F -0.20 -2.54 17.27 44.97 0.78 -1.76 16
24 F -0.20 -2.55 17.27 44.97 0.78 -1.78 16
25 N -0.48 -4.97 10.35 -188.12 -1.95 -6.92 16
26 C 0.31 2.52 12.28 180.92 2.22 4.74 16
27 N -0.48 -6.07 9.70 -189.14 -1.84 -7.91 16
28 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16
29 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16
30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16
31 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16
32 H 0.35 10.79 8.43 -89.70 -0.76 10.03 16
33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
34 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16
35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16
36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16
37 H 0.42 5.24 7.86 -92.71 -0.73 4.51 16
38 H 0.16 2.75 7.74 -2.92 -0.02 2.73 16
39 H 0.18 0.33 8.12 -2.39 -0.02 0.32 16
40 H 0.25 -0.19 8.06 -2.91 -0.02 -0.21 16
Total: -1.00 -75.45 369.10 -0.90 -76.35
By element:
Atomic # 1 Polarization: 32.66 SS G_CDS: -1.07 Total: 31.59 kcal
Atomic # 6 Polarization: 25.30 SS G_CDS: 7.57 Total: 32.88 kcal
Atomic # 7 Polarization: -120.58 SS G_CDS: -10.88 Total: -131.46 kcal
Atomic # 8 Polarization: -50.44 SS G_CDS: -0.11 Total: -50.55 kcal
Atomic # 9 Polarization: -5.09 SS G_CDS: 1.55 Total: -3.54 kcal
Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal
Total: -75.45 -0.90 -76.35 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001130231718.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.244 kcal
(2) G-P(sol) polarization free energy of solvation -75.446 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.690 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.902 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.348 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.592 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds