Wall clock time and date at job start Sat Apr 11 2020 06:49:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50711 * 1
3 3 C 1.35538 * 120.49778 * 2 1
4 4 N 1.36166 * 119.25536 * 179.97438 * 3 2 1
5 5 C 1.46497 * 119.85358 * 179.97438 * 4 3 2
6 6 C 1.50697 * 109.47426 * 90.00038 * 5 4 3
7 7 O 1.21292 * 119.99814 * 354.98239 * 6 5 4
8 8 N 1.34776 * 120.00406 * 174.98895 * 6 5 4
9 9 C 1.37100 * 119.99652 * 4.55128 * 8 6 5
10 10 H 1.07993 * 120.00034 * 318.40954 * 9 8 6
11 11 C 1.38950 * 119.99725 * 138.40570 * 9 8 6
12 12 N 1.31409 * 120.00415 * 352.81249 * 11 9 8
13 13 Si 1.86801 * 119.99667 * 172.80627 * 11 9 8
14 14 H 1.48506 * 109.47055 * 90.00307 * 13 11 9
15 15 H 1.48501 * 109.47032 * 210.00181 * 13 11 9
16 16 H 1.48500 * 109.47467 * 330.00449 * 13 11 9
17 17 C 1.46499 * 120.00405 * 184.55301 * 8 6 5
18 18 C 1.50703 * 109.47051 * 89.99692 * 17 8 6
19 19 C 1.38233 * 119.99710 * 269.72848 * 18 17 8
20 20 C 1.38240 * 119.99404 * 179.76985 * 19 18 17
21 21 C 1.38236 * 119.99997 * 0.50526 * 20 19 18
22 22 C 1.38232 * 119.99984 * 359.74781 * 21 20 19
23 23 C 1.38226 * 119.99829 * 90.00451 * 18 17 8
24 24 C 1.34576 * 120.29320 * 359.97438 * 4 3 2
25 25 O 1.21975 * 119.47709 * 179.97438 * 24 4 3
26 26 N 1.33268 * 121.05044 * 359.97438 * 24 4 3
27 27 C 1.32433 * 120.73181 * 359.77402 * 26 24 4
28 28 O 1.35150 * 120.16905 * 180.26060 * 27 26 24
29 29 H 1.08994 * 109.47235 * 89.99835 * 1 2 3
30 30 H 1.09004 * 109.46567 * 329.99630 * 1 2 3
31 31 H 1.08999 * 109.46993 * 210.00366 * 1 2 3
32 32 H 1.08000 * 120.37747 * 359.95942 * 3 2 1
33 33 H 1.09001 * 109.47160 * 210.00162 * 5 4 3
34 34 H 1.09009 * 109.47176 * 329.99803 * 5 4 3
35 35 H 0.97004 * 120.00295 * 185.00562 * 12 11 9
36 36 H 1.09000 * 109.47472 * 210.00384 * 17 8 6
37 37 H 1.09001 * 109.46978 * 330.00119 * 17 8 6
38 38 H 1.07996 * 120.00447 * 359.97438 * 19 18 17
39 39 H 1.08003 * 119.99728 * 180.23121 * 20 19 18
40 40 H 1.07999 * 119.99659 * 179.73341 * 21 20 19
41 41 H 1.07997 * 120.00053 * 179.97438 * 22 21 20
42 42 H 1.08010 * 120.00234 * 359.97438 * 23 18 17
43 43 H 0.96701 * 114.00310 * 0.22046 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1950 1.1679 0.0000
4 7 3.5563 1.1383 0.0005
5 6 4.3129 2.3928 0.0000
6 6 4.5719 2.8240 1.4205
7 8 4.0878 2.2004 2.3414
8 7 5.3413 3.9025 1.6679
9 6 5.8115 4.6621 0.6279
10 1 6.1822 4.1831 -0.2662
11 6 5.8111 6.0482 0.7243
12 7 5.2328 6.6356 1.7477
13 14 6.6328 7.0768 -0.6010
14 1 5.6445 7.3984 -1.6619
15 1 7.1451 8.3361 -0.0037
16 1 7.7617 6.3137 -1.1912
17 6 5.6752 4.2633 3.0479
18 6 6.9524 3.5732 3.4526
19 6 6.9060 2.3231 4.0408
20 6 8.0779 1.6881 4.4076
21 6 9.2953 2.3077 4.1957
22 6 9.3412 3.5601 3.6123
23 6 8.1697 4.1928 3.2407
24 6 4.2098 -0.0381 0.0016
25 8 5.4295 -0.0472 0.0016
26 7 3.5455 -1.1934 0.0026
27 6 2.2213 -1.2127 0.0071
28 8 1.5592 -2.3909 0.0135
29 1 -0.3633 0.0000 -1.0276
30 1 -0.3632 0.8900 0.5139
31 1 -0.3633 -0.8899 0.5139
32 1 1.6693 2.1113 -0.0007
33 1 5.2629 2.2439 -0.5134
34 1 3.7387 3.1633 -0.5147
35 1 5.1685 7.6030 1.7790
36 1 5.8070 5.3429 3.1196
37 1 4.8679 3.9511 3.7105
38 1 5.9547 1.8411 4.2107
39 1 8.0420 0.7098 4.8637
40 1 10.2106 1.8134 4.4862
41 1 10.2923 4.0443 3.4471
42 1 8.2056 5.1713 2.7848
43 1 2.1366 -3.1666 0.0176
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001142317300.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:29
Heat of formation + Delta-G solvation = -30.958299 kcal
Electronic energy + Delta-G solvation = -30197.072648 eV
Core-core repulsion = 26015.673278 eV
Total energy + Delta-G solvation = -4181.399370 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.57753 -39.22170 -38.62230 -37.86126 -36.51993 -35.10422 -34.19107 -32.80216
-31.97545 -30.95188 -30.23766 -28.31535 -26.48174 -25.77993 -24.76887 -24.20092
-22.27578 -21.88326 -20.70097 -19.64202 -19.41310 -18.08047 -17.61391 -16.83315
-16.16018 -15.75163 -15.60353 -15.40047 -14.87237 -14.53673 -14.48533 -14.36687
-14.27840 -14.00567 -13.82812 -13.72633 -13.21906 -12.97072 -12.82148 -12.77027
-12.57618 -12.16146 -12.01379 -11.58211 -11.48029 -11.38624 -11.31645 -11.04153
-10.81527 -10.52459 -10.48873 -10.37999 -10.19630 -10.03821 -9.59682 -9.35799
-8.85323 -8.28156 -8.18711 -7.99955 -7.67508 -6.52238 -4.36657 0.87531
1.84993 1.97469 2.04705 2.68671 2.98389 3.10346 3.13659 3.24998
3.60985 3.91372 4.02555 4.34675 4.42978 4.66970 4.77540 4.82928
4.85923 5.17031 5.37739 5.46852 5.50892 5.51475 5.61533 5.62803
5.83056 5.88222 5.90935 5.92826 6.03912 6.15779 6.21947 6.35284
6.47629 6.63706 6.65451 6.77160 7.07571 7.08134 7.09581 7.12731
7.32167 7.47695 7.65605 7.77911 8.04577 8.17417 8.44360 8.84995
9.21732 9.66718 10.46383
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.010371 B = 0.004135 C = 0.003312
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2699.153277 B = 6770.342190 C = 8451.617428
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C -0.271 4.271
3 C 0.222 3.778
4 N -0.499 5.499
5 C 0.091 3.909
6 C 0.467 3.533
7 O -0.593 6.593
8 N -0.424 5.424
9 C -0.342 4.342
10 H 0.089 0.911
11 C 0.050 3.950
12 N -0.865 5.865
13 Si 0.918 3.082
14 H -0.274 1.274
15 H -0.280 1.280
16 H -0.267 1.267
17 C 0.139 3.861
18 C -0.080 4.080
19 C -0.104 4.104
20 C -0.130 4.130
21 C -0.133 4.133
22 C -0.133 4.133
23 C -0.095 4.095
24 C 0.658 3.342
25 O -0.531 6.531
26 N -0.617 5.617
27 C 0.458 3.542
28 O -0.451 6.451
29 H 0.064 0.936
30 H 0.067 0.933
31 H 0.071 0.929
32 H 0.179 0.821
33 H 0.121 0.879
34 H 0.119 0.881
35 H 0.274 0.726
36 H 0.130 0.870
37 H 0.063 0.937
38 H 0.120 0.880
39 H 0.111 0.889
40 H 0.111 0.889
41 H 0.113 0.887
42 H 0.121 0.879
43 H 0.412 0.588
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.928 -5.754 -2.665 8.680
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.279 4.279
3 C 0.085 3.915
4 N -0.212 5.212
5 C -0.034 4.034
6 C 0.254 3.746
7 O -0.478 6.478
8 N -0.141 5.141
9 C -0.469 4.469
10 H 0.106 0.894
11 C -0.156 4.156
12 N -0.502 5.502
13 Si 0.743 3.257
14 H -0.200 1.200
15 H -0.205 1.205
16 H -0.191 1.191
17 C 0.016 3.984
18 C -0.081 4.081
19 C -0.122 4.122
20 C -0.148 4.148
21 C -0.151 4.151
22 C -0.151 4.151
23 C -0.114 4.114
24 C 0.359 3.641
25 O -0.405 6.405
26 N -0.374 5.374
27 C 0.257 3.743
28 O -0.246 6.246
29 H 0.083 0.917
30 H 0.086 0.914
31 H 0.090 0.910
32 H 0.196 0.804
33 H 0.139 0.861
34 H 0.137 0.863
35 H 0.085 0.915
36 H 0.147 0.853
37 H 0.081 0.919
38 H 0.138 0.862
39 H 0.130 0.870
40 H 0.129 0.871
41 H 0.131 0.869
42 H 0.139 0.861
43 H 0.269 0.731
Dipole moment (debyes) X Y Z Total
from point charges -5.164 -6.131 -2.104 8.287
hybrid contribution 0.521 0.771 -0.640 1.129
sum -4.643 -5.361 -2.744 7.604
Atomic orbital electron populations
1.20314 0.88188 1.03118 1.02134 1.19208 0.98455 0.89080 1.21203
1.22232 0.83146 0.99899 0.86267 1.46150 1.06267 1.10570 1.58211
1.21788 0.99514 0.82945 0.99203 1.20292 0.80916 0.83957 0.89466
1.90568 1.54042 1.57504 1.45672 1.43255 1.41761 1.23405 1.05701
1.19526 1.42249 0.88237 0.96935 0.89356 1.25445 0.95648 0.97328
0.97213 1.69609 1.40558 1.11053 1.28953 0.86058 0.79813 0.79355
0.80429 1.19994 1.20514 1.19109 1.20689 0.91280 1.03024 0.83361
1.20598 0.96618 0.94632 0.96232 1.21238 0.98197 0.94804 0.97995
1.21044 0.92855 0.99480 1.01468 1.20967 0.97234 0.95814 1.01123
1.21049 0.97908 0.95680 1.00424 1.21102 0.91817 1.00175 0.98298
1.17206 0.88146 0.79387 0.79324 1.91007 1.10742 1.85278 1.53508
1.69586 1.07043 1.27234 1.33528 1.20216 0.87550 0.86075 0.80504
1.84945 1.37488 1.14945 1.87180 0.91722 0.91450 0.91007 0.80425
0.86079 0.86292 0.91538 0.85287 0.91898 0.86226 0.87044 0.87095
0.86909 0.86082 0.73138
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.71 9.84 36.01 0.35 -0.36 16
2 C -0.27 -3.42 5.88 -104.64 -0.62 -4.04 16
3 C 0.22 3.06 10.04 -16.59 -0.17 2.89 16
4 N -0.50 -8.97 2.09 -123.16 -0.26 -9.23 16
5 C 0.09 1.72 4.57 -5.20 -0.02 1.69 16
6 C 0.47 10.72 7.69 -10.99 -0.08 10.63 16
7 O -0.59 -14.87 15.75 5.55 0.09 -14.78 16
8 N -0.42 -9.99 2.50 -116.10 -0.29 -10.28 16
9 C -0.34 -7.91 8.64 -14.93 -0.13 -8.04 16
10 H 0.09 1.99 7.01 -52.49 -0.37 1.62 16
11 C 0.05 1.13 5.25 -17.47 -0.09 1.04 16
12 N -0.87 -20.59 10.92 55.50 0.61 -19.98 16
13 Si 0.92 17.88 29.56 -169.99 -5.03 12.85 16
14 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16
15 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16
16 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16
17 C 0.14 3.23 5.15 -5.19 -0.03 3.20 16
18 C -0.08 -1.73 5.46 -104.63 -0.57 -2.30 16
19 C -0.10 -2.19 9.70 -39.58 -0.38 -2.57 16
20 C -0.13 -2.42 10.05 -39.58 -0.40 -2.81 16
21 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16
22 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16
23 C -0.10 -1.92 9.70 -39.59 -0.38 -2.30 16
24 C 0.66 13.79 8.34 -88.44 -0.74 13.05 16
25 O -0.53 -13.24 16.72 4.94 0.08 -13.16 16
26 N -0.62 -11.26 10.40 -16.72 -0.17 -11.43 16
27 C 0.46 6.49 7.88 -16.35 -0.13 6.36 16
28 O -0.45 -4.69 12.70 -17.15 -0.22 -4.91 16
29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16
31 H 0.07 0.64 7.60 -51.93 -0.39 0.24 16
32 H 0.18 1.81 8.06 -52.49 -0.42 1.38 16
33 H 0.12 2.41 6.81 -51.93 -0.35 2.06 16
34 H 0.12 1.85 8.03 -51.92 -0.42 1.44 16
35 H 0.27 6.18 8.32 -40.82 -0.34 5.85 16
36 H 0.13 3.13 5.20 -51.93 -0.27 2.86 16
37 H 0.06 1.51 7.31 -51.93 -0.38 1.13 16
38 H 0.12 2.65 7.83 -52.49 -0.41 2.24 16
39 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16
40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16
41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16
42 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16
43 H 0.41 2.84 8.98 45.56 0.41 3.25 16
LS Contribution 373.86 15.07 5.63 5.63
Total: -1.00 -33.04 373.86 -8.01 -41.06
By element:
Atomic # 1 Polarization: 17.48 SS G_CDS: -4.28 Total: 13.20 kcal
Atomic # 6 Polarization: 15.20 SS G_CDS: -4.18 Total: 11.02 kcal
Atomic # 7 Polarization: -50.81 SS G_CDS: -0.12 Total: -50.92 kcal
Atomic # 8 Polarization: -32.80 SS G_CDS: -0.05 Total: -32.84 kcal
Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -33.04 -8.01 -41.06 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001142317300.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.098 kcal
(2) G-P(sol) polarization free energy of solvation -33.042 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.945 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.958 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds