Wall clock time and date at job start Sat Apr 11 2020 06:49:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50711 * 1
3 3 C 1.35538 * 120.49778 * 2 1
4 4 N 1.36166 * 119.25536 * 179.97438 * 3 2 1
5 5 C 1.46497 * 119.85358 * 179.97438 * 4 3 2
6 6 C 1.50697 * 109.47426 * 90.00038 * 5 4 3
7 7 O 1.21292 * 119.99814 * 354.98239 * 6 5 4
8 8 N 1.34776 * 120.00406 * 174.98895 * 6 5 4
9 9 C 1.37100 * 119.99652 * 4.55128 * 8 6 5
10 10 H 1.07993 * 120.00034 * 318.40954 * 9 8 6
11 11 C 1.38950 * 119.99725 * 138.40570 * 9 8 6
12 12 N 1.31409 * 120.00415 * 352.81249 * 11 9 8
13 13 Si 1.86801 * 119.99667 * 172.80627 * 11 9 8
14 14 H 1.48506 * 109.47055 * 90.00307 * 13 11 9
15 15 H 1.48501 * 109.47032 * 210.00181 * 13 11 9
16 16 H 1.48500 * 109.47467 * 330.00449 * 13 11 9
17 17 C 1.46499 * 120.00405 * 184.55301 * 8 6 5
18 18 C 1.50703 * 109.47051 * 89.99692 * 17 8 6
19 19 C 1.38233 * 119.99710 * 269.72848 * 18 17 8
20 20 C 1.38240 * 119.99404 * 179.76985 * 19 18 17
21 21 C 1.38236 * 119.99997 * 0.50526 * 20 19 18
22 22 C 1.38232 * 119.99984 * 359.74781 * 21 20 19
23 23 C 1.38226 * 119.99829 * 90.00451 * 18 17 8
24 24 C 1.34576 * 120.29320 * 359.97438 * 4 3 2
25 25 O 1.21975 * 119.47709 * 179.97438 * 24 4 3
26 26 N 1.33268 * 121.05044 * 359.97438 * 24 4 3
27 27 C 1.32433 * 120.73181 * 359.77402 * 26 24 4
28 28 O 1.35150 * 120.16905 * 180.26060 * 27 26 24
29 29 H 1.08994 * 109.47235 * 89.99835 * 1 2 3
30 30 H 1.09004 * 109.46567 * 329.99630 * 1 2 3
31 31 H 1.08999 * 109.46993 * 210.00366 * 1 2 3
32 32 H 1.08000 * 120.37747 * 359.95942 * 3 2 1
33 33 H 1.09001 * 109.47160 * 210.00162 * 5 4 3
34 34 H 1.09009 * 109.47176 * 329.99803 * 5 4 3
35 35 H 0.97004 * 120.00295 * 185.00562 * 12 11 9
36 36 H 1.09000 * 109.47472 * 210.00384 * 17 8 6
37 37 H 1.09001 * 109.46978 * 330.00119 * 17 8 6
38 38 H 1.07996 * 120.00447 * 359.97438 * 19 18 17
39 39 H 1.08003 * 119.99728 * 180.23121 * 20 19 18
40 40 H 1.07999 * 119.99659 * 179.73341 * 21 20 19
41 41 H 1.07997 * 120.00053 * 179.97438 * 22 21 20
42 42 H 1.08010 * 120.00234 * 359.97438 * 23 18 17
43 43 H 0.96701 * 114.00310 * 0.22046 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1950 1.1679 0.0000
4 7 3.5563 1.1383 0.0005
5 6 4.3129 2.3928 0.0000
6 6 4.5719 2.8240 1.4205
7 8 4.0878 2.2004 2.3414
8 7 5.3413 3.9025 1.6679
9 6 5.8115 4.6621 0.6279
10 1 6.1822 4.1831 -0.2662
11 6 5.8111 6.0482 0.7243
12 7 5.2328 6.6356 1.7477
13 14 6.6328 7.0768 -0.6010
14 1 5.6445 7.3984 -1.6619
15 1 7.1451 8.3361 -0.0037
16 1 7.7617 6.3137 -1.1912
17 6 5.6752 4.2633 3.0479
18 6 6.9524 3.5732 3.4526
19 6 6.9060 2.3231 4.0408
20 6 8.0779 1.6881 4.4076
21 6 9.2953 2.3077 4.1957
22 6 9.3412 3.5601 3.6123
23 6 8.1697 4.1928 3.2407
24 6 4.2098 -0.0381 0.0016
25 8 5.4295 -0.0472 0.0016
26 7 3.5455 -1.1934 0.0026
27 6 2.2213 -1.2127 0.0071
28 8 1.5592 -2.3909 0.0135
29 1 -0.3633 0.0000 -1.0276
30 1 -0.3632 0.8900 0.5139
31 1 -0.3633 -0.8899 0.5139
32 1 1.6693 2.1113 -0.0007
33 1 5.2629 2.2439 -0.5134
34 1 3.7387 3.1633 -0.5147
35 1 5.1685 7.6030 1.7790
36 1 5.8070 5.3429 3.1196
37 1 4.8679 3.9511 3.7105
38 1 5.9547 1.8411 4.2107
39 1 8.0420 0.7098 4.8637
40 1 10.2106 1.8134 4.4862
41 1 10.2923 4.0443 3.4471
42 1 8.2056 5.1713 2.7848
43 1 2.1366 -3.1666 0.0176
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001142317300.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:28
Heat of formation + Delta-G solvation = -54.962332 kcal
Electronic energy + Delta-G solvation = -30198.113541 eV
Core-core repulsion = 26015.673278 eV
Total energy + Delta-G solvation = -4182.440263 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-42.90983 -40.83554 -39.89870 -39.40093 -37.91656 -36.83768 -35.53503 -33.96763
-33.72456 -32.58145 -31.75130 -29.73302 -27.69405 -27.38781 -26.25760 -25.58714
-23.59026 -23.40638 -22.23742 -21.16899 -20.81922 -19.31058 -19.19812 -18.40639
-17.63686 -17.30386 -17.12378 -16.84353 -16.44862 -16.10378 -15.94274 -15.79254
-15.59621 -15.51740 -15.22963 -14.86484 -14.57267 -14.27747 -14.14987 -13.99084
-13.94758 -13.57614 -13.24598 -13.19394 -12.96428 -12.91401 -12.82227 -12.58810
-12.47898 -12.08420 -11.97571 -11.94379 -11.79815 -11.31621 -11.10016 -10.96364
-10.58194 -9.80401 -9.64791 -9.51679 -9.36723 -8.28136 -6.19355 -0.30792
0.45318 0.51785 0.61740 1.33201 1.42750 1.51884 1.61240 1.87763
2.20974 2.29562 2.59507 2.80068 3.05066 3.15693 3.26166 3.61448
3.82171 3.98596 4.01948 4.10068 4.15895 4.21393 4.25670 4.30809
4.35315 4.43914 4.55266 4.68644 4.82947 4.97635 5.03891 5.09766
5.11451 5.18204 5.28074 5.32492 5.46907 5.50571 5.58871 5.60150
5.83790 5.98289 6.14634 6.16183 6.37537 6.69422 7.02400 7.06127
7.42674 7.88895 8.71421
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.010371 B = 0.004135 C = 0.003312
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2699.153277 B = 6770.342190 C = 8451.617428
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C -0.256 4.256
3 C 0.207 3.793
4 N -0.504 5.504
5 C 0.104 3.896
6 C 0.453 3.547
7 O -0.624 6.624
8 N -0.431 5.431
9 C -0.355 4.355
10 H 0.092 0.908
11 C 0.020 3.980
12 N -0.891 5.891
13 Si 0.981 3.019
14 H -0.264 1.264
15 H -0.282 1.282
16 H -0.267 1.267
17 C 0.146 3.854
18 C -0.101 4.101
19 C -0.127 4.127
20 C -0.133 4.133
21 C -0.124 4.124
22 C -0.125 4.125
23 C -0.110 4.110
24 C 0.647 3.353
25 O -0.594 6.594
26 N -0.647 5.647
27 C 0.461 3.539
28 O -0.432 6.432
29 H 0.086 0.914
30 H 0.084 0.916
31 H 0.075 0.925
32 H 0.216 0.784
33 H 0.106 0.894
34 H 0.154 0.846
35 H 0.276 0.724
36 H 0.118 0.882
37 H 0.038 0.962
38 H 0.095 0.905
39 H 0.135 0.865
40 H 0.154 0.846
41 H 0.149 0.851
42 H 0.115 0.885
43 H 0.429 0.571
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.202 -5.840 -3.688 9.283
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.264 4.264
3 C 0.072 3.928
4 N -0.217 5.217
5 C -0.022 4.022
6 C 0.242 3.758
7 O -0.511 6.511
8 N -0.149 5.149
9 C -0.482 4.482
10 H 0.110 0.890
11 C -0.184 4.184
12 N -0.528 5.528
13 Si 0.805 3.195
14 H -0.189 1.189
15 H -0.207 1.207
16 H -0.192 1.192
17 C 0.023 3.977
18 C -0.102 4.102
19 C -0.146 4.146
20 C -0.151 4.151
21 C -0.142 4.142
22 C -0.143 4.143
23 C -0.129 4.129
24 C 0.349 3.651
25 O -0.473 6.473
26 N -0.405 5.405
27 C 0.262 3.738
28 O -0.228 6.228
29 H 0.105 0.895
30 H 0.103 0.897
31 H 0.094 0.906
32 H 0.233 0.767
33 H 0.124 0.876
34 H 0.172 0.828
35 H 0.087 0.913
36 H 0.135 0.865
37 H 0.057 0.943
38 H 0.113 0.887
39 H 0.152 0.848
40 H 0.172 0.828
41 H 0.167 0.833
42 H 0.133 0.867
43 H 0.289 0.711
Dipole moment (debyes) X Y Z Total
from point charges -5.534 -6.248 -3.135 8.916
hybrid contribution 0.483 0.669 -0.250 0.862
sum -5.051 -5.579 -3.385 8.252
Atomic orbital electron populations
1.20444 0.84891 1.04208 1.03881 1.19745 1.00470 0.87974 1.18203
1.22961 0.81417 1.02163 0.86262 1.45967 1.07806 1.09222 1.58679
1.21630 0.99955 0.84210 0.96378 1.20977 0.80385 0.83473 0.90985
1.90528 1.55238 1.58251 1.47105 1.43463 1.41778 1.23779 1.05833
1.19748 1.42824 0.88685 0.96987 0.89019 1.26129 0.95573 0.97857
0.98857 1.69716 1.41323 1.11393 1.30342 0.85095 0.78885 0.77439
0.78103 1.18911 1.20701 1.19171 1.20490 0.91560 1.02331 0.83352
1.20512 0.96593 0.95288 0.97826 1.21152 0.98468 0.95137 0.99823
1.21361 0.92522 1.00349 1.00837 1.21433 0.98069 0.95369 0.99309
1.21453 0.98286 0.95774 0.98746 1.21151 0.92263 1.00270 0.99219
1.17465 0.87831 0.80587 0.79203 1.90934 1.13193 1.86275 1.56905
1.69479 1.09153 1.26336 1.35561 1.20531 0.86530 0.87859 0.78865
1.84952 1.37118 1.14625 1.86141 0.89505 0.89738 0.90573 0.76747
0.87566 0.82829 0.91330 0.86483 0.94311 0.88718 0.84757 0.82843
0.83290 0.86677 0.71127
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.09 9.84 71.24 0.70 -0.39 16
2 C -0.26 -5.92 5.88 -19.87 -0.12 -6.04 16
3 C 0.21 5.39 10.04 83.40 0.84 6.23 16
4 N -0.50 -18.37 2.09 -661.79 -1.39 -19.76 16
5 C 0.10 4.02 4.57 85.63 0.39 4.41 16
6 C 0.45 21.76 7.69 87.66 0.67 22.43 16
7 O -0.62 -33.00 15.75 -3.07 -0.05 -33.05 16
8 N -0.43 -21.25 2.50 -639.61 -1.60 -22.85 16
9 C -0.36 -16.79 8.64 84.04 0.73 -16.06 16
10 H 0.09 4.19 7.01 -2.91 -0.02 4.17 16
11 C 0.02 0.89 5.25 84.93 0.45 1.34 16
12 N -0.89 -43.16 10.92 21.66 0.24 -42.92 16
13 Si 0.98 36.28 29.56 68.60 2.03 38.31 16
14 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16
15 H -0.28 -10.43 7.11 99.48 0.71 -9.73 16
16 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16
17 C 0.15 7.20 5.15 85.63 0.44 7.64 16
18 C -0.10 -4.61 5.46 -19.87 -0.11 -4.72 16
19 C -0.13 -5.62 9.70 22.27 0.22 -5.40 16
20 C -0.13 -4.85 10.05 22.27 0.22 -4.63 16
21 C -0.12 -3.92 10.05 22.27 0.22 -3.70 16
22 C -0.12 -4.16 10.05 22.27 0.22 -3.94 16
23 C -0.11 -4.49 9.70 22.27 0.22 -4.28 16
24 C 0.65 28.17 8.34 179.58 1.50 29.66 16
25 O -0.59 -31.38 16.72 -5.23 -0.09 -31.46 16
26 N -0.65 -23.93 10.40 -438.82 -4.56 -28.50 16
27 C 0.46 12.48 7.88 85.21 0.67 13.15 16
28 O -0.43 -7.99 12.70 -84.28 -1.07 -9.06 16
29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16
30 H 0.08 0.98 8.09 -2.38 -0.02 0.96 16
31 H 0.08 1.07 7.60 -2.39 -0.02 1.05 16
32 H 0.22 3.79 8.06 -2.91 -0.02 3.77 16
33 H 0.11 4.44 6.81 -2.39 -0.02 4.43 16
34 H 0.15 4.70 8.03 -2.38 -0.02 4.68 16
35 H 0.28 12.61 8.32 -92.71 -0.77 11.84 16
36 H 0.12 6.01 5.20 -2.39 -0.01 6.00 16
37 H 0.04 2.02 7.31 -2.39 -0.02 2.00 16
38 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16
39 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16
40 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16
41 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16
42 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16
43 H 0.43 5.08 8.98 -74.06 -0.66 4.41 16
Total: -1.00 -77.18 373.86 1.17 -76.01
By element:
Atomic # 1 Polarization: 37.16 SS G_CDS: 0.40 Total: 37.57 kcal
Atomic # 6 Polarization: 28.46 SS G_CDS: 7.26 Total: 35.72 kcal
Atomic # 7 Polarization: -106.72 SS G_CDS: -7.31 Total: -114.03 kcal
Atomic # 8 Polarization: -72.37 SS G_CDS: -1.21 Total: -73.58 kcal
Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal
Total: -77.18 1.17 -76.01 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001142317300.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.044 kcal
(2) G-P(sol) polarization free energy of solvation -77.181 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.137 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.006 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.962 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds