Wall clock time and date at job start Sat Apr 11 2020 06:50:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09007 * 109.46721 * 2 1
4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3
5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1
6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1
7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4
10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4
11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4
12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3
13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1
14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2
15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2
16 16 N 1.46499 * 109.46698 * 180.02562 * 15 13 12
17 17 C 1.34779 * 119.99535 * 179.97438 * 16 15 13
18 18 O 1.21635 * 120.00042 * 359.97438 * 17 16 15
19 19 C 1.47142 * 119.99765 * 179.97438 * 17 16 15
20 20 C 1.37938 * 120.55168 * 359.72266 * 19 17 16
21 21 N 1.33957 * 122.19899 * 179.72350 * 20 19 17
22 22 H 0.97003 * 118.59501 * 180.25222 * 21 20 19
23 23 C 1.37795 * 122.80934 * 0.59284 * 21 20 19
24 24 C 1.39273 * 120.52980 * 179.71101 * 23 21 20
25 25 C 1.37739 * 119.97529 * 179.97438 * 24 23 21
26 26 C 1.38783 * 120.72285 * 0.02562 * 25 24 23
27 27 C 1.37719 * 120.29741 * 359.94102 * 26 25 24
28 28 C 1.39500 * 119.60060 * 0.07982 * 27 26 25
29 29 C 1.47147 * 120.54955 * 180.02562 * 19 17 16
30 30 O 1.21860 * 121.41154 * 359.97438 * 29 19 17
31 31 H 1.09002 * 109.47106 * 180.02562 * 1 2 3
32 32 H 1.08998 * 109.47089 * 300.00187 * 1 2 3
33 33 H 1.08995 * 109.47131 * 60.00355 * 1 2 3
34 34 H 0.97001 * 119.99646 * 179.97438 * 7 6 4
35 35 H 0.96997 * 120.00208 * 95.00345 * 12 2 1
36 36 H 1.08998 * 109.46848 * 299.99555 * 15 13 12
37 37 H 1.08995 * 109.47381 * 59.99830 * 15 13 12
38 38 H 0.96996 * 120.00253 * 359.97438 * 16 15 13
39 39 H 1.07995 * 118.90039 * 0.02562 * 20 19 17
40 40 H 1.08002 * 120.01049 * 359.97438 * 24 23 21
41 41 H 1.07993 * 119.63816 * 180.02562 * 25 24 23
42 42 H 1.07999 * 119.85115 * 179.97438 * 26 25 24
43 43 H 1.07994 * 120.19839 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.6533 -1.5885 -1.1313
6 6 1.6993 -0.2394 -2.4827
7 7 0.9427 0.8296 -2.6034
8 14 2.3226 -1.1197 -4.0078
9 1 1.8270 -0.4201 -5.2204
10 1 3.8076 -1.1190 -4.0076
11 1 1.8282 -2.5199 -4.0080
12 7 2.0183 -0.6905 1.1962
13 6 2.1470 -0.0181 2.3571
14 8 1.8581 1.1586 2.4117
15 6 2.6499 -0.7283 3.5876
16 7 2.6984 0.2129 4.7091
17 6 3.1197 -0.2028 5.9200
18 8 3.4591 -1.3596 6.0816
19 6 3.1690 0.7427 7.0463
20 6 2.7922 2.0584 6.8743
21 7 2.8189 2.9456 7.8776
22 1 2.5390 3.8570 7.6990
23 6 3.2336 2.6205 9.1509
24 6 3.2479 3.5828 10.1576
25 6 3.6641 3.2452 11.4264
26 6 4.0725 1.9512 11.7179
27 6 4.0659 0.9833 10.7382
28 6 3.6473 1.3111 9.4485
29 6 3.6275 0.3020 8.3733
30 8 3.9757 -0.8482 8.5752
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5139 0.8899
33 1 -0.3633 0.5138 -0.8900
34 1 0.7088 1.1611 -3.4845
35 1 2.2490 -1.6316 1.1527
36 1 1.9776 -1.5506 3.8326
37 1 3.6492 -1.1202 3.3980
38 1 2.4274 1.1353 4.5802
39 1 2.4599 2.3830 5.8993
40 1 2.9328 4.5934 9.9433
41 1 3.6726 3.9956 12.2030
42 1 4.3965 1.7021 12.7175
43 1 4.3836 -0.0232 10.9668
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000064346471.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:58
Heat of formation + Delta-G solvation = -63.478619 kcal
Electronic energy + Delta-G solvation = -28132.880316 eV
Core-core repulsion = 23950.070759 eV
Total energy + Delta-G solvation = -4182.809557 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.44618 -39.72527 -38.73783 -37.99235 -37.54545 -35.07191 -34.10948 -32.54732
-32.36816 -31.34655 -30.41066 -29.39783 -27.08282 -25.30377 -24.52996 -24.33570
-22.72768 -21.52993 -20.80628 -19.70108 -19.10151 -18.82167 -18.17642 -17.33490
-16.39660 -16.14040 -15.86121 -15.73633 -15.42442 -15.23603 -15.01224 -15.00048
-14.74712 -14.38193 -14.17459 -14.05252 -13.64679 -13.51230 -13.17753 -12.70749
-12.63872 -12.45370 -12.42332 -12.24460 -11.79381 -11.70281 -11.15619 -10.99262
-10.81661 -10.39448 -10.28233 -10.14919 -9.76175 -9.52186 -9.49846 -9.25800
-9.12352 -9.02291 -8.60828 -8.18217 -8.04463 -6.17322 -4.26720 0.29157
0.37767 1.23198 2.28850 2.44201 3.02409 3.14947 3.21864 3.24073
3.28991 3.30969 3.71924 3.79524 4.00618 4.11411 4.28983 4.33839
4.42315 4.52709 4.65609 4.78353 5.02520 5.15175 5.18790 5.31625
5.34851 5.45460 5.48409 5.58353 5.65001 5.86465 6.02947 6.08294
6.40132 6.41859 6.49396 6.75266 6.88362 7.06936 7.32051 7.46180
7.61344 7.63024 7.70592 7.83307 8.08029 8.36657 8.53684 8.68707
8.95305 9.40627 10.88572
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.028991 B = 0.001844 C = 0.001767
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 965.588462 B =15179.851283 C =15840.660618
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.264 3.736
3 H 0.050 0.950
4 C -0.536 4.536
5 H 0.062 0.938
6 C 0.066 3.934
7 N -0.884 5.884
8 Si 0.903 3.097
9 H -0.286 1.286
10 H -0.276 1.276
11 H -0.276 1.276
12 N -0.701 5.701
13 C 0.498 3.502
14 O -0.560 6.560
15 C 0.100 3.900
16 N -0.720 5.720
17 C 0.577 3.423
18 O -0.520 6.520
19 C -0.325 4.325
20 C 0.215 3.785
21 N -0.595 5.595
22 H 0.423 0.577
23 C 0.180 3.820
24 C -0.168 4.168
25 C -0.061 4.061
26 C -0.153 4.153
27 C -0.032 4.032
28 C -0.181 4.181
29 C 0.432 3.568
30 O -0.448 6.448
31 H 0.027 0.973
32 H 0.014 0.986
33 H 0.091 0.909
34 H 0.265 0.735
35 H 0.393 0.607
36 H 0.094 0.906
37 H 0.095 0.905
38 H 0.403 0.597
39 H 0.172 0.828
40 H 0.135 0.865
41 H 0.133 0.867
42 H 0.132 0.868
43 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.195 8.677 26.347 27.922
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.163 3.837
3 H 0.068 0.932
4 C -0.574 4.574
5 H 0.080 0.920
6 C -0.137 4.137
7 N -0.521 5.521
8 Si 0.731 3.269
9 H -0.211 1.211
10 H -0.201 1.201
11 H -0.201 1.201
12 N -0.348 5.348
13 C 0.282 3.718
14 O -0.440 6.440
15 C -0.027 4.027
16 N -0.376 5.376
17 C 0.364 3.636
18 O -0.396 6.396
19 C -0.337 4.337
20 C 0.081 3.919
21 N -0.203 5.203
22 H 0.260 0.740
23 C 0.079 3.921
24 C -0.188 4.188
25 C -0.080 4.080
26 C -0.172 4.172
27 C -0.050 4.050
28 C -0.185 4.185
29 C 0.313 3.687
30 O -0.325 6.325
31 H 0.047 0.953
32 H 0.033 0.967
33 H 0.109 0.891
34 H 0.075 0.925
35 H 0.226 0.774
36 H 0.112 0.888
37 H 0.113 0.887
38 H 0.241 0.759
39 H 0.189 0.811
40 H 0.153 0.847
41 H 0.151 0.849
42 H 0.150 0.850
43 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 3.340 8.116 26.431 27.850
hybrid contribution 0.041 0.147 -1.210 1.219
sum 3.381 8.263 25.221 26.755
Atomic orbital electron populations
1.22084 0.98296 0.99281 1.00932 1.18794 0.91122 0.93984 0.79810
0.93246 1.21180 1.32631 1.13351 0.90251 0.91973 1.24889 0.94746
0.94950 0.99103 1.69887 1.35747 1.22432 1.24062 0.86479 0.79195
0.79616 0.81654 1.21133 1.20137 1.20104 1.46489 1.64204 1.13845
1.10267 1.20334 0.78859 0.87584 0.85013 1.90608 1.52300 1.16094
1.84997 1.21123 1.03434 0.92741 0.85446 1.45586 1.68604 1.14615
1.08811 1.17314 0.77622 0.87357 0.81307 1.90854 1.47562 1.17957
1.83204 1.21869 1.20372 0.93532 0.97943 1.22157 0.88425 0.89310
0.92030 1.40857 1.58687 1.13767 1.06951 0.73963 1.17919 0.95935
0.93867 0.84400 1.20730 1.06637 0.98680 0.92752 1.21126 0.94564
0.96616 0.95711 1.21185 1.02914 0.93135 0.99975 1.21188 0.93079
1.00312 0.90457 1.20316 1.07999 0.93171 0.97043 1.19316 0.76305
0.87447 0.85628 1.90754 1.39001 1.19281 1.83458 0.95335 0.96660
0.89051 0.92484 0.77417 0.88763 0.88694 0.75889 0.81073 0.84727
0.84907 0.84965 0.84070
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.54 9.26 37.16 0.34 -3.19 16
2 C 0.26 6.47 2.56 -69.09 -0.18 6.30 16
3 H 0.05 1.39 7.58 -51.92 -0.39 0.99 16
4 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16
5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16
6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16
7 N -0.88 -24.30 11.32 55.43 0.63 -23.68 16
8 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16
9 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16
10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
12 N -0.70 -13.85 5.07 -54.93 -0.28 -14.13 16
13 C 0.50 9.16 7.86 -10.98 -0.09 9.08 16
14 O -0.56 -11.76 15.33 5.56 0.09 -11.68 16
15 C 0.10 1.50 6.15 -5.19 -0.03 1.46 16
16 N -0.72 -10.10 5.48 -62.65 -0.34 -10.44 16
17 C 0.58 9.03 7.76 -12.65 -0.10 8.93 16
18 O -0.52 -10.36 15.55 -14.88 -0.23 -10.59 16
19 C -0.32 -4.12 6.04 -102.78 -0.62 -4.74 16
20 C 0.21 1.63 10.65 -16.73 -0.18 1.45 16
21 N -0.60 -3.14 5.21 -10.43 -0.05 -3.20 16
22 H 0.42 0.58 8.73 -40.82 -0.36 0.22 16
23 C 0.18 1.31 6.66 -83.95 -0.56 0.75 16
24 C -0.17 -0.81 9.87 -39.38 -0.39 -1.20 16
25 C -0.06 -0.29 10.01 -39.56 -0.40 -0.68 16
26 C -0.15 -0.92 10.03 -39.57 -0.40 -1.32 16
27 C -0.03 -0.28 9.65 -39.30 -0.38 -0.66 16
28 C -0.18 -1.90 5.89 -104.81 -0.62 -2.52 16
29 C 0.43 6.19 7.15 -32.20 -0.23 5.96 16
30 O -0.45 -8.20 15.85 -15.08 -0.24 -8.44 16
31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16
33 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16
34 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16
35 H 0.39 6.75 8.54 -40.82 -0.35 6.40 16
36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16
37 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16
38 H 0.40 4.98 5.44 -40.82 -0.22 4.76 16
39 H 0.17 0.86 6.31 -52.49 -0.33 0.53 16
40 H 0.13 0.25 8.06 -52.49 -0.42 -0.17 16
41 H 0.13 0.27 8.06 -52.49 -0.42 -0.15 16
42 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16
43 H 0.14 1.27 7.79 -52.49 -0.41 0.86 16
LS Contribution 371.48 15.07 5.60 5.60
Total: -1.00 -37.38 371.48 -8.94 -46.32
By element:
Atomic # 1 Polarization: 12.66 SS G_CDS: -4.88 Total: 7.79 kcal
Atomic # 6 Polarization: 11.33 SS G_CDS: -4.21 Total: 7.12 kcal
Atomic # 7 Polarization: -51.39 SS G_CDS: -0.05 Total: -51.44 kcal
Atomic # 8 Polarization: -30.32 SS G_CDS: -0.39 Total: -30.71 kcal
Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -37.38 -8.94 -46.32 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000064346471.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.160 kcal
(2) G-P(sol) polarization free energy of solvation -37.375 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.535 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.318 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.479 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds