Wall clock time and date at job start Sat Apr 11 2020 06:50:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09007 * 109.46721 * 2 1
4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3
5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1
6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1
7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4
10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4
11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4
12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3
13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1
14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2
15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2
16 16 N 1.46499 * 109.46698 * 180.02562 * 15 13 12
17 17 C 1.34779 * 119.99535 * 179.97438 * 16 15 13
18 18 O 1.21635 * 120.00042 * 359.97438 * 17 16 15
19 19 C 1.47142 * 119.99765 * 179.97438 * 17 16 15
20 20 C 1.37938 * 120.55168 * 359.72266 * 19 17 16
21 21 N 1.33957 * 122.19899 * 179.72350 * 20 19 17
22 22 H 0.97003 * 118.59501 * 180.25222 * 21 20 19
23 23 C 1.37795 * 122.80934 * 0.59284 * 21 20 19
24 24 C 1.39273 * 120.52980 * 179.71101 * 23 21 20
25 25 C 1.37739 * 119.97529 * 179.97438 * 24 23 21
26 26 C 1.38783 * 120.72285 * 0.02562 * 25 24 23
27 27 C 1.37719 * 120.29741 * 359.94102 * 26 25 24
28 28 C 1.39500 * 119.60060 * 0.07982 * 27 26 25
29 29 C 1.47147 * 120.54955 * 180.02562 * 19 17 16
30 30 O 1.21860 * 121.41154 * 359.97438 * 29 19 17
31 31 H 1.09002 * 109.47106 * 180.02562 * 1 2 3
32 32 H 1.08998 * 109.47089 * 300.00187 * 1 2 3
33 33 H 1.08995 * 109.47131 * 60.00355 * 1 2 3
34 34 H 0.97001 * 119.99646 * 179.97438 * 7 6 4
35 35 H 0.96997 * 120.00208 * 95.00345 * 12 2 1
36 36 H 1.08998 * 109.46848 * 299.99555 * 15 13 12
37 37 H 1.08995 * 109.47381 * 59.99830 * 15 13 12
38 38 H 0.96996 * 120.00253 * 359.97438 * 16 15 13
39 39 H 1.07995 * 118.90039 * 0.02562 * 20 19 17
40 40 H 1.08002 * 120.01049 * 359.97438 * 24 23 21
41 41 H 1.07993 * 119.63816 * 180.02562 * 25 24 23
42 42 H 1.07999 * 119.85115 * 179.97438 * 26 25 24
43 43 H 1.07994 * 120.19839 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.6533 -1.5885 -1.1313
6 6 1.6993 -0.2394 -2.4827
7 7 0.9427 0.8296 -2.6034
8 14 2.3226 -1.1197 -4.0078
9 1 1.8270 -0.4201 -5.2204
10 1 3.8076 -1.1190 -4.0076
11 1 1.8282 -2.5199 -4.0080
12 7 2.0183 -0.6905 1.1962
13 6 2.1470 -0.0181 2.3571
14 8 1.8581 1.1586 2.4117
15 6 2.6499 -0.7283 3.5876
16 7 2.6984 0.2129 4.7091
17 6 3.1197 -0.2028 5.9200
18 8 3.4591 -1.3596 6.0816
19 6 3.1690 0.7427 7.0463
20 6 2.7922 2.0584 6.8743
21 7 2.8189 2.9456 7.8776
22 1 2.5390 3.8570 7.6990
23 6 3.2336 2.6205 9.1509
24 6 3.2479 3.5828 10.1576
25 6 3.6641 3.2452 11.4264
26 6 4.0725 1.9512 11.7179
27 6 4.0659 0.9833 10.7382
28 6 3.6473 1.3111 9.4485
29 6 3.6275 0.3020 8.3733
30 8 3.9757 -0.8482 8.5752
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5139 0.8899
33 1 -0.3633 0.5138 -0.8900
34 1 0.7088 1.1611 -3.4845
35 1 2.2490 -1.6316 1.1527
36 1 1.9776 -1.5506 3.8326
37 1 3.6492 -1.1202 3.3980
38 1 2.4274 1.1353 4.5802
39 1 2.4599 2.3830 5.8993
40 1 2.9328 4.5934 9.9433
41 1 3.6726 3.9956 12.2030
42 1 4.3965 1.7021 12.7175
43 1 4.3836 -0.0232 10.9668
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000064346471.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:58
Heat of formation + Delta-G solvation = -91.325113 kcal
Electronic energy + Delta-G solvation = -28134.087830 eV
Core-core repulsion = 23950.070759 eV
Total energy + Delta-G solvation = -4184.017072 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.16326 -41.02058 -40.04948 -38.97241 -38.22055 -36.83496 -35.42497 -34.35657
-33.22331 -32.03278 -31.25375 -30.91692 -28.41553 -27.31065 -25.27045 -25.07109
-23.41003 -23.10290 -21.96104 -21.30631 -20.16956 -19.44120 -18.94552 -18.74764
-17.73300 -17.39883 -16.94561 -16.89322 -16.78238 -16.54880 -16.24695 -15.78948
-15.66383 -15.36133 -15.31837 -14.96684 -14.83205 -14.51510 -14.45845 -14.28919
-13.91646 -13.79830 -13.49546 -13.08887 -13.00586 -12.91187 -12.83157 -12.71548
-12.28892 -12.25788 -12.15811 -11.31985 -11.10742 -10.88689 -10.58164 -10.51266
-10.48451 -10.21125 -10.07486 -9.78786 -8.90313 -8.17247 -6.33675 -0.39105
-0.25964 0.63291 1.46565 1.47553 1.54163 1.55175 1.67078 1.72165
1.85202 2.34427 2.39073 2.66483 2.91871 3.07780 3.13492 3.54339
3.63027 3.77934 3.82898 3.98254 4.21767 4.30532 4.31878 4.35973
4.44353 4.56308 4.74861 4.77430 4.87241 4.94789 4.98985 5.10366
5.23045 5.36731 5.43913 5.47081 5.49384 5.58833 5.69291 5.86181
5.89074 6.08545 6.10639 6.52055 6.72687 6.80745 6.85876 7.25664
7.29629 7.44930 8.88471
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.028991 B = 0.001844 C = 0.001767
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 965.588462 B =15179.851283 C =15840.660618
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.271 3.729
3 H 0.008 0.992
4 C -0.549 4.549
5 H 0.071 0.929
6 C 0.017 3.983
7 N -0.914 5.914
8 Si 0.969 3.031
9 H -0.286 1.286
10 H -0.272 1.272
11 H -0.267 1.267
12 N -0.700 5.700
13 C 0.503 3.497
14 O -0.584 6.584
15 C 0.111 3.889
16 N -0.711 5.711
17 C 0.578 3.422
18 O -0.576 6.576
19 C -0.383 4.383
20 C 0.266 3.734
21 N -0.564 5.564
22 H 0.449 0.551
23 C 0.167 3.833
24 C -0.148 4.148
25 C -0.055 4.055
26 C -0.143 4.143
27 C -0.061 4.061
28 C -0.207 4.207
29 C 0.415 3.585
30 O -0.521 6.521
31 H 0.037 0.963
32 H 0.018 0.982
33 H 0.067 0.933
34 H 0.266 0.734
35 H 0.407 0.593
36 H 0.106 0.894
37 H 0.104 0.896
38 H 0.412 0.588
39 H 0.206 0.794
40 H 0.179 0.821
41 H 0.173 0.827
42 H 0.155 0.845
43 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.930 11.678 27.662 30.169
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.168 3.832
3 H 0.026 0.974
4 C -0.587 4.587
5 H 0.090 0.910
6 C -0.183 4.183
7 N -0.552 5.552
8 Si 0.794 3.206
9 H -0.211 1.211
10 H -0.197 1.197
11 H -0.192 1.192
12 N -0.348 5.348
13 C 0.289 3.711
14 O -0.466 6.466
15 C -0.017 4.017
16 N -0.368 5.368
17 C 0.368 3.632
18 O -0.456 6.456
19 C -0.395 4.395
20 C 0.127 3.873
21 N -0.172 5.172
22 H 0.291 0.709
23 C 0.066 3.934
24 C -0.168 4.168
25 C -0.073 4.073
26 C -0.161 4.161
27 C -0.080 4.080
28 C -0.211 4.211
29 C 0.302 3.698
30 O -0.403 6.403
31 H 0.056 0.944
32 H 0.037 0.963
33 H 0.086 0.914
34 H 0.075 0.925
35 H 0.242 0.758
36 H 0.124 0.876
37 H 0.122 0.878
38 H 0.252 0.748
39 H 0.223 0.777
40 H 0.196 0.804
41 H 0.190 0.810
42 H 0.173 0.827
43 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 3.062 11.201 27.791 30.119
hybrid contribution 0.099 -0.520 -1.437 1.531
sum 3.162 10.681 26.354 28.611
Atomic orbital electron populations
1.21907 0.98056 0.99494 0.99897 1.18401 0.91246 0.92168 0.81401
0.97434 1.21524 1.32671 1.13642 0.90907 0.91040 1.25731 0.94896
0.95598 1.02118 1.70023 1.36796 1.23758 1.24658 0.85442 0.78611
0.78681 0.77866 1.21122 1.19732 1.19191 1.46229 1.64561 1.14497
1.09552 1.20760 0.77801 0.87198 0.85313 1.90588 1.53181 1.17346
1.85472 1.20997 1.03934 0.92713 0.84008 1.45476 1.68356 1.14822
1.08142 1.17733 0.76362 0.87160 0.81944 1.90811 1.50351 1.20411
1.84047 1.21494 1.26019 0.95379 0.96598 1.22393 0.83997 0.87524
0.93397 1.40970 1.55790 1.14512 1.05921 0.70864 1.18084 0.96480
0.93160 0.85677 1.21252 1.04146 0.99680 0.91702 1.21657 0.92479
0.96465 0.96711 1.21521 1.01325 0.93215 1.00076 1.21214 0.94958
1.00629 0.91166 1.20253 1.10275 0.93934 0.96606 1.20006 0.75072
0.87436 0.87326 1.90695 1.43055 1.21910 1.84680 0.94353 0.96300
0.91392 0.92518 0.75767 0.87645 0.87834 0.74799 0.77749 0.80384
0.80957 0.82724 0.86100
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.51 9.26 71.98 0.67 -5.84 16
2 C 0.27 13.40 2.56 44.24 0.11 13.51 16
3 H 0.01 0.45 7.58 -2.38 -0.02 0.43 16
4 C -0.55 -28.31 8.73 25.60 0.22 -28.09 16
5 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16
6 C 0.02 0.89 5.30 84.66 0.45 1.34 16
7 N -0.91 -50.83 11.32 21.45 0.24 -50.59 16
8 Si 0.97 41.40 29.54 68.60 2.03 43.43 16
9 H -0.29 -12.10 7.11 99.48 0.71 -11.40 16
10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16
11 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16
12 N -0.70 -27.50 5.07 -446.09 -2.26 -29.76 16
13 C 0.50 18.35 7.86 87.66 0.69 19.04 16
14 O -0.58 -24.37 15.33 -3.04 -0.05 -24.42 16
15 C 0.11 3.30 6.15 85.64 0.53 3.83 16
16 N -0.71 -19.89 5.48 -470.37 -2.58 -22.47 16
17 C 0.58 18.96 7.76 86.58 0.67 19.64 16
18 O -0.58 -24.78 15.55 15.10 0.23 -24.55 16
19 C -0.38 -10.05 6.04 -18.67 -0.11 -10.17 16
20 C 0.27 3.46 10.65 84.30 0.90 4.36 16
21 N -0.56 -3.83 5.21 -186.90 -0.97 -4.81 16
22 H 0.45 -1.31 8.73 -92.71 -0.81 -2.12 16
23 C 0.17 1.96 6.66 39.01 0.26 2.22 16
24 C -0.15 -0.66 9.87 22.40 0.22 -0.44 16
25 C -0.05 -0.25 10.01 22.28 0.22 -0.02 16
26 C -0.14 -1.40 10.03 22.28 0.22 -1.18 16
27 C -0.06 -1.14 9.65 22.45 0.22 -0.92 16
28 C -0.21 -4.45 5.89 -19.99 -0.12 -4.56 16
29 C 0.41 13.03 7.15 27.05 0.19 13.22 16
30 O -0.52 -21.67 15.85 14.38 0.23 -21.44 16
31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16
32 H 0.02 0.84 8.14 -2.39 -0.02 0.83 16
33 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16
34 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16
35 H 0.41 13.69 8.54 -92.71 -0.79 12.90 16
36 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16
37 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16
38 H 0.41 9.70 5.44 -92.71 -0.50 9.19 16
39 H 0.21 1.31 6.31 -2.91 -0.02 1.29 16
40 H 0.18 -0.68 8.06 -2.91 -0.02 -0.71 16
41 H 0.17 -0.46 8.06 -2.91 -0.02 -0.49 16
42 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16
43 H 0.12 2.61 7.79 -2.91 -0.02 2.58 16
Total: -1.00 -89.69 371.48 1.22 -88.47
By element:
Atomic # 1 Polarization: 21.19 SS G_CDS: -1.00 Total: 20.19 kcal
Atomic # 6 Polarization: 20.58 SS G_CDS: 5.35 Total: 25.93 kcal
Atomic # 7 Polarization: -102.05 SS G_CDS: -5.57 Total: -107.62 kcal
Atomic # 8 Polarization: -70.82 SS G_CDS: 0.42 Total: -70.40 kcal
Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal
Total: -89.69 1.22 -88.47 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000064346471.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.852 kcal
(2) G-P(sol) polarization free energy of solvation -89.693 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.545 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.473 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.325 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds