Wall clock time and date at job start Sat Apr 11 2020 06:50:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09000 * 109.47292 * 2 1
4 4 O 1.42901 * 109.46887 * 120.00127 * 2 1 3
5 5 C 1.35910 * 116.99659 * 275.26307 * 4 2 1
6 6 C 1.39847 * 120.09764 * 5.36951 * 5 4 2
7 7 N 1.31023 * 121.66465 * 179.97438 * 6 5 4
8 8 C 1.33689 * 121.39920 * 0.02562 * 7 6 5
9 9 C 1.40606 * 120.99905 * 180.02562 * 8 7 6
10 10 C 1.36069 * 119.76615 * 179.97438 * 9 8 7
11 11 C 1.39365 * 121.06971 * 0.04133 * 10 9 8
12 12 C 1.36127 * 120.86374 * 359.97438 * 11 10 9
13 13 C 1.40463 * 119.62264 * 0.02562 * 12 11 10
14 14 C 1.37007 * 120.09094 * 185.09403 * 5 4 2
15 15 C 1.50701 * 109.46947 * 239.99603 * 2 1 3
16 16 O 1.21279 * 119.99856 * 245.00177 * 15 2 1
17 17 N 1.34775 * 119.99554 * 65.00804 * 15 2 1
18 18 C 1.46499 * 119.99739 * 179.97438 * 17 15 2
19 19 C 1.50698 * 109.47459 * 179.97438 * 18 17 15
20 20 O 1.21296 * 119.99556 * 0.02562 * 19 18 17
21 21 N 1.34777 * 120.00410 * 179.97438 * 19 18 17
22 22 C 1.37094 * 120.00029 * 179.97438 * 21 19 18
23 23 H 1.07998 * 120.00158 * 0.02562 * 22 21 19
24 24 C 1.38952 * 119.99860 * 180.02562 * 22 21 19
25 25 N 1.31410 * 120.00140 * 0.02562 * 24 22 21
26 26 Si 1.86802 * 119.99907 * 180.02562 * 24 22 21
27 27 H 1.48501 * 109.47296 * 0.02562 * 26 24 22
28 28 H 1.48500 * 109.46867 * 120.00081 * 26 24 22
29 29 H 1.48495 * 109.47038 * 240.00074 * 26 24 22
30 30 H 1.08997 * 109.47056 * 300.00620 * 1 2 3
31 31 H 1.09000 * 109.47292 * 179.97438 * 1 2 3
32 32 H 1.09004 * 109.46644 * 59.99750 * 1 2 3
33 33 H 1.08003 * 119.16413 * 359.97438 * 6 5 4
34 34 H 1.08004 * 120.11120 * 359.97087 * 9 8 7
35 35 H 1.08000 * 119.46490 * 180.02562 * 10 9 8
36 36 H 1.07998 * 119.56585 * 180.02562 * 11 10 9
37 37 H 1.08000 * 120.19395 * 179.97438 * 12 11 10
38 38 H 1.07999 * 120.93938 * 0.02562 * 14 5 4
39 39 H 0.96994 * 120.00572 * 359.97438 * 17 15 2
40 40 H 1.08995 * 109.47387 * 300.00115 * 18 17 15
41 41 H 1.09009 * 109.46920 * 59.99767 * 18 17 15
42 42 H 0.96998 * 119.99398 * 0.02562 * 21 19 18
43 43 H 0.96994 * 119.99988 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0063 -0.6737 1.1668
5 6 2.1072 0.0613 2.3056
6 6 1.6479 1.3820 2.3309
7 7 1.7296 2.1179 3.4118
8 6 2.2576 1.6386 4.5426
9 6 2.3405 2.4357 5.6979
10 6 2.8822 1.9221 6.8355
11 6 3.3601 0.6136 6.8775
12 6 3.2973 -0.1883 5.7793
13 6 2.7443 0.3085 4.5875
14 6 2.6540 -0.4914 3.4337
15 6 2.0323 -0.7105 -1.2304
16 8 2.6529 -1.7468 -1.1214
17 7 1.7919 -0.1942 -2.4519
18 6 2.2807 -0.8846 -3.6481
19 6 1.8815 -0.1067 -4.8755
20 8 1.2512 0.9234 -4.7622
21 7 2.2258 -0.5549 -6.0990
22 6 1.8622 0.1525 -7.2156
23 1 1.3002 1.0693 -7.1148
24 6 2.2167 -0.3099 -8.4770
25 7 2.9000 -1.4257 -8.5998
26 14 1.7219 0.6544 -9.9985
27 1 0.9647 1.8656 -9.5923
28 1 2.9397 1.0598 -10.7453
29 1 0.8684 -0.1953 -10.8672
30 1 -0.3633 0.5139 0.8899
31 1 -0.3634 -1.0277 -0.0005
32 1 -0.3633 0.5139 -0.8900
33 1 1.2150 1.8059 1.4368
34 1 1.9755 3.4521 5.6822
35 1 2.9432 2.5386 7.7202
36 1 3.7850 0.2306 7.7935
37 1 3.6712 -1.2006 5.8238
38 1 3.0108 -1.5108 3.4357
39 1 1.2954 0.6344 -2.5392
40 1 3.3670 -0.9625 -3.6042
41 1 1.8463 -1.8833 -3.6941
42 1 2.7302 -1.3785 -6.1895
43 1 3.1472 -1.7487 -9.4803
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000344165372.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:10
Heat of formation + Delta-G solvation = -52.251793 kcal
Electronic energy + Delta-G solvation = -27806.227869 eV
Core-core repulsion = 23623.905143 eV
Total energy + Delta-G solvation = -4182.322725 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 2.04 seconds
Orbital eigenvalues (eV)
-41.48250 -40.20821 -38.97001 -38.07197 -36.78792 -34.59890 -33.90810 -33.70690
-32.10348 -31.41706 -30.62307 -29.71241 -27.81617 -25.18304 -24.88317 -24.33872
-23.22761 -22.43797 -20.45044 -19.74288 -18.93238 -18.41931 -18.21514 -17.92936
-16.79768 -16.34567 -16.04066 -15.67038 -15.31744 -15.24007 -15.02855 -14.74429
-14.50290 -14.33161 -14.18622 -14.00327 -13.75681 -13.71024 -13.48428 -13.28106
-12.65250 -12.42773 -12.26939 -12.14536 -12.04387 -11.96515 -11.73510 -11.68218
-11.56612 -11.18274 -10.44919 -10.41201 -10.37225 -9.95616 -9.74043 -9.70268
-8.97980 -8.92504 -8.71376 -8.34268 -8.16122 -6.56776 -3.99054 0.01904
0.47656 1.65351 2.33646 2.52890 2.57103 3.06618 3.19556 3.25638
3.41864 3.66760 3.74638 3.91126 4.05961 4.11154 4.28399 4.42846
4.44489 4.56489 4.60159 4.69046 4.77283 4.78527 4.82777 5.04602
5.11673 5.17758 5.29476 5.40088 5.43895 5.61058 5.68563 5.78249
5.80578 5.85869 5.91899 5.98014 6.05825 6.09212 6.42101 6.48032
6.85207 7.41308 7.46598 7.58582 7.85935 8.21590 8.38637 8.99018
9.32836 9.80026 10.59967
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.033105 B = 0.001654 C = 0.001617
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 845.587717 B =16919.813693 C =17316.553510
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.065 3.935
3 H 0.101 0.899
4 O -0.276 6.276
5 C 0.081 3.919
6 C 0.066 3.934
7 N -0.437 5.437
8 C 0.091 3.909
9 C -0.079 4.079
10 C -0.116 4.116
11 C -0.107 4.107
12 C -0.105 4.105
13 C -0.061 4.061
14 C -0.106 4.106
15 C 0.517 3.483
16 O -0.524 6.524
17 N -0.700 5.700
18 C 0.110 3.890
19 C 0.427 3.573
20 O -0.598 6.598
21 N -0.547 5.547
22 C -0.306 4.306
23 H 0.107 0.893
24 C 0.026 3.974
25 N -0.893 5.893
26 Si 0.933 3.067
27 H -0.267 1.267
28 H -0.280 1.280
29 H -0.280 1.280
30 H 0.074 0.926
31 H 0.078 0.922
32 H 0.088 0.912
33 H 0.167 0.833
34 H 0.135 0.865
35 H 0.129 0.871
36 H 0.128 0.872
37 H 0.132 0.868
38 H 0.149 0.851
39 H 0.412 0.588
40 H 0.086 0.914
41 H 0.086 0.914
42 H 0.396 0.604
43 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.859 2.929 27.439 27.608
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C 0.005 3.995
3 H 0.119 0.881
4 O -0.187 6.187
5 C 0.033 3.967
6 C -0.108 4.108
7 N -0.145 5.145
8 C -0.030 4.030
9 C -0.098 4.098
10 C -0.136 4.136
11 C -0.125 4.125
12 C -0.123 4.123
13 C -0.063 4.063
14 C -0.132 4.132
15 C 0.301 3.699
16 O -0.400 6.400
17 N -0.356 5.356
18 C -0.017 4.017
19 C 0.212 3.788
20 O -0.485 6.485
21 N -0.181 5.181
22 C -0.435 4.435
23 H 0.125 0.875
24 C -0.177 4.177
25 N -0.533 5.533
26 Si 0.760 3.240
27 H -0.191 1.191
28 H -0.206 1.206
29 H -0.206 1.206
30 H 0.093 0.907
31 H 0.097 0.903
32 H 0.107 0.893
33 H 0.184 0.816
34 H 0.153 0.847
35 H 0.147 0.853
36 H 0.146 0.854
37 H 0.150 0.850
38 H 0.167 0.833
39 H 0.251 0.749
40 H 0.104 0.896
41 H 0.104 0.896
42 H 0.230 0.770
43 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -0.990 3.429 27.426 27.657
hybrid contribution 0.148 -0.445 -1.105 1.201
sum -0.842 2.983 26.321 26.502
Atomic orbital electron populations
1.22390 0.92048 1.04886 1.04307 1.22267 0.96172 0.97108 0.83970
0.88120 1.86260 1.80781 1.36411 1.15258 1.19749 0.97269 0.91832
0.87855 1.23348 0.99288 0.90353 0.97829 1.67936 1.12523 1.35633
0.98445 1.18872 0.99246 0.91795 0.93120 1.20791 0.98440 0.99769
0.90771 1.20885 0.98708 0.95810 0.98162 1.20951 0.98892 0.94035
0.98574 1.20967 0.99390 1.00307 0.91670 1.18593 0.99246 0.94037
0.94451 1.20690 1.01176 1.01330 0.90020 1.19823 0.80546 0.85659
0.83880 1.90742 1.39771 1.23049 1.86391 1.45535 1.57315 1.28484
1.04266 1.20999 1.00389 0.96323 0.84013 1.19678 0.86560 0.88064
0.84483 1.90499 1.45713 1.26344 1.85906 1.41797 1.48042 1.23984
1.04308 1.19789 1.33447 1.07249 0.83064 0.87545 1.25340 0.96412
0.96434 0.99485 1.69617 1.37561 1.20717 1.25391 0.85747 0.78364
0.79461 0.80459 1.19107 1.20587 1.20579 0.90692 0.90289 0.89332
0.81629 0.84706 0.85285 0.85424 0.85014 0.83332 0.74939 0.89584
0.89551 0.77000 0.91569
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.60 9.12 37.16 0.34 -1.26 16
2 C 0.06 0.73 2.64 -27.88 -0.07 0.65 16
3 H 0.10 0.90 6.31 -51.93 -0.33 0.57 16
4 O -0.28 -3.52 9.33 -39.32 -0.37 -3.89 16
5 C 0.08 0.92 6.57 -39.43 -0.26 0.66 16
6 C 0.07 0.70 9.39 -17.29 -0.16 0.53 16
7 N -0.44 -5.09 10.33 -10.85 -0.11 -5.20 16
8 C 0.09 1.00 6.60 -84.84 -0.56 0.44 16
9 C -0.08 -0.69 9.98 -39.47 -0.39 -1.08 16
10 C -0.12 -0.77 9.94 -39.94 -0.40 -1.17 16
11 C -0.11 -0.69 9.96 -39.92 -0.40 -1.09 16
12 C -0.10 -0.81 9.77 -39.50 -0.39 -1.20 16
13 C -0.06 -0.62 5.74 -106.81 -0.61 -1.24 16
14 C -0.11 -1.11 9.82 -39.10 -0.38 -1.50 16
15 C 0.52 7.73 7.18 -10.99 -0.08 7.65 16
16 O -0.52 -9.78 16.51 -14.30 -0.24 -10.01 16
17 N -0.70 -10.67 5.49 -61.47 -0.34 -11.00 16
18 C 0.11 1.91 6.15 -5.19 -0.03 1.88 16
19 C 0.43 9.34 7.85 -10.99 -0.09 9.26 16
20 O -0.60 -14.57 15.24 5.54 0.08 -14.49 16
21 N -0.55 -13.13 5.29 -10.96 -0.06 -13.19 16
22 C -0.31 -8.11 9.68 -14.93 -0.14 -8.26 16
23 H 0.11 2.94 7.16 -52.49 -0.38 2.57 16
24 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16
25 N -0.89 -23.39 13.05 55.50 0.72 -22.66 16
26 Si 0.93 20.13 29.55 -169.99 -5.02 15.10 16
27 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
28 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16
29 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16
30 H 0.07 0.56 6.89 -51.93 -0.36 0.20 16
31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
32 H 0.09 0.71 7.92 -51.93 -0.41 0.30 16
33 H 0.17 1.36 5.37 -52.48 -0.28 1.08 16
34 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16
35 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16
36 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16
37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16
38 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16
39 H 0.41 5.93 7.22 -40.82 -0.29 5.64 16
40 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16
41 H 0.09 1.44 8.14 -51.92 -0.42 1.02 16
42 H 0.40 9.16 7.90 -40.82 -0.32 8.84 16
43 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16
LS Contribution 373.80 15.07 5.63 5.63
Total: -1.00 -33.03 373.80 -8.31 -41.33
By element:
Atomic # 1 Polarization: 18.41 SS G_CDS: -4.89 Total: 13.52 kcal
Atomic # 6 Polarization: 8.59 SS G_CDS: -3.73 Total: 4.86 kcal
Atomic # 7 Polarization: -52.28 SS G_CDS: 0.22 Total: -52.06 kcal
Atomic # 8 Polarization: -27.87 SS G_CDS: -0.52 Total: -28.39 kcal
Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -33.03 -8.31 -41.33 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344165372.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.918 kcal
(2) G-P(sol) polarization free energy of solvation -33.027 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.945 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.252 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.04 seconds